data_3NF8
#
_model_server_result.job_id            HX4Gje30gjcchXqMGolp-w 
_model_server_result.datetime_utc      '2024-11-14 16:15:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nf8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":267}' 
#
_entry.id    3NF8 
#
_exptl.entry_id    3NF8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              359.76 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '6-[(5-chloro-2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NF8 
_cell.length_a            71.549 
_cell.length_b            71.549 
_cell.length_c            67.099 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NF8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 N N N 
? 3 O N N 
#
_chem_comp.formula           'C18 H14 Cl N O5' 
_chem_comp.formula_weight    359.76 
_chem_comp.id                CDQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '6-[(5-chloro-2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL25 C1 CDQ sing 77 n n 
C6 C1 CDQ doub 78 n y 
C1 C2 CDQ sing 79 n y 
C2 C3 CDQ doub 80 n y 
C2 H2 CDQ sing 81 n n 
C4 C3 CDQ sing 82 n y 
C3 H3 CDQ sing 83 n n 
C5 C4 CDQ doub 84 n y 
C4 N10 CDQ sing 85 n n 
C6 C5 CDQ sing 86 n y 
C5 C7 CDQ sing 87 n n 
C6 H6 CDQ sing 88 n n 
C7 C8 CDQ sing 89 n n 
C7 H7 CDQ sing 90 n n 
C7 H7A CDQ sing 91 n n 
C8 O9 CDQ doub 92 n n 
C8 N10 CDQ sing 93 n n 
N10 C11 CDQ sing 94 n n 
C12 C11 CDQ sing 95 n n 
C11 H11 CDQ sing 96 n n 
C11 H11A CDQ sing 97 n n 
C13 C12 CDQ doub 98 n y 
C12 C17 CDQ sing 99 n y 
C14 C13 CDQ sing 100 n y 
C13 H13 CDQ sing 101 n n 
C14 C15 CDQ doub 102 n y 
C14 H14 CDQ sing 103 n n 
O24 C15 CDQ sing 104 n n 
C15 C16 CDQ sing 105 n y 
C16 C17 CDQ doub 106 n y 
C16 O21 CDQ sing 107 n n 
C17 C18 CDQ sing 108 n n 
O20 C18 CDQ doub 109 n n 
C18 O19 CDQ sing 110 n n 
O19 HO19 CDQ sing 111 n n 
C22 O21 CDQ sing 112 n n 
C23 C22 CDQ sing 113 n n 
C22 H22 CDQ sing 114 n n 
C22 H22A CDQ sing 115 n n 
O24 C23 CDQ sing 116 n n 
C23 H23 CDQ sing 117 n n 
C23 H23A CDQ sing 118 n n 
#
_atom_sites.entry_id                     3NF8 
_atom_sites.fract_transf_matrix[1][1]    0.013976 
_atom_sites.fract_transf_matrix[1][2]    0.008069 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016139 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 2 2 SO4 SO4 . 
D 2 SO4 A 1 4 4 SO4 SO4 . 
E 2 SO4 A 1 5 5 SO4 SO4 . 
F 3 CDQ A 1 225 225 CDQ UNL . 
G 3 CDQ A 1 247 247 CDQ UNL . 
H 3 CDQ A 1 267 267 CDQ UNL . 
I 3 CDQ A 1 277 277 CDQ UNL . 
J 4 ACY A 1 1 1 ACY ACY . 
K 2 SO4 B 1 1 1 SO4 SO4 . 
L 2 SO4 B 1 3 3 SO4 SO4 . 
M 2 SO4 B 1 6 6 SO4 SO4 . 
N 3 CDQ B 1 235 235 CDQ UNL . 
O 3 CDQ B 1 257 257 CDQ UNL . 
P 4 ACY B 1 2 2 ACY ACY . 
Q 5 HOH A 1 6 6 HOH HOH . 
Q 5 HOH A 2 7 7 HOH HOH . 
Q 5 HOH A 3 11 11 HOH HOH . 
Q 5 HOH A 4 12 12 HOH HOH . 
Q 5 HOH A 5 14 14 HOH HOH . 
Q 5 HOH A 6 15 15 HOH HOH . 
Q 5 HOH A 7 17 17 HOH HOH . 
Q 5 HOH A 8 18 18 HOH HOH . 
Q 5 HOH A 9 19 19 HOH HOH . 
Q 5 HOH A 10 22 22 HOH HOH . 
Q 5 HOH A 11 26 26 HOH HOH . 
Q 5 HOH A 12 27 27 HOH HOH . 
Q 5 HOH A 13 29 29 HOH HOH . 
Q 5 HOH A 14 213 1 HOH HOH . 
Q 5 HOH A 15 214 4 HOH HOH . 
Q 5 HOH A 16 215 31 HOH HOH . 
Q 5 HOH A 17 216 32 HOH HOH . 
Q 5 HOH A 18 217 34 HOH HOH . 
Q 5 HOH A 19 218 39 HOH HOH . 
Q 5 HOH A 20 219 40 HOH HOH . 
Q 5 HOH A 21 220 41 HOH HOH . 
Q 5 HOH A 22 221 43 HOH HOH . 
Q 5 HOH A 23 222 45 HOH HOH . 
Q 5 HOH A 24 223 47 HOH HOH . 
Q 5 HOH A 25 224 52 HOH HOH . 
Q 5 HOH A 26 226 53 HOH HOH . 
Q 5 HOH A 27 227 54 HOH HOH . 
Q 5 HOH A 28 228 57 HOH HOH . 
Q 5 HOH A 29 229 58 HOH HOH . 
Q 5 HOH A 30 230 59 HOH HOH . 
Q 5 HOH A 31 231 61 HOH HOH . 
Q 5 HOH A 32 232 62 HOH HOH . 
Q 5 HOH A 33 233 68 HOH HOH . 
Q 5 HOH A 34 234 69 HOH HOH . 
Q 5 HOH A 35 235 70 HOH HOH . 
Q 5 HOH A 36 236 71 HOH HOH . 
Q 5 HOH A 37 237 72 HOH HOH . 
Q 5 HOH A 38 238 73 HOH HOH . 
Q 5 HOH A 39 239 78 HOH HOH . 
Q 5 HOH A 40 240 80 HOH HOH . 
Q 5 HOH A 41 241 81 HOH HOH . 
Q 5 HOH A 42 242 82 HOH HOH . 
Q 5 HOH A 43 243 83 HOH HOH . 
Q 5 HOH A 44 244 84 HOH HOH . 
Q 5 HOH A 45 245 85 HOH HOH . 
Q 5 HOH A 46 246 90 HOH HOH . 
Q 5 HOH A 47 248 91 HOH HOH . 
Q 5 HOH A 48 249 93 HOH HOH . 
Q 5 HOH A 49 250 95 HOH HOH . 
Q 5 HOH A 50 251 96 HOH HOH . 
Q 5 HOH A 51 252 97 HOH HOH . 
R 5 HOH B 1 5 5 HOH HOH . 
R 5 HOH B 2 8 8 HOH HOH . 
R 5 HOH B 3 9 9 HOH HOH . 
R 5 HOH B 4 10 10 HOH HOH . 
R 5 HOH B 5 13 13 HOH HOH . 
R 5 HOH B 6 16 16 HOH HOH . 
R 5 HOH B 7 20 20 HOH HOH . 
R 5 HOH B 8 21 21 HOH HOH . 
R 5 HOH B 9 23 23 HOH HOH . 
R 5 HOH B 10 24 24 HOH HOH . 
R 5 HOH B 11 25 25 HOH HOH . 
R 5 HOH B 12 28 28 HOH HOH . 
R 5 HOH B 13 213 2 HOH HOH . 
R 5 HOH B 14 214 3 HOH HOH . 
R 5 HOH B 15 215 30 HOH HOH . 
R 5 HOH B 16 216 33 HOH HOH . 
R 5 HOH B 17 217 35 HOH HOH . 
R 5 HOH B 18 218 36 HOH HOH . 
R 5 HOH B 19 219 37 HOH HOH . 
R 5 HOH B 20 220 38 HOH HOH . 
R 5 HOH B 21 221 42 HOH HOH . 
R 5 HOH B 22 222 44 HOH HOH . 
R 5 HOH B 23 223 46 HOH HOH . 
R 5 HOH B 24 224 48 HOH HOH . 
R 5 HOH B 25 225 49 HOH HOH . 
R 5 HOH B 26 226 50 HOH HOH . 
R 5 HOH B 27 227 51 HOH HOH . 
R 5 HOH B 28 228 55 HOH HOH . 
R 5 HOH B 29 229 56 HOH HOH . 
R 5 HOH B 30 230 60 HOH HOH . 
R 5 HOH B 31 231 63 HOH HOH . 
R 5 HOH B 32 232 64 HOH HOH . 
R 5 HOH B 33 233 65 HOH HOH . 
R 5 HOH B 34 234 66 HOH HOH . 
R 5 HOH B 35 236 67 HOH HOH . 
R 5 HOH B 36 237 74 HOH HOH . 
R 5 HOH B 37 238 75 HOH HOH . 
