data_3NF9
#
_model_server_result.job_id            6kHlISnKI1_hlgO3WpQ_2g 
_model_server_result.datetime_utc      '2024-11-13 07:56:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nf9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":220}' 
#
_entry.id    3NF9 
#
_exptl.entry_id    3NF9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              345.734 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[(6-chloro-2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-1,3-benzodioxole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NF9 
_cell.length_a            71.379 
_cell.length_b            71.379 
_cell.length_c            66.598 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NF9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 S N N 
#
_chem_comp.formula           'C17 H12 Cl N O5' 
_chem_comp.formula_weight    345.734 
_chem_comp.id                CD9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[(6-chloro-2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-1,3-benzodioxole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O23 C22 CD9 sing 77 n n 
O23 C15 CD9 sing 78 n n 
C22 O21 CD9 sing 79 n n 
C15 C14 CD9 doub 80 n y 
C15 C16 CD9 sing 81 n y 
O21 C16 CD9 sing 82 n n 
C14 C13 CD9 sing 83 n y 
C16 C17 CD9 doub 84 n y 
C13 C12 CD9 doub 85 n y 
C17 C12 CD9 sing 86 n y 
C17 C18 CD9 sing 87 n n 
O19 C18 CD9 sing 88 n n 
C12 C11 CD9 sing 89 n n 
C18 O20 CD9 doub 90 n n 
C11 N10 CD9 sing 91 n n 
O9 C8 CD9 doub 92 n n 
N10 C8 CD9 sing 93 n n 
N10 C4 CD9 sing 94 n n 
C8 C7 CD9 sing 95 n n 
C3 C4 CD9 sing 96 n y 
C3 C2 CD9 doub 97 n y 
C4 C5 CD9 doub 98 n y 
CL24 C2 CD9 sing 99 n n 
C2 C1 CD9 sing 100 n y 
C7 C5 CD9 sing 101 n n 
C5 C6 CD9 sing 102 n y 
C1 C6 CD9 doub 103 n y 
C1 H1 CD9 sing 104 n n 
C3 H3 CD9 sing 105 n n 
C6 H6 CD9 sing 106 n n 
C7 H17 CD9 sing 107 n n 
C7 H27 CD9 sing 108 n n 
C11 H111 CD9 sing 109 n n 
C11 H211 CD9 sing 110 n n 
C13 H13 CD9 sing 111 n n 
C14 H14 CD9 sing 112 n n 
C22 H122 CD9 sing 113 n n 
C22 H222 CD9 sing 114 n n 
O19 HO19 CD9 sing 115 n n 
#
_atom_sites.entry_id                     3NF9 
_atom_sites.fract_transf_matrix[1][1]    0.01401 
_atom_sites.fract_transf_matrix[1][2]    0.008089 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016177 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015016 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 2 2 SO4 SO4 . 
D 2 SO4 A 1 4 4 SO4 SO4 . 
E 2 SO4 A 1 5 5 SO4 SO4 . 
F 2 SO4 A 1 8 8 SO4 SO4 . 
G 2 SO4 A 1 10 10 SO4 SO4 . 
H 3 CD9 A 1 220 220 CD9 UNL . 
I 4 EDO A 1 1 1 EDO EDO . 
J 4 EDO A 1 213 2 EDO EDO . 
K 5 ACY A 1 214 2 ACY ACY . 
L 5 ACY A 1 215 4 ACY ACY . 
M 2 SO4 B 1 1 1 SO4 SO4 . 
N 2 SO4 B 1 3 3 SO4 SO4 . 
O 2 SO4 B 1 6 6 SO4 SO4 . 
P 2 SO4 B 1 7 7 SO4 SO4 . 
Q 2 SO4 B 1 9 9 SO4 SO4 . 
R 2 SO4 B 1 11 11 SO4 SO4 . 
S 3 CD9 B 1 213 210 CD9 UNL . 
T 5 ACY B 1 214 1 ACY ACY . 
U 5 ACY B 1 215 3 ACY ACY . 
V 5 ACY B 1 5 5 ACY ACY . 
W 5 ACY B 1 216 6 ACY ACY . 
X 6 HOH A 1 6 6 HOH HOH . 
X 6 HOH A 2 7 7 HOH HOH . 
X 6 HOH A 3 11 11 HOH HOH . 
X 6 HOH A 4 12 12 HOH HOH . 
X 6 HOH A 5 16 16 HOH HOH . 
