data_3NFA
#
_model_server_result.job_id            SYWlQRBwendIiGY6qskoZA 
_model_server_result.datetime_utc      '2024-11-08 07:23:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":245}' 
#
_entry.id    3NFA 
#
_exptl.entry_id    3NFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              418.195 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '6-[(5-bromo-2,3-dioxo-2,3-dihydro-1H-indol-1-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NFA 
_cell.length_a            71.474 
_cell.length_b            71.474 
_cell.length_c            66.833 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 Q N N 
? 3 R N N 
#
_chem_comp.formula           'C18 H12 Br N O6' 
_chem_comp.formula_weight    418.195 
_chem_comp.id                CBJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '6-[(5-bromo-2,3-dioxo-2,3-dihydro-1H-indol-1-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 CBJ doub 77 n n 
C2 C3 CBJ sing 78 n n 
C2 N12 CBJ sing 79 n n 
C3 O4 CBJ doub 80 n n 
C3 C5 CBJ sing 81 n n 
C5 C6 CBJ doub 82 n y 
C5 C11 CBJ sing 83 n y 
C6 C7 CBJ sing 84 n y 
C7 BR8 CBJ sing 85 n n 
C7 C9 CBJ doub 86 n y 
C9 C10 CBJ sing 87 n y 
C10 C11 CBJ doub 88 n y 
C11 N12 CBJ sing 89 n n 
N12 C13 CBJ sing 90 n n 
C13 C14 CBJ sing 91 n n 
C14 C15 CBJ doub 92 n y 
C14 C23 CBJ sing 93 n y 
C15 C16 CBJ sing 94 n y 
C16 C17 CBJ doub 95 n y 
C17 O18 CBJ sing 96 n n 
C17 C22 CBJ sing 97 n y 
O18 C19 CBJ sing 98 n n 
C19 C20 CBJ sing 99 n n 
C20 O21 CBJ sing 100 n n 
O21 C22 CBJ sing 101 n n 
C22 C23 CBJ doub 102 n y 
C23 C24 CBJ sing 103 n n 
C24 O25 CBJ doub 104 n n 
C24 O26 CBJ sing 105 n n 
C6 H6 CBJ sing 106 n n 
C9 H9 CBJ sing 107 n n 
C10 H10 CBJ sing 108 n n 
C13 H13 CBJ sing 109 n n 
C13 H13A CBJ sing 110 n n 
C15 H15 CBJ sing 111 n n 
C16 H16 CBJ sing 112 n n 
C19 H19 CBJ sing 113 n n 
C19 H19A CBJ sing 114 n n 
C20 H20 CBJ sing 115 n n 
C20 H20A CBJ sing 116 n n 
O26 HO26 CBJ sing 117 n n 
#
_atom_sites.entry_id                     3NFA 
_atom_sites.fract_transf_matrix[1][1]    0.013991 
_atom_sites.fract_transf_matrix[1][2]    0.008078 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016156 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014963 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 2 2 SO4 SO4 . 
D 2 SO4 A 1 4 4 SO4 SO4 . 
E 2 SO4 A 1 5 5 SO4 SO4 . 
F 2 SO4 A 1 7 7 SO4 SO4 . 
G 3 CBJ A 1 213 210 CBJ CBJ . 
H 3 CBJ A 1 235 235 CBJ CBJ . 
I 4 ACY A 1 1 1 ACY ACY . 
J 4 ACY A 1 3 3 ACY ACY . 
K 4 ACY A 1 214 4 ACY ACY . 
L 4 ACY A 1 215 5 ACY ACY . 
M 2 SO4 B 1 1 1 SO4 SO4 . 
N 2 SO4 B 1 3 3 SO4 SO4 . 
O 2 SO4 B 1 6 6 SO4 SO4 . 
P 2 SO4 B 1 8 8 SO4 SO4 . 
Q 3 CBJ B 1 222 222 CBJ CBJ . 
R 3 CBJ B 1 245 245 CBJ CBJ . 
S 4 ACY B 1 2 2 ACY ACY . 
T 5 HOH A 1 8 8 HOH HOH . 
T 5 HOH A 2 10 10 HOH HOH . 
T 5 HOH A 3 11 11 HOH HOH . 
T 5 HOH A 4 14 14 HOH HOH . 
T 5 HOH A 5 15 15 HOH HOH . 
T 5 HOH A 6 16 16 HOH HOH . 
T 5 HOH A 7 18 18 HOH HOH . 
T 5 HOH A 8 19 19 HOH HOH . 
T 5 HOH A 9 21 21 HOH HOH . 
T 5 HOH A 10 22 22 HOH HOH . 
T 5 HOH A 11 23 23 HOH HOH . 
T 5 HOH A 12 26 26 HOH HOH . 
T 5 HOH A 13 29 29 HOH HOH . 
T 5 HOH A 14 216 2 HOH HOH . 
T 5 HOH A 15 217 3 HOH HOH . 
T 5 HOH A 16 218 4 HOH HOH . 
T 5 HOH A 17 219 33 HOH HOH . 
T 5 HOH A 18 220 34 HOH HOH . 
T 5 HOH A 19 221 36 HOH HOH . 
T 5 HOH A 20 222 39 HOH HOH . 
T 5 HOH A 21 223 40 HOH HOH . 
T 5 HOH A 22 224 42 HOH HOH . 
T 5 HOH A 23 225 43 HOH HOH . 
T 5 HOH A 24 226 45 HOH HOH . 
T 5 HOH A 25 227 46 HOH HOH . 
T 5 HOH A 26 228 47 HOH HOH . 
T 5 HOH A 27 229 49 HOH HOH . 
T 5 HOH A 28 230 53 HOH HOH . 
T 5 HOH A 29 231 54 HOH HOH . 
T 5 HOH A 30 232 56 HOH HOH . 
T 5 HOH A 31 233 57 HOH HOH . 
T 5 HOH A 32 234 62 HOH HOH . 
T 5 HOH A 33 236 63 HOH HOH . 
T 5 HOH A 34 237 67 HOH HOH . 
T 5 HOH A 35 238 68 HOH HOH . 
T 5 HOH A 36 239 75 HOH HOH . 
T 5 HOH A 37 240 76 HOH HOH . 
T 5 HOH A 38 241 77 HOH HOH . 
T 5 HOH A 39 242 79 HOH HOH . 
T 5 HOH A 40 243 80 HOH HOH . 
T 5 HOH A 41 244 82 HOH HOH . 
T 5 HOH A 42 246 84 HOH HOH . 
T 5 HOH A 43 247 88 HOH HOH . 
T 5 HOH A 44 248 90 HOH HOH . 
T 5 HOH A 45 249 91 HOH HOH . 
T 5 HOH A 46 250 92 HOH HOH . 
T 5 HOH A 47 251 94 HOH HOH . 
T 5 HOH A 48 252 96 HOH HOH . 
T 5 HOH A 49 253 98 HOH HOH . 
T 5 HOH A 50 254 106 HOH HOH . 
T 5 HOH A 51 255 107 HOH HOH . 
U 5 HOH B 1 5 5 HOH HOH . 
U 5 HOH B 2 7 7 HOH HOH . 
U 5 HOH B 3 9 9 HOH HOH . 
U 5 HOH B 4 12 12 HOH HOH . 
U 5 HOH B 5 13 13 HOH HOH . 
U 5 HOH B 6 17 17 HOH HOH . 
U 5 HOH B 7 20 20 HOH HOH . 
U 5 HOH B 8 24 24 HOH HOH . 
U 5 HOH B 9 25 25 HOH HOH . 
U 5 HOH B 10 27 27 HOH HOH . 
U 5 HOH B 11 28 28 HOH HOH . 
U 5 HOH B 12 213 1 HOH HOH . 
U 5 HOH B 13 214 6 HOH HOH . 
U 5 HOH B 14 215 30 HOH HOH . 
U 5 HOH B 15 216 31 HOH HOH . 
U 5 HOH B 16 217 32 HOH HOH . 
U 5 HOH B 17 218 35 HOH HOH . 
U 5 HOH B 18 219 37 HOH HOH . 
U 5 HOH B 19 220 38 HOH HOH . 
U 5 HOH B 20 221 41 HOH HOH . 
U 5 HOH B 21 223 44 HOH HOH . 
U 5 HOH B 22 224 48 HOH HOH . 
U 5 HOH B 23 225 50 HOH HOH . 
U 5 HOH B 24 226 51 HOH HOH . 
U 5 HOH B 25 227 52 HOH HOH . 
U 5 HOH B 26 228 55 HOH HOH . 
U 5 HOH B 27 229 58 HOH HOH . 
U 5 HOH B 28 230 59 HOH HOH . 
U 5 HOH B 29 231 60 HOH HOH . 
U 5 HOH B 30 232 61 HOH HOH . 
U 5 HOH B 31 233 64 HOH HOH . 
U 5 HOH B 32 234 65 HOH HOH . 
U 5 HOH B 33 235 66 HOH HOH . 
U 5 HOH B 34 236 69 HOH HOH . 
U 5 HOH B 35 237 70 HOH HOH . 
U 5 HOH B 36 238 71 HOH HOH . 
U 5 HOH B 37 239 72 HOH HOH . 
U 5 HOH B 38 240 73 HOH HOH . 
U 5 HOH B 39 241 74 HOH HOH . 
U 5 HOH B 40 242 78 HOH HOH . 
U 5 HOH B 41 243 81 HOH HOH . 