R 5 HOH B 38 239 76 HOH HOH . 
R 5 HOH B 39 240 77 HOH HOH . 
R 5 HOH B 40 241 79 HOH HOH . 
R 5 HOH B 41 242 86 HOH HOH . 
R 5 HOH B 42 243 87 HOH HOH . 
R 5 HOH B 43 244 88 HOH HOH . 
R 5 HOH B 44 245 89 HOH HOH . 
R 5 HOH B 45 246 92 HOH HOH . 
R 5 HOH B 46 247 94 HOH HOH . 
R 5 HOH B 47 248 98 HOH HOH . 
R 5 HOH B 48 249 99 HOH HOH . 
R 5 HOH B 49 250 100 HOH HOH . 
R 5 HOH B 50 251 101 HOH HOH . 
R 5 HOH B 51 252 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDQ . . . H 3 32.244 -28.257 -0.992 0.7 32.2 ? C1 CDQ 267 A 1 
HETATM 2 C C2 CDQ . . . H 3 31.846 -29.504 -1.456 0.7 32.61 ? C2 CDQ 267 A 1 
HETATM 3 C C3 CDQ . . . H 3 32.678 -30.586 -1.369 0.7 33.15 ? C3 CDQ 267 A 1 
HETATM 4 C C4 CDQ . . . H 3 33.902 -30.364 -0.8 0.7 30.73 ? C4 CDQ 267 A 1 
HETATM 5 C C5 CDQ . . . H 3 34.317 -29.157 -0.346 0.7 31.6 ? C5 CDQ 267 A 1 
HETATM 6 C C6 CDQ . . . H 3 33.487 -28.048 -0.446 0.7 27.85 ? C6 CDQ 267 A 1 
HETATM 7 C C7 CDQ . . . H 3 35.709 -29.302 0.221 0.7 29.3 ? C7 CDQ 267 A 1 
HETATM 8 C C8 CDQ . . . H 3 35.937 -30.767 0.085 0.7 30.19 ? C8 CDQ 267 A 1 
HETATM 9 O O9 CDQ . . . H 3 36.879 -31.385 0.522 0.7 31.08 ? O9 CDQ 267 A 1 
HETATM 10 N N10 CDQ . . . H 3 34.875 -31.312 -0.6 0.7 30.56 ? N10 CDQ 267 A 1 
HETATM 11 C C11 CDQ . . . H 3 34.509 -32.721 -0.707 0.7 31.03 ? C11 CDQ 267 A 1 
HETATM 12 C C12 CDQ . . . H 3 33.609 -33.362 0.327 0.7 27.09 ? C12 CDQ 267 A 1 
HETATM 13 C C13 CDQ . . . H 3 33.448 -32.771 1.576 0.7 30.16 ? C13 CDQ 267 A 1 
HETATM 14 C C14 CDQ . . . H 3 32.662 -33.346 2.568 0.7 21.73 ? C14 CDQ 267 A 1 
HETATM 15 C C15 CDQ . . . H 3 32.055 -34.552 2.244 0.7 28.2 ? C15 CDQ 267 A 1 
HETATM 16 C C16 CDQ . . . H 3 32.197 -35.155 1.009 0.7 26.47 ? C16 CDQ 267 A 1 
HETATM 17 C C17 CDQ . . . H 3 32.979 -34.565 0.038 0.7 29.28 ? C17 CDQ 267 A 1 
HETATM 18 C C18 CDQ . . . H 3 33.128 -35.217 -1.309 0.7 28.36 ? C18 CDQ 267 A 1 
HETATM 19 O O19 CDQ . . . H 3 34.265 -35.345 -1.82 0.7 33.14 ? O19 CDQ 267 A 1 
HETATM 20 O O20 CDQ . . . H 3 32.104 -35.579 -1.924 0.7 22.01 ? O20 CDQ 267 A 1 
HETATM 21 O O21 CDQ . . . H 3 31.601 -36.364 0.67 0.7 31.61 ? O21 CDQ 267 A 1 
HETATM 22 C C22 CDQ . . . H 3 30.731 -36.892 1.684 0.7 31 ? C22 CDQ 267 A 1 
HETATM 23 C C23 CDQ . . . H 3 30.232 -35.897 2.694 0.7 30.73 ? C23 CDQ 267 A 1 
HETATM 24 O O24 CDQ . . . H 3 31.307 -35.115 3.21 0.7 28.22 ? O24 CDQ 267 A 1 
HETATM 25 CL CL25 CDQ . . . H 3 31.1 -26.967 -1.125 0.7 37.41 ? CL25 CDQ 267 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#