X 6 HOH A 6 18 18 HOH HOH . 
X 6 HOH A 7 19 19 HOH HOH . 
X 6 HOH A 8 20 20 HOH HOH . 
X 6 HOH A 9 21 21 HOH HOH . 
X 6 HOH A 10 26 26 HOH HOH . 
X 6 HOH A 11 29 29 HOH HOH . 
X 6 HOH A 12 216 1 HOH HOH . 
X 6 HOH A 13 217 2 HOH HOH . 
X 6 HOH A 14 218 10 HOH HOH . 
X 6 HOH A 15 219 32 HOH HOH . 
X 6 HOH A 16 221 33 HOH HOH . 
X 6 HOH A 17 222 35 HOH HOH . 
X 6 HOH A 18 223 36 HOH HOH . 
X 6 HOH A 19 224 39 HOH HOH . 
X 6 HOH A 20 225 42 HOH HOH . 
X 6 HOH A 21 226 46 HOH HOH . 
X 6 HOH A 22 227 47 HOH HOH . 
X 6 HOH A 23 228 49 HOH HOH . 
X 6 HOH A 24 229 53 HOH HOH . 
X 6 HOH A 25 230 55 HOH HOH . 
X 6 HOH A 26 231 56 HOH HOH . 
X 6 HOH A 27 232 57 HOH HOH . 
X 6 HOH A 28 233 58 HOH HOH . 
X 6 HOH A 29 234 59 HOH HOH . 
X 6 HOH A 30 235 61 HOH HOH . 
X 6 HOH A 31 236 63 HOH HOH . 
X 6 HOH A 32 237 65 HOH HOH . 
X 6 HOH A 33 238 66 HOH HOH . 
X 6 HOH A 34 239 67 HOH HOH . 
X 6 HOH A 35 240 70 HOH HOH . 
X 6 HOH A 36 241 72 HOH HOH . 
X 6 HOH A 37 242 74 HOH HOH . 
X 6 HOH A 38 243 75 HOH HOH . 
X 6 HOH A 39 244 76 HOH HOH . 
X 6 HOH A 40 245 77 HOH HOH . 
X 6 HOH A 41 246 78 HOH HOH . 
X 6 HOH A 42 247 79 HOH HOH . 
X 6 HOH A 43 248 80 HOH HOH . 
X 6 HOH A 44 249 85 HOH HOH . 
X 6 HOH A 45 250 86 HOH HOH . 
X 6 HOH A 46 251 89 HOH HOH . 
Y 6 HOH B 1 4 4 HOH HOH . 
Y 6 HOH B 2 8 8 HOH HOH . 
Y 6 HOH B 3 13 13 HOH HOH . 
Y 6 HOH B 4 14 14 HOH HOH . 
Y 6 HOH B 5 15 15 HOH HOH . 
Y 6 HOH B 6 17 17 HOH HOH . 
Y 6 HOH B 7 22 22 HOH HOH . 
Y 6 HOH B 8 23 23 HOH HOH . 
Y 6 HOH B 9 24 24 HOH HOH . 
Y 6 HOH B 10 25 25 HOH HOH . 
Y 6 HOH B 11 27 27 HOH HOH . 
Y 6 HOH B 12 28 28 HOH HOH . 
Y 6 HOH B 13 217 3 HOH HOH . 
Y 6 HOH B 14 218 5 HOH HOH . 
Y 6 HOH B 15 219 9 HOH HOH . 
Y 6 HOH B 16 220 30 HOH HOH . 
Y 6 HOH B 17 221 31 HOH HOH . 
Y 6 HOH B 18 222 34 HOH HOH . 
Y 6 HOH B 19 223 37 HOH HOH . 
Y 6 HOH B 20 224 38 HOH HOH . 
Y 6 HOH B 21 225 40 HOH HOH . 
Y 6 HOH B 22 226 41 HOH HOH . 
Y 6 HOH B 23 227 43 HOH HOH . 
Y 6 HOH B 24 228 44 HOH HOH . 
Y 6 HOH B 25 229 45 HOH HOH . 
Y 6 HOH B 26 230 48 HOH HOH . 
Y 6 HOH B 27 231 50 HOH HOH . 
Y 6 HOH B 28 232 51 HOH HOH . 
Y 6 HOH B 29 233 52 HOH HOH . 
Y 6 HOH B 30 234 54 HOH HOH . 
