data_3NG1
#
_model_server_result.job_id            j3XBg4Bf7VQgm3-8oW-RSQ 
_model_server_result.datetime_utc      '2025-07-13 06:21:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ng1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":703}' 
#
_entry.id    3NG1 
#
_exptl.entry_id    3NG1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NG1 
_cell.length_a            73.31 
_cell.length_b            99.01 
_cell.length_c            99.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NG1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,O 1 1 
B,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 11 A GLU 11 1_555 C CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc2 A OE2 GLU 11 A GLU 11 1_555 C CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc3 A OE1 GLU 33 A GLU 33 1_555 C CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc4 A OE2 GLU 33 A GLU 33 1_555 C CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc5 A OE2 GLU 46 A GLU 46 4_555 I CD CD . B CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc6 A OD1 ASP 50 A ASP 50 4_555 I CD CD . B CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? 
metalc ? metalc7 A OD2 ASP 50 A ASP 50 4_555 I CD CD . B CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc8 A NE2 HIS 261 A HIS 261 1_555 E CD CD . A CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc9 A OE1 GLU 285 A GLU 285 1_555 D CD CD . A CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc10 A OE2 GLU 285 A GLU 285 1_555 D CD CD . A CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc11 C CD CD . A CD 701 1_555 B OE2 GLU 46 B GLU 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc12 C CD CD . A CD 701 1_555 B OD1 ASP 50 B ASP 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? 
metalc ? metalc13 C CD CD . A CD 701 1_555 B OD2 ASP 50 B ASP 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc14 B OE1 GLU 11 B GLU 11 1_555 I CD CD . B CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc15 B OE2 GLU 11 B GLU 11 1_555 I CD CD . B CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc16 B OE1 GLU 33 B GLU 33 1_555 I CD CD . B CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc17 B OE2 GLU 33 B GLU 33 1_555 I CD CD . B CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc18 B NE2 HIS 261 B HIS 261 1_555 K CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc19 B OE1 GLU 285 B GLU 285 1_555 J CD CD . B CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc20 B OE2 GLU 285 B GLU 285 1_555 J CD CD . B CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3NG1 
_atom_sites.fract_transf_matrix[1][1]    0.013641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0101 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010017 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 701 701 CD CD . 
D 2 CD A 1 702 702 CD CD . 
E 2 CD A 1 703 703 CD CD . 
F 3 SO4 A 1 750 750 SO4 SO4 . 
G 4 EDO A 1 970 970 EDO EDO . 
H 4 EDO A 1 971 971 EDO EDO . 
I 2 CD B 1 701 701 CD CD . 
J 2 CD B 1 702 702 CD CD . 
K 2 CD B 1 703 703 CD CD . 
L 3 SO4 B 1 750 750 SO4 SO4 . 
M 4 EDO B 1 970 970 EDO EDO . 
N 4 EDO B 1 971 971 EDO EDO . 
O 5 HOH A 1 972 501 HOH HOH . 
O 5 HOH A 2 973 502 HOH HOH . 
O 5 HOH A 3 974 505 HOH HOH . 
O 5 HOH A 4 975 506 HOH HOH . 
O 5 HOH A 5 976 508 HOH HOH . 
O 5 HOH A 6 977 509 HOH HOH . 
O 5 HOH A 7 978 510 HOH HOH . 
O 5 HOH A 8 979 511 HOH HOH . 
O 5 HOH A 9 980 512 HOH HOH . 
O 5 HOH A 10 981 515 HOH HOH . 
O 5 HOH A 11 982 517 HOH HOH . 
O 5 HOH A 12 983 518 HOH HOH . 
O 5 HOH A 13 984 519 HOH HOH . 
O 5 HOH A 14 985 520 HOH HOH . 
O 5 HOH A 15 986 521 HOH HOH . 
O 5 HOH A 16 987 522 HOH HOH . 
O 5 HOH A 17 988 523 HOH HOH . 
O 5 HOH A 18 989 524 HOH HOH . 
O 5 HOH A 19 990 525 HOH HOH . 
O 5 HOH A 20 991 526 HOH HOH . 
O 5 HOH A 21 992 527 HOH HOH . 
O 5 HOH A 22 993 528 HOH HOH . 
O 5 HOH A 23 994 529 HOH HOH . 
O 5 HOH A 24 995 530 HOH HOH . 
O 5 HOH A 25 996 531 HOH HOH . 
O 5 HOH A 26 997 532 HOH HOH . 
O 5 HOH A 27 998 533 HOH HOH . 
O 5 HOH A 28 999 534 HOH HOH . 
O 5 HOH A 29 1000 535 HOH HOH . 
O 5 HOH A 30 1001 536 HOH HOH . 
O 5 HOH A 31 1002 537 HOH HOH . 
O 5 HOH A 32 1003 538 HOH HOH . 
O 5 HOH A 33 1004 539 HOH HOH . 
O 5 HOH A 34 1005 541 HOH HOH . 
O 5 HOH A 35 1006 542 HOH HOH . 
O 5 HOH A 36 1007 543 HOH HOH . 
O 5 HOH A 37 1008 544 HOH HOH . 
O 5 HOH A 38 1009 545 HOH HOH . 
O 5 HOH A 39 1010 546 HOH HOH . 
O 5 HOH A 40 1011 547 HOH HOH . 
O 5 HOH A 41 1012 548 HOH HOH . 
O 5 HOH A 42 1013 549 HOH HOH . 
O 5 HOH A 43 1014 550 HOH HOH . 
O 5 HOH A 44 1015 551 HOH HOH . 
O 5 HOH A 45 1016 552 HOH HOH . 
O 5 HOH A 46 1017 554 HOH HOH . 
O 5 HOH A 47 1018 559 HOH HOH . 
O 5 HOH A 48 1019 560 HOH HOH . 
O 5 HOH A 49 1020 561 HOH HOH . 
O 5 HOH A 50 1021 562 HOH HOH . 
O 5 HOH A 51 1022 563 HOH HOH . 
O 5 HOH A 52 1023 564 HOH HOH . 
O 5 HOH A 53 1024 565 HOH HOH . 
O 5 HOH A 54 1025 567 HOH HOH . 
O 5 HOH A 55 1026 568 HOH HOH . 
O 5 HOH A 56 1027 569 HOH HOH . 
O 5 HOH A 57 1028 570 HOH HOH . 
O 5 HOH A 58 1029 571 HOH HOH . 
O 5 HOH A 59 1030 572 HOH HOH . 
O 5 HOH A 60 1031 573 HOH HOH . 
O 5 HOH A 61 1032 574 HOH HOH . 
O 5 HOH A 62 1033 575 HOH HOH . 
O 5 HOH A 63 1034 576 HOH HOH . 
O 5 HOH A 64 1035 577 HOH HOH . 
O 5 HOH A 65 1036 578 HOH HOH . 
O 5 HOH A 66 1037 580 HOH HOH . 
O 5 HOH A 67 1038 581 HOH HOH . 
O 5 HOH A 68 1039 582 HOH HOH . 
O 5 HOH A 69 1040 583 HOH HOH . 
O 5 HOH A 70 1041 585 HOH HOH . 
O 5 HOH A 71 1042 586 HOH HOH . 
O 5 HOH A 72 1043 587 HOH HOH . 
O 5 HOH A 73 1044 588 HOH HOH . 
O 5 HOH A 74 1045 589 HOH HOH . 
O 5 HOH A 75 1046 590 HOH HOH . 
O 5 HOH A 76 1047 591 HOH HOH . 
O 5 HOH A 77 1048 592 HOH HOH . 
O 5 HOH A 78 1049 593 HOH HOH . 
O 5 HOH A 79 1050 594 HOH HOH . 
O 5 HOH A 80 1051 595 HOH HOH . 
O 5 HOH A 81 1052 596 HOH HOH . 
O 5 HOH A 82 1053 598 HOH HOH . 
O 5 HOH A 83 1054 599 HOH HOH . 
O 5 HOH A 84 1055 600 HOH HOH . 
O 5 HOH A 85 1056 601 HOH HOH . 
O 5 HOH A 86 1057 602 HOH HOH . 
O 5 HOH A 87 1058 603 HOH HOH . 
O 5 HOH A 88 1059 604 HOH HOH . 
O 5 HOH A 89 1060 607 HOH HOH . 
O 5 HOH A 90 1061 608 HOH HOH . 
O 5 HOH A 91 1062 610 HOH HOH . 
O 5 HOH A 92 1063 611 HOH HOH . 
O 5 HOH A 93 1064 612 HOH HOH . 
O 5 HOH A 94 1065 613 HOH HOH . 
O 5 HOH A 95 1066 562 HOH HOH . 
O 5 HOH A 96 1067 565 HOH HOH . 
O 5 HOH A 97 1068 602 HOH HOH . 
P 5 HOH B 1 972 503 HOH HOH . 
P 5 HOH B 2 973 504 HOH HOH . 
P 5 HOH B 3 974 507 HOH HOH . 
P 5 HOH B 4 975 553 HOH HOH . 
P 5 HOH B 5 976 501 HOH HOH . 
P 5 HOH B 6 977 502 HOH HOH . 
P 5 HOH B 7 978 503 HOH HOH . 
P 5 HOH B 8 979 504 HOH HOH . 
P 5 HOH B 9 980 505 HOH HOH . 
P 5 HOH B 10 981 506 HOH HOH . 
P 5 HOH B 11 982 507 HOH HOH . 
P 5 HOH B 12 983 508 HOH HOH . 
P 5 HOH B 13 984 509 HOH HOH . 
P 5 HOH B 14 985 510 HOH HOH . 
P 5 HOH B 15 986 511 HOH HOH . 
P 5 HOH B 16 987 512 HOH HOH . 
P 5 HOH B 17 988 515 HOH HOH . 
P 5 HOH B 18 989 517 HOH HOH . 
P 5 HOH B 19 990 518 HOH HOH . 
P 5 HOH B 20 991 519 HOH HOH . 
P 5 HOH B 21 992 520 HOH HOH . 
P 5 HOH B 22 993 521 HOH HOH . 
P 5 HOH B 23 994 522 HOH HOH . 
P 5 HOH B 24 995 523 HOH HOH . 
P 5 HOH B 25 996 524 HOH HOH . 
P 5 HOH B 26 997 525 HOH HOH . 
P 5 HOH B 27 998 526 HOH HOH . 
P 5 HOH B 28 999 527 HOH HOH . 
P 5 HOH B 29 1000 528 HOH HOH . 
P 5 HOH B 30 1001 529 HOH HOH . 
P 5 HOH B 31 1002 530 HOH HOH . 
P 5 HOH B 32 1003 531 HOH HOH . 
P 5 HOH B 33 1004 532 HOH HOH . 
P 5 HOH B 34 1005 533 HOH HOH . 
P 5 HOH B 35 1006 534 HOH HOH . 
P 5 HOH B 36 1007 535 HOH HOH . 
P 5 HOH B 37 1008 536 HOH HOH . 
P 5 HOH B 38 1009 537 HOH HOH . 
P 5 HOH B 39 1010 538 HOH HOH . 
P 5 HOH B 40 1011 539 HOH HOH . 
P 5 HOH B 41 1012 541 HOH HOH . 
P 5 HOH B 42 1013 542 HOH HOH . 
P 5 HOH B 43 1014 543 HOH HOH . 
P 5 HOH B 44 1015 544 HOH HOH . 
P 5 HOH B 45 1016 545 HOH HOH . 
P 5 HOH B 46 1017 546 HOH HOH . 
P 5 HOH B 47 1018 547 HOH HOH . 
P 5 HOH B 48 1019 548 HOH HOH . 
P 5 HOH B 49 1020 549 HOH HOH . 
P 5 HOH B 50 1021 550 HOH HOH . 
P 5 HOH B 51 1022 551 HOH HOH . 
P 5 HOH B 52 1023 552 HOH HOH . 
P 5 HOH B 53 1024 553 HOH HOH . 
P 5 HOH B 54 1025 554 HOH HOH . 
P 5 HOH B 55 1026 559 HOH HOH . 
P 5 HOH B 56 1027 560 HOH HOH . 
P 5 HOH B 57 1028 561 HOH HOH . 
P 5 HOH B 58 1029 563 HOH HOH . 
P 5 HOH B 59 1030 564 HOH HOH . 
P 5 HOH B 60 1031 567 HOH HOH . 
P 5 HOH B 61 1032 568 HOH HOH . 
P 5 HOH B 62 1033 569 HOH HOH . 
P 5 HOH B 63 1034 570 HOH HOH . 
P 5 HOH B 64 1035 571 HOH HOH . 
P 5 HOH B 65 1036 572 HOH HOH . 
P 5 HOH B 66 1037 573 HOH HOH . 
P 5 HOH B 67 1038 574 HOH HOH . 
P 5 HOH B 68 1039 575 HOH HOH . 
P 5 HOH B 69 1040 576 HOH HOH . 
P 5 HOH B 70 1041 577 HOH HOH . 
P 5 HOH B 71 1042 578 HOH HOH . 
P 5 HOH B 72 1043 580 HOH HOH . 
P 5 HOH B 73 1044 581 HOH HOH . 
P 5 HOH B 74 1045 582 HOH HOH . 
P 5 HOH B 75 1046 583 HOH HOH . 
P 5 HOH B 76 1047 585 HOH HOH . 
P 5 HOH B 77 1048 586 HOH HOH . 
P 5 HOH B 78 1049 587 HOH HOH . 
P 5 HOH B 79 1050 588 HOH HOH . 
P 5 HOH B 80 1051 589 HOH HOH . 
P 5 HOH B 81 1052 590 HOH HOH . 
P 5 HOH B 82 1053 591 HOH HOH . 
P 5 HOH B 83 1054 592 HOH HOH . 
P 5 HOH B 84 1055 593 HOH HOH . 
P 5 HOH B 85 1056 594 HOH HOH . 
P 5 HOH B 86 1057 595 HOH HOH . 
P 5 HOH B 87 1058 596 HOH HOH . 
P 5 HOH B 88 1059 598 HOH HOH . 
P 5 HOH B 89 1060 599 HOH HOH . 
P 5 HOH B 90 1061 600 HOH HOH . 
P 5 HOH B 91 1062 601 HOH HOH . 
P 5 HOH B 92 1063 603 HOH HOH . 
P 5 HOH B 93 1064 604 HOH HOH . 
P 5 HOH B 94 1065 607 HOH HOH . 
P 5 HOH B 95 1066 608 HOH HOH . 
P 5 HOH B 96 1067 610 HOH HOH . 
P 5 HOH B 97 1068 611 HOH HOH . 
P 5 HOH B 98 1069 612 HOH HOH . 
P 5 HOH B 99 1070 613 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               28.831 
_atom_site.Cartn_y               23.266 
_atom_site.Cartn_z               20.112 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        26.18 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           703 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#