data_3NG6 # _model_server_result.job_id 8BnGngncAZHIEMwVl6JSlQ _model_server_result.datetime_utc '2024-11-27 17:05:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ng6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 3NG6 # _exptl.entry_id 3NG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NG6 _cell.length_a 61.882 _cell.length_b 61.882 _cell.length_c 187.014 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 60 A HIS 59 1_555 E FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc2 A NE2 HIS 89 A HIS 88 1_555 E FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc4 C NE2 HIS 60 C HIS 59 1_555 G FE HEM . C HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc5 C NE2 HIS 89 C HIS 88 1_555 G FE HEM . C HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc6 D NE2 HIS 92 D HIS 92 1_555 H FE HEM . D HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 135 n n CHA C4D HEM doub 136 n n CHA HHA HEM sing 137 n n CHB C4A HEM sing 138 n n CHB C1B HEM doub 139 n n CHB HHB HEM sing 140 n n CHC C4B HEM sing 141 n n CHC C1C HEM doub 142 n n CHC HHC HEM sing 143 n n CHD C4C HEM doub 144 n n CHD C1D HEM sing 145 n n CHD HHD HEM sing 146 n n C1A C2A HEM doub 147 n y C1A NA HEM sing 148 n y C2A C3A HEM sing 149 n y C2A CAA HEM sing 150 n n C3A C4A HEM doub 151 n y C3A CMA HEM sing 152 n n C4A NA HEM sing 153 n y CMA HMA HEM sing 154 n n CMA HMAA HEM sing 155 n n CMA HMAB HEM sing 156 n n CAA CBA HEM sing 157 n n CAA HAA HEM sing 158 n n CAA HAAA HEM sing 159 n n CBA CGA HEM sing 160 n n CBA HBA HEM sing 161 n n CBA HBAA HEM sing 162 n n CGA O1A HEM doub 163 n n CGA O2A HEM sing 164 n n C1B C2B HEM sing 165 n n C1B NB HEM sing 166 n n C2B C3B HEM doub 167 n n C2B CMB HEM sing 168 n n C3B C4B HEM sing 169 n n C3B CAB HEM sing 170 n n C4B NB HEM doub 171 n n CMB HMB HEM sing 172 n n CMB HMBA HEM sing 173 n n CMB HMBB HEM sing 174 n n CAB CBB HEM doub 175 n n CAB HAB HEM sing 176 n n CBB HBB HEM sing 177 n n CBB HBBA HEM sing 178 n n C1C C2C HEM sing 179 n y C1C NC HEM sing 180 n y C2C C3C HEM doub 181 n y C2C CMC HEM sing 182 n n C3C C4C HEM sing 183 n y C3C CAC HEM sing 184 n n C4C NC HEM sing 185 n y CMC HMC HEM sing 186 n n CMC HMCA HEM sing 187 n n CMC HMCB HEM sing 188 n n CAC CBC HEM doub 189 n n CAC HAC HEM sing 190 n n CBC HBC HEM sing 191 n n CBC HBCA HEM sing 192 n n C1D C2D HEM sing 193 n n C1D ND HEM doub 194 n n C2D C3D HEM doub 195 n n C2D CMD HEM sing 196 n n C3D C4D HEM sing 197 n n C3D CAD HEM sing 198 n n C4D ND HEM sing 199 