Y 6 HOH B 31 235 60 HOH HOH . 
Y 6 HOH B 32 236 62 HOH HOH . 
Y 6 HOH B 33 237 64 HOH HOH . 
Y 6 HOH B 34 238 68 HOH HOH . 
Y 6 HOH B 35 239 69 HOH HOH . 
Y 6 HOH B 36 240 71 HOH HOH . 
Y 6 HOH B 37 241 73 HOH HOH . 
Y 6 HOH B 38 242 81 HOH HOH . 
Y 6 HOH B 39 243 82 HOH HOH . 
Y 6 HOH B 40 244 83 HOH HOH . 
Y 6 HOH B 41 245 84 HOH HOH . 
Y 6 HOH B 42 246 87 HOH HOH . 
Y 6 HOH B 43 247 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CD9 . . . H 3 5.139 -28.494 -8.698 0.8 53.19 ? C1 CD9 220 A 1 
HETATM 2 C C2 CD9 . . . H 3 6.294 -29.141 -9.108 0.8 52.31 ? C2 CD9 220 A 1 
HETATM 3 C C3 CD9 . . . H 3 7.401 -28.415 -9.472 0.8 43.14 ? C3 CD9 220 A 1 
HETATM 4 C C4 CD9 . . . H 3 7.307 -27.048 -9.403 0.8 54.13 ? C4 CD9 220 A 1 
HETATM 5 C C5 CD9 . . . H 3 6.179 -26.391 -8.99 0.8 45.65 ? C5 CD9 220 A 1 
HETATM 6 C C6 CD9 . . . H 3 5.065 -27.114 -8.632 0.8 54.14 ? C6 CD9 220 A 1 
HETATM 7 C C7 CD9 . . . H 3 6.394 -24.921 -9.052 0.8 51.33 ? C7 CD9 220 A 1 
HETATM 8 C C8 CD9 . . . H 3 7.818 -24.846 -9.574 0.8 43.22 ? C8 CD9 220 A 1 
HETATM 9 O O9 CD9 . . . H 3 8.421 -23.811 -9.815 0.8 48.01 ? O9 CD9 220 A 1 
HETATM 10 N N10 CD9 . . . H 3 8.298 -26.134 -9.736 0.8 42.42 ? N10 CD9 220 A 1 
HETATM 11 C C11 CD9 . . . H 3 9.641 -26.554 -10.031 0.8 44.37 ? C11 CD9 220 A 1 
HETATM 12 C C12 CD9 . . . H 3 9.964 -26.667 -11.491 0.8 51.48 ? C12 CD9 220 A 1 
HETATM 13 C C13 CD9 . . . H 3 8.983 -26.903 -12.446 0.8 58.14 ? C13 CD9 220 A 1 
HETATM 14 C C14 CD9 . . . H 3 9.277 -27.028 -13.804 0.8 57.37 ? C14 CD9 220 A 1 
HETATM 15 C C15 CD9 . . . H 3 10.593 -26.9 -14.213 0.8 61.6 ? C15 CD9 220 A 1 
HETATM 16 C C16 CD9 . . . H 3 11.564 -26.662 -13.295 0.8 53.33 ? C16 CD9 220 A 1 
HETATM 17 C C17 CD9 . . . H 3 11.273 -26.549 -11.946 0.8 58.34 ? C17 CD9 220 A 1 
HETATM 18 C C18 CD9 . . . H 3 12.406 -26.326 -11.054 0.8 61.35 ? C18 CD9 220 A 1 
HETATM 19 O O19 CD9 . . . H 3 13.376 -25.711 -11.582 0.8 61.84 ? O19 CD9 220 A 1 
HETATM 20 O O20 CD9 . . . H 3 12.284 -26.852 -9.897 0.8 66.67 ? O20 CD9 220 A 1 
HETATM 21 O O21 CD9 . . . H 3 12.813 -26.552 -13.862 0.8 56.89 ? O21 CD9 220 A 1 
HETATM 22 C C22 CD9 . . . H 3 12.488 -26.596 -15.27 0.8 67.16 ? C22 CD9 220 A 1 
HETATM 23 O O23 CD9 . . . H 3 11.121 -26.971 -15.506 0.8 69.66 ? O23 CD9 220 A 1 
HETATM 24 CL CL24 CD9 . . . H 3 6.457 -30.875 -9.199 0.8 68.88 ? CL24 CD9 220 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           24 
#