U 5 HOH B 42 244 85 HOH HOH . 
U 5 HOH B 43 246 86 HOH HOH . 
U 5 HOH B 44 247 87 HOH HOH . 
U 5 HOH B 45 248 89 HOH HOH . 
U 5 HOH B 46 249 93 HOH HOH . 
U 5 HOH B 47 250 95 HOH HOH . 
U 5 HOH B 48 251 97 HOH HOH . 
U 5 HOH B 49 252 99 HOH HOH . 
U 5 HOH B 50 253 100 HOH HOH . 
U 5 HOH B 51 254 101 HOH HOH . 
U 5 HOH B 52 255 102 HOH HOH . 
U 5 HOH B 53 256 103 HOH HOH . 
U 5 HOH B 54 257 104 HOH HOH . 
U 5 HOH B 55 258 105 HOH HOH . 
U 5 HOH B 56 259 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 CBJ . . . R 3 10.727 -46.634 14.032 0.8 46.95 ? O1 CBJ 245 B 1 
HETATM 2 C C2 CBJ . . . R 3 10.684 -45.638 13.284 0.8 52.45 ? C2 CBJ 245 B 1 
HETATM 3 C C3 CBJ . . . R 3 9.987 -44.524 13.853 0.8 44.64 ? C3 CBJ 245 B 1 
HETATM 4 O O4 CBJ . . . R 3 9.676 -44.519 15.036 0.8 36.81 ? O4 CBJ 245 B 1 
HETATM 5 C C5 CBJ . . . R 3 9.901 -43.515 12.801 0.8 38.12 ? C5 CBJ 245 B 1 
HETATM 6 C C6 CBJ . . . R 3 9.223 -42.371 12.969 0.8 35.24 ? C6 CBJ 245 B 1 
HETATM 7 C C7 CBJ . . . R 3 9.243 -41.523 11.911 0.8 29.8 ? C7 CBJ 245 B 1 
HETATM 8 BR BR8 CBJ . . . R 3 8.214 -40.08 12.582 0.8 30.65 ? BR8 CBJ 245 B 1 
HETATM 9 C C9 CBJ . . . R 3 9.92 -41.781 10.704 0.8 32.62 ? C9 CBJ 245 B 1 
HETATM 10 C C10 CBJ . . . R 3 10.631 -43.003 10.572 0.8 37.9 ? C10 CBJ 245 B 1 
HETATM 11 C C11 CBJ . . . R 3 10.59 -43.859 11.676 0.8 42.34 ? C11 CBJ 245 B 1 
HETATM 12 N N12 CBJ . . . R 3 11.121 -45.131 12.007 0.8 44.98 ? N12 CBJ 245 B 1 
HETATM 13 C C13 CBJ . . . R 3 11.201 -45.981 10.924 0.8 55.87 ? C13 CBJ 245 B 1 
HETATM 14 C C14 CBJ . . . R 3 11.958 -47.212 11.214 0.8 55.78 ? C14 CBJ 245 B 1 
HETATM 15 C C15 CBJ . . . R 3 11.289 -48.303 10.689 0.8 59.05 ? C15 CBJ 245 B 1 
HETATM 16 C C16 CBJ . . . R 3 11.81 -49.563 10.813 0.8 57.51 ? C16 CBJ 245 B 1 
HETATM 17 C C17 CBJ . . . R 3 13.013 -49.691 11.462 0.8 57.18 ? C17 CBJ 245 B 1 
HETATM 18 O O18 CBJ . . . R 3 13.479 -50.991 11.532 0.8 54.33 ? O18 CBJ 245 B 1 
HETATM 19 C C19 CBJ . . . R 3 14.618 -51.043 12.388 0.8 54.52 ? C19 CBJ 245 B 1 
HETATM 20 C C20 CBJ . . . R 3 15.527 -49.908 12.039 0.8 50.73 ? C20 CBJ 245 B 1 
HETATM 21 O O21 CBJ . . . R 3 14.912 -48.773 12.642 0.8 60.83 ? O21 CBJ 245 B 1 
HETATM 22 C C22 CBJ . . . R 3 13.694 -48.596 11.99 0.8 54.88 ? C22 CBJ 245 B 1 
HETATM 23 C C23 CBJ . . . R 3 13.179 -47.313 11.892 0.8 52.28 ? C23 CBJ 245 B 1 
HETATM 24 C C24 CBJ . . . R 3 13.969 -46.161 12.496 0.8 44.2 ? C24 CBJ 245 B 1 
HETATM 25 O O25 CBJ . . . R 3 14.042 -45.978 13.738 0.8 38.93 ? O25 CBJ 245 B 1 
HETATM 26 O O26 CBJ . . . R 3 14.559 -45.4 11.709 0.8 42.52 ? O26 CBJ 245 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#