n n CMD HMD HEM sing 200 n n CMD HMDA HEM sing 201 n n CMD HMDB HEM sing 202 n n CAD CBD HEM sing 203 n n CAD HAD HEM sing 204 n n CAD HADA HEM sing 205 n n CBD CGD HEM sing 206 n n CBD HBD HEM sing 207 n n CBD HBDA HEM sing 208 n n CGD O1D HEM doub 209 n n CGD O2D HEM sing 210 n n O2A H2A HEM sing 211 n n O2D H2D HEM sing 212 n n FE NA HEM sing 213 n n FE NB HEM sing 214 n n FE NC HEM sing 215 n n FE ND HEM sing 216 n n # _atom_sites.entry_id 3NG6 _atom_sites.fract_transf_matrix[1][1] 0.01616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 200 200 HEM HEM . F 3 HEM B 1 400 400 HEM HEM . G 3 HEM C 1 600 600 HEM HEM . H 3 HEM D 1 800 800 HEM HEM . I 4 HOH A 1 1011 1011 HOH HOH . I 4 HOH A 2 1012 1012 HOH HOH . I 4 HOH A 3 1014 1014 HOH HOH . I 4 HOH A 4 1017 1017 HOH HOH . I 4 HOH A 5 1018 1018 HOH HOH . I 4 HOH A 6 1024 1024 HOH HOH . I 4 HOH A 7 1032 1032 HOH HOH . I 4 HOH A 8 1038 1038 HOH HOH . I 4 HOH A 9 1040 1040 HOH HOH . I 4 HOH A 10 1041 1041 HOH HOH . I 4 HOH A 11 1042 1042 HOH HOH . I 4 HOH A 12 1051 1051 HOH HOH . I 4 HOH A 13 1060 1060 HOH HOH . I 4 HOH A 14 1068 1068 HOH HOH . I 4 HOH A 15 1074 1074 HOH HOH . I 4 HOH A 16 1078 1078 HOH HOH . I 4 HOH A 17 1082 1082 HOH HOH . I 4 HOH A 18 1083 1083 HOH HOH . I 4 HOH A 19 1084 1084 HOH HOH . I 4 HOH A 20 1090 1090 HOH HOH . I 4 HOH A 21 1092 1092 HOH HOH . I 4 HOH A 22 1094 1094 HOH HOH . I 4 HOH A 23 1097 1097 HOH HOH . I 4 HOH A 24 1101 1101 HOH HOH . I 4 HOH A 25 1104 1104 HOH HOH . I 4 HOH A 26 1105 1105 HOH HOH . J 4 HOH B 1 1005 1005 HOH HOH . J 4 HOH B 2 1009 1009 HOH HOH . J 4 HOH B 3 1010 1010 HOH HOH . J 4 HOH B 4 1019 1019 HOH HOH . J 4 HOH B 5 1023 1023 HOH HOH . J 4 HOH B 6 1027 1027 HOH HOH . J 4 HOH B 7 1031 1031 HOH HOH . J 4 HOH B 8 1037 1037 HOH HOH . J 4 HOH B 9 1043 1043 HOH HOH . J 4 HOH B 10 1047 1047 HOH HOH . J 4 HOH B 11 1049 1049 HOH HOH . J 4 HOH B 12 1050 1050 HOH HOH . J 4 HOH B 13 1057 1057 HOH HOH . J 4 HOH B 14 1066 1066 HOH HOH . J 4 HOH B 15 1072 1072 HOH HOH . J 4 HOH B 16 1079 1079 HOH HOH . J 4 HOH B 17 1080 1080 HOH HOH . J 4 HOH B 18 1091 1091 HOH HOH . J 4 HOH B 19 1093 1093 HOH HOH . J 4 HOH B 20 1102 1102 HOH HOH . K 4 HOH C 1 1003 1003 HOH HOH . K 4 HOH C 2 1006 1006 HOH HOH . K 4 HOH C 3 1007 1007 HOH HOH . K 4 HOH C 4 1013 1013 HOH HOH . K 4 HOH C 5 1015 1015 HOH HOH . K 4 HOH C 6 1016 1016 HOH HOH . K 4 HOH C 7 1020 1020 HOH HOH . K 4 HOH C 8 1021 1021 HOH HOH . K 4 HOH C 9 1026 1026 HOH HOH . K 4 HOH C 10 1028 1028 HOH HOH . K 4 HOH C 11 1029 1029 HOH HOH . K 4 HOH C 12 1030 1030 HOH HOH . K 4 HOH C 13 1033 1033 HOH HOH . K 4 HOH C 14 1034 1034 HOH HOH . K 4 HOH C 15 1036 1036 HOH HOH . K 4 HOH C 16 1039 1039 HOH HOH . K 4 HOH C 17 1048 1048 HOH HOH . K 4 HOH C 18 1052 1052 HOH HOH . K 4 HOH C 19 1053 1053 HOH HOH . K 4 HOH C 20 1055 1055 HOH HOH . K 4 HOH C 21 1056 1056 HOH HOH . K 4 HOH C 22 1061 1061 HOH HOH . K 4 HOH C 23 1062 1062 HOH HOH . K 4 HOH C 24 1071 1071 HOH HOH . K 4 HOH C 25 1081 1081 HOH HOH . K 4 HOH C 26 1085 1085 HOH HOH . K 4 HOH C 27 1095 1095 HOH HOH . K 4 HOH C 28 1098 1098 HOH HOH . L 4 HOH D 1 1001 1001 HOH HOH . L 4 HOH D 2 1002 1002 HOH HOH . L 4 HOH D 3 1004 1004 HOH HOH . L 4 HOH D 4 1008 1008 HOH HOH . L 4 HOH D 5 1022 1022 HOH HOH . L 4 HOH D 6 1025 1025 HOH HOH . L 4 HOH D 7 1035 1035 HOH HOH . L 4 HOH D 8 1044 1044 HOH HOH . L 4 HOH D 9 1045 1045 HOH HOH . L 4 HOH D 10 1046 1046 HOH HOH . L 4 HOH D 11 1054 1054 HOH HOH . L 4 HOH D 12 1058 1058 HOH HOH . L 4 HOH D 13 1059 1059 HOH HOH . L 4 HOH D 14 1063 1063 HOH HOH . L 4 HOH D 15 1064 1064 HOH HOH . L 4 HOH D 16 1065 1065 HOH HOH . L 4 HOH D 17 1067 1067 HOH HOH . L 4 HOH D 18 1069 1069 HOH HOH . L 4 HOH D 19 1070 1070 HOH HOH . L 4 HOH D 20 1073 1073 HOH HOH . L 4 HOH D 21 1075 1075 HOH HOH . L 4 HOH D 22 1076 1076 HOH HOH . L 4 HOH D 23 1077 1077 HOH HOH . L 4 HOH D 24 1086 1086 HOH HOH . L 4 HOH D 25 1087 1087 HOH HOH . L 4 HOH D 26 1088 1088 HOH HOH . L 4 HOH D 27 1089 1089 HOH HOH . L 4 HOH D 28 1096 1096 HOH HOH . L 4 HOH D 29 1099 1099 HOH HOH . L 4 HOH D 30 1100 1100 HOH HOH . L 4 HOH D 31 1103 1103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 3 43.515 37.392 -19.276 1 56.79 ? CHA HEM 600 C 1 HETATM 2 C CHB HEM . . . G 3 40.96 37.043 -15.194 1 50.18 ? CHB HEM 600 C 1 HETATM 3 C CHC HEM . . . G 3 44.753 38.675 -12.68 1 45.08 ? CHC HEM 600 C 1 HETATM 4 C CHD HEM . . . G 3 47.278 39.119 -16.774 1 46.86 ? CHD HEM 600 C 1 HETATM 5 C C1A HEM . . . G 3 42.483 37.15 -18.395 1 56.88 ? C1A HEM 600 C 1 HETATM 6 C C2A HEM . . . G 3 41.164 36.665 -18.742 1 56.56 ? C2A HEM 600 C 1 HETATM 7 C C3A HEM . . . G 3 40.456 36.58 -17.613 1 54.54 ? C3A HEM 600 C 1 HETATM 8 C C4A HEM . . . G 3 41.309 37.019 -16.527 1 52.92 ? C4A HEM 600 C 1 HETATM 9 C CMA HEM . . . G 3 39.005 36.096 -17.41 1 50.55 ? CMA HEM 600 C 1 HETATM 10 C CAA HEM . . . G 3 40.726 36.35 -20.186 1 60.54 ? CAA HEM 600 C 1 HETATM 11 C CBA HEM . . . G 3 41.296 35.113 -20.873 1 65.16 ? CBA HEM 600 C 1 HETATM 12 C CGA HEM . . . G 3 40.322 34.339 -21.73 1 68.13 ? CGA HEM 600 C 1 HETATM 13 O O1A HEM . . . G 3 40.77 33.798 -22.77 1 65.69 ? O1A HEM 600 C 1 HETATM 14 O O2A HEM . . . G 3 39.129 34.301 -21.327 1 76.92 ? O2A HEM 600 C 1 HETATM 15 C C1B HEM . . . G 3 41.762 37.469 -14.157 1 50.03 ? C1B HEM 600 C 1 HETATM 16 C C2B HEM . . . G 3 41.383 37.494 -12.758 1 50.08 ? C2B HEM 600 C 1 HETATM 17 C C3B HEM . . . G 3 42.416 37.976 -12.068 1 46.85 ? C3B HEM 600 C 1 HETATM 18 C C4B HEM . . . G 3 43.486 38.243 -13.011 1 46.45 ? C4B HEM 600 C 1 HETATM 19 C CMB HEM . . . G 3 39.997 37.031 -12.255 1 54.48 ? CMB HEM 600 C 1 HETATM 20 C CAB HEM . . . G 3 42.572 38.171 -10.546 1 46.83 ? CAB HEM 600 C 1 HETATM 21 C CBB HEM . . . G 3 41.549 38.613 -9.812 1 52.29 ? CBB HEM 600 C 1 HETATM 22 C C1C HEM . . . G 3 45.778 38.924 -13.566 1 43.8 ? C1C HEM 600 C 1 HETATM 23 C C2C HEM . . . G 3 47.063 39.499 -13.225 1 43.04 ? C2C HEM 600 C 1 HETATM 24 C C3C HEM . . . G 3 47.756 39.638 -14.355 1 45.13 ? C3C HEM 600 C 1 HETATM 25 C C4C HEM . . . G 3 46.924 39.158 -15.442 1 45.16 ? C4C HEM 600 C 1 HETATM 26 C CMC HEM . . . G 3 47.471 39.841 -11.775 1 43.47 ? CMC HEM 600 C 1 HETATM 27 C CAC HEM . . . G 3 49.171 40.221 -14.566 1 47.2 ? CAC HEM 600 C 1 HETATM 28 C CBC HEM . . . G 3 49.57 41.289 -13.861 1 45.84 ? CBC HEM 600 C 1 HETATM 29 C C1D HEM . . . G 3 46.458 38.741 -17.817 1 50.78 ? C1D HEM 600 C 1 HETATM 30 C C2D HEM . . . G 3 46.76 38.884 -19.227 1 50.91 ? C2D HEM 600 C 1 HETATM 31 C C3D HEM . . . G 3 45.716 38.416 -19.912 1 56.33 ? C3D HEM 600 C 1 HETATM 32 C C4D HEM . . . G 3 44.734 37.949 -18.953 1 55.38 ? C4D HEM 600 C 1 HETATM 33 C CMD HEM . . . G 3 48.09 39.458 -19.763 1 38.42 ? CMD HEM 600 C 1 HETATM 34 C CAD HEM . . . G 3 45.504 38.349 -21.439 1 63.2 ? CAD HEM 600 C 1 HETATM 35 C CBD HEM . . . G 3 44.286 39.041 -22.032 1 69.56 ? CBD HEM 600 C 1 HETATM 36 C CGD HEM . . . G 3 44.426 40.502 -22.35 1 72.5 ? CGD HEM 600 C 1 HETATM 37 O O1D HEM . . . G 3 43.843 41.314 -21.583 1 74.93 ? O1D HEM 600 C 1 HETATM 38 O O2D HEM . . . G 3 45.115 40.81 -23.36 1 76.33 ? O2D HEM 600 C 1 HETATM 39 N NA HEM . . . G 3 42.557 37.346 -17.026 1 55.07 ? NA HEM 600 C 1 HETATM 40 N NB HEM . . . G 3 43.065 37.922 -14.289 1 46.19 ? NB HEM 600 C 1 HETATM 41 N NC HEM . . . G 3 45.715 38.716 -14.932 1 45.14 ? NC HEM 600 C 1 HETATM 42 N ND HEM . . . G 3 45.202 38.17 -17.673 1 52.83 ? ND HEM 600 C 1 HETATM 43 FE FE HEM . . . G 3 44.193 37.862 -15.963 1 53.07 ? FE HEM 600 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #