data_3NFA # _model_server_result.job_id K2tCzNfC1RmpacJ-U4LF0g _model_server_result.datetime_utc '2024-11-22 21:31:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":222}' # _entry.id 3NFA # _exptl.entry_id 3NFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.195 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-[(5-bromo-2,3-dioxo-2,3-dihydro-1H-indol-1-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NFA _cell.length_a 71.474 _cell.length_b 71.474 _cell.length_c 66.833 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 Q N N ? 3 R N N # _chem_comp.formula 'C18 H12 Br N O6' _chem_comp.formula_weight 418.195 _chem_comp.id CBJ _chem_comp.mon_nstd_flag . _chem_comp.name '6-[(5-bromo-2,3-dioxo-2,3-dihydro-1H-indol-1-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 CBJ doub 77 n n C2 C3 CBJ sing 78 n n C2 N12 CBJ sing 79 n n C3 O4 CBJ doub 80 n n C3 C5 CBJ sing 81 n n C5 C6 CBJ doub 82 n y C5 C11 CBJ sing 83 n y C6 C7 CBJ sing 84 n y C7 BR8 CBJ sing 85 n n C7 C9 CBJ doub 86 n y C9 C10 CBJ sing 87 n y C10 C11 CBJ doub 88 n y C11 N12 CBJ sing 89 n n N12 C13 CBJ sing 90 n n C13 C14 CBJ sing 91 n n C14 C15 CBJ doub 92 n y C14 C23 CBJ sing 93 n y C15 C16 CBJ sing 94 n y C16 C17 CBJ doub 95 n y C17 O18 CBJ sing 96 n n C17 C22 CBJ sing 97 n y O18 C19 CBJ sing 98 n n C19 C20 CBJ sing 99 n n C20 O21 CBJ sing 100 n n O21 C22 CBJ sing 101 n n C22 C23 CBJ doub 102 n y C23 C24 CBJ sing 103 n n C24 O25 CBJ doub 104 n n C24 O26 CBJ sing 105 n n C6 H6 CBJ sing 106 n n C9 H9 CBJ sing 107 n n C10 H10 CBJ sing 108 n n C13 H13 CBJ sing 109 n n C13 H13A CBJ sing 110 n n C15 H15 CBJ sing 111 n n C16 H16 CBJ sing 112 n n C19 H19 CBJ sing 113 n n C19 H19A CBJ sing 114 n n C20 H20 CBJ sing 115 n n C20 H20A CBJ sing 116 n n O26 HO26 CBJ sing 117 n n # _atom_sites.entry_id 3NFA _atom_sites.fract_transf_matrix[1][1] 0.013991 _atom_sites.fract_transf_matrix[1][2] 0.008078 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 2 2 SO4 SO4 . D 2 SO4 A 1 4 4 SO4 SO4 . E 2 SO4 A 1 5 5 SO4 SO4 . F 2 SO4 A 1 7 7 SO4 SO4 . G 3 CBJ A 1 213 210 CBJ CBJ . H 3 CBJ A 1 235 235 CBJ CBJ . I 4 ACY A 1 1 1 ACY ACY . J 4 ACY A 1 3 3 ACY ACY . K 4 ACY A 1 214 4 ACY ACY . L 4 ACY A 1 215 5 ACY ACY . M 2 SO4 B 1 1 1 SO4 SO4 . N 2 SO4 B 1 3 3 SO4 SO4 . O 2 SO4 B 1 6 6 SO4 SO4 . P 2 SO4 B 1 8 8 SO4 SO4 . Q 3 CBJ B 1 222 222 CBJ CBJ . R 3 CBJ B 1 245 245 CBJ CBJ . S 4 ACY B 1 2 2 ACY ACY . T 5 HOH A 1 8 8 HOH HOH . T 5 HOH A 2 10 10 HOH HOH . T 5 HOH A 3 11 11 HOH HOH . T 5 HOH A 4 14 14 HOH HOH . T 5 HOH A 5 15 15 HOH HOH . T 5 HOH A 6 16 16 HOH HOH . T 5 HOH A 7 18 18 HOH HOH . T 5 HOH A 8 19 19 HOH HOH . T 5 HOH A 9 21 21 HOH HOH . T 5 HOH A 10 22 22 HOH HOH . T 5 HOH A 11 23 23 HOH HOH . T 5 HOH A 12 26 26 HOH HOH . T 5 HOH A 13 29 29 HOH HOH . T 5 HOH A 14 216 2 HOH HOH . T 5 HOH A 15 217 3 HOH HOH . T 5 HOH A 16 218 4 HOH HOH . T 5 HOH A 17 219 33 HOH HOH . T 5 HOH A 18 220 34 HOH HOH . T 5 HOH A 19 221 36 HOH HOH . T 5 HOH A 20 222 39 HOH HOH . T 5 HOH A 21 223 40 HOH HOH . T 5 HOH A 22 224 42 HOH HOH . T 5 HOH A 23 225 43 HOH HOH . T 5 HOH A 24 226 45 HOH HOH . T 5 HOH A 25 227 46 HOH HOH . T 5 HOH A 26 228 47 HOH HOH . T 5 HOH A 27 229 49 HOH HOH . T 5 HOH A 28 230 53 HOH HOH . T 5 HOH A 29 231 54 HOH HOH . T 5 HOH A 30 232 56 HOH HOH . T 5 HOH A 31 233 57 HOH HOH . T 5 HOH A 32 234 62 HOH HOH . T 5 HOH A 33 236 63 HOH HOH . T 5 HOH A 34 237 67 HOH HOH . T 5 HOH A 35 238 68 HOH HOH . T 5 HOH A 36 239 75 HOH HOH . T 5 HOH A 37 240 76 HOH HOH . T 5 HOH A 38 241 77 HOH HOH . T 5 HOH A 39 242 79 HOH HOH . T 5 HOH A 40 243 80 HOH HOH . T 5 HOH A 41 244 82 HOH HOH . T 5 HOH A 42 246 84 HOH HOH . T 5 HOH A 43 247 88 HOH HOH . T 5 HOH A 44 248 90 HOH HOH . T 5 HOH A 45 249 91 HOH HOH . T 5 HOH A 46 250 92 HOH HOH . T 5 HOH A 47 251 94 HOH HOH . T 5 HOH A 48 252 96 HOH HOH . T 5 HOH A 49 253 98 HOH HOH . T 5 HOH A 50 254 106 HOH HOH . T 5 HOH A 51 255 107 HOH HOH . U 5 HOH B 1 5 5 HOH HOH . U 5 HOH B 2 7 7 HOH HOH . U 5 HOH B 3 9 9 HOH HOH . U 5 HOH B 4 12 12 HOH HOH . U 5 HOH B 5 13 13 HOH HOH . U 5 HOH B 6 17 17 HOH HOH . U 5 HOH B 7 20 20 HOH HOH . U 5 HOH B 8 24 24 HOH HOH . U 5 HOH B 9 25 25 HOH HOH . U 5 HOH B 10 27 27 HOH HOH . U 5 HOH B 11 28 28 HOH HOH . U 5 HOH B 12 213 1 HOH HOH . U 5 HOH B 13 214 6 HOH HOH . U 5 HOH B 14 215 30 HOH HOH . U 5 HOH B 15 216 31 HOH HOH . U 5 HOH B 16 217 32 HOH HOH . U 5 HOH B 17 218 35 HOH HOH . U 5 HOH B 18 219 37 HOH HOH . U 5 HOH B 19 220 38 HOH HOH . U 5 HOH B 20 221 41 HOH HOH . U 5 HOH B 21 223 44 HOH HOH . U 5 HOH B 22 224 48 HOH HOH . U 5 HOH B 23 225 50 HOH HOH . U 5 HOH B 24 226 51 HOH HOH . U 5 HOH B 25 227 52 HOH HOH . U 5 HOH B 26 228 55 HOH HOH . U 5 HOH B 27 229 58 HOH HOH . U 5 HOH B 28 230 59 HOH HOH . U 5 HOH B 29 231 60 HOH HOH . U 5 HOH B 30 232 61 HOH HOH . U 5 HOH B 31 233 64 HOH HOH . U 5 HOH B 32 234 65 HOH HOH . U 5 HOH B 33 235 66 HOH HOH . U 5 HOH B 34 236 69 HOH HOH . U 5 HOH B 35 237 70 HOH HOH . U 5 HOH B 36 238 71 HOH HOH . U 5 HOH B 37 239 72 HOH HOH . U 5 HOH B 38 240 73 HOH HOH . U 5 HOH B 39 241 74 HOH HOH . U 5 HOH B 40 242 78 HOH HOH . U 5 HOH B 41 243 81 HOH HOH . U 5 HOH B 42 244 85 HOH HOH . U 5 HOH B 43 246 86 HOH HOH . U 5 HOH B 44 247 87 HOH HOH . U 5 HOH B 45 248 89 HOH HOH . U 5 HOH B 46 249 93 HOH HOH . U 5 HOH B 47 250 95 HOH HOH . U 5 HOH B 48 251 97 HOH HOH . U 5 HOH B 49 252 99 HOH HOH . U 5 HOH B 50 253 100 HOH HOH . U 5 HOH B 51 254 101 HOH HOH . U 5 HOH B 52 255 102 HOH HOH . U 5 HOH B 53 256 103 HOH HOH . U 5 HOH B 54 257 104 HOH HOH . U 5 HOH B 55 258 105 HOH HOH . U 5 HOH B 56 259 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 CBJ . . . Q 3 18.3 -21.853 24.61 0.7 65.84 ? O1 CBJ 222 B 1 HETATM 2 C C2 CBJ . . . Q 3 17.736 -22.558 23.779 0.7 63.58 ? C2 CBJ 222 B 1 HETATM 3 C C3 CBJ . . . Q 3 16.943 -23.761 24.182 0.7 57.34 ? C3 CBJ 222 B 1 HETATM 4 O O4 CBJ . . . Q 3 16.419 -24.015 25.257 0.7 50.03 ? O4 CBJ 222 B 1 HETATM 5 C C5 CBJ . . . Q 3 16.962 -24.604 23.013 0.7 46.82 ? C5 CBJ 222 B 1 HETATM 6 C C6 CBJ . . . Q 3 16.603 -25.925 22.99 0.7 45.69 ? C6 CBJ 222 B 1 HETATM 7 C C7 CBJ . . . Q 3 16.728 -26.535 21.766 0.7 48.36 ? C7 CBJ 222 B 1 HETATM 8 BR BR8 CBJ . . . Q 3 16.231 -28.373 21.724 0.7 48.27 ? BR8 CBJ 222 B 1 HETATM 9 C C9 CBJ . . . Q 3 17.187 -25.834 20.657 0.7 46.87 ? C9 CBJ 222 B 1 HETATM 10 C C10 CBJ . . . Q 3 17.547 -24.491 20.724 0.7 51.36 ? C10 CBJ 222 B 1 HETATM 11 C C11 CBJ . . . Q 3 17.426 -23.876 21.953 0.7 51.63 ? C11 CBJ 222 B 1 HETATM 12 N N12 CBJ . . . Q 3 17.719 -22.554 22.369 0.7 59.08 ? N12 CBJ 222 B 1 HETATM 13 C C13 CBJ . . . Q 3 18.706 -21.767 21.666 0.7 51.17 ? C13 CBJ 222 B 1 HETATM 14 C C14 CBJ . . . Q 3 18.234 -20.38 21.416 0.7 53.63 ? C14 CBJ 222 B 1 HETATM 15 C C15 CBJ . . . Q 3 19.171 -19.449 21.006 0.7 52.18 ? C15 CBJ 222 B 1 HETATM 16 C C16 CBJ . . . Q 3 18.776 -18.145 20.773 0.7 54.43 ? C16 CBJ 222 B 1 HETATM 17 C C17 CBJ . . . Q 3 17.444 -17.782 20.936 0.7 59.06 ? C17 CBJ 222 B 1 HETATM 18 O O18 CBJ . . . Q 3 17.034 -16.475 20.697 0.7 54.18 ? O18 CBJ 222 B 1 HETATM 19 C C19 CBJ . . . Q 3 15.73 -16.56 20.145 0.7 48.32 ? C19 CBJ 222 B 1 HETATM 20 C C20 CBJ . . . Q 3 14.785 -17.062 21.2 0.7 45.08 ? C20 CBJ 222 B 1 HETATM 21 O O21 CBJ . . . Q 3 15.125 -18.404 21.512 0.7 51.41 ? O21 CBJ 222 B 1 HETATM 22 C C22 CBJ . . . Q 3 16.498 -18.703 21.336 0.7 54.08 ? C22 CBJ 222 B 1 HETATM 23 C C23 CBJ . . . Q 3 16.902 -20 21.575 0.7 56.98 ? C23 CBJ 222 B 1 HETATM 24 C C24 CBJ . . . Q 3 15.823 -20.91 22.014 0.7 65.33 ? C24 CBJ 222 B 1 HETATM 25 O O25 CBJ . . . Q 3 15.235 -20.544 23.074 0.7 82.96 ? O25 CBJ 222 B 1 HETATM 26 O O26 CBJ . . . Q 3 15.567 -21.948 21.347 0.7 48.98 ? O26 CBJ 222 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #