data_3NGA
#
_model_server_result.job_id            WEeVNJKwW4u46OUAsS5juQ 
_model_server_result.datetime_utc      '2024-10-12 17:21:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nga 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    3NGA 
#
_exptl.entry_id    3NGA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              349.77 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NGA 
_cell.length_a            127.64 
_cell.length_b            127.64 
_cell.length_c            125.75 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NGA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
_chem_comp.formula           'C19 H12 Cl N3 O2' 
_chem_comp.formula_weight    349.77 
_chem_comp.id                3NG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 3NG doub 1 n y 
C1 N9 3NG sing 2 n y 
C1 C6 3NG sing 3 n y 
C2 C3 3NG sing 4 n y 
C8 C2 3NG sing 5 n y 
C3 C4 3NG doub 6 n y 
C3 H3 3NG sing 7 n n 
C4 C5 3NG sing 8 n y 
C4 H4 3NG sing 9 n n 
C5 C6 3NG doub 10 n y 
C5 C23 3NG sing 11 n n 
C6 H6 3NG sing 12 n n 
C14 C7 3NG sing 13 n y 
C10 C7 3NG sing 14 n y 
C7 C8 3NG doub 15 n y 
C8 C13 3NG sing 16 n y 
C10 N9 3NG doub 17 n y 
N15 C10 3NG sing 18 n n 
C14 C11 3NG doub 19 n y 
C11 N12 3NG sing 20 n y 
C11 H11 3NG sing 21 n n 
N12 C13 3NG doub 22 n y 
C13 H13 3NG sing 23 n n 
C14 H14 3NG sing 24 n n 
C16 N15 3NG sing 25 n n 
N15 HN15 3NG sing 26 n n 
C21 C16 3NG doub 27 n y 
C16 C17 3NG sing 28 n y 
C18 C17 3NG doub 29 n y 
C17 H17 3NG sing 30 n n 
C19 C18 3NG sing 31 n y 
C18 CL22 3NG sing 32 n n 
C20 C19 3NG doub 33 n y 
C19 H19 3NG sing 34 n n 
C20 C21 3NG sing 35 n y 
C20 H20 3NG sing 36 n n 
C21 H21 3NG sing 37 n n 
O24 C23 3NG doub 38 n n 
C23 O25 3NG sing 39 n n 
O25 HO25 3NG sing 40 n n 
#
_atom_sites.entry_id                     3NGA 
_atom_sites.fract_transf_matrix[1][1]    0.007835 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007835 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007952 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3NG A 1 1000 1000 3NG 3NG . 
D 3 SO4 A 1 3000 3000 SO4 SO4 . 
E 3 SO4 A 1 3001 3001 SO4 SO4 . 
F 3 SO4 A 1 3005 3005 SO4 SO4 . 
G 3 SO4 A 1 3007 3007 SO4 SO4 . 
H 2 3NG B 1 1000 1000 3NG 3NG . 
I 3 SO4 B 1 3002 3002 SO4 SO4 . 
J 3 SO4 B 1 3003 3003 SO4 SO4 . 
K 3 SO4 B 1 3004 3004 SO4 SO4 . 
L 4 HOH A 1 334 13 HOH HOH . 
L 4 HOH A 2 335 15 HOH HOH . 
L 4 HOH A 3 336 16 HOH HOH . 
L 4 HOH A 4 337 17 HOH HOH . 
L 4 HOH A 5 338 19 HOH HOH . 
L 4 HOH A 6 339 20 HOH HOH . 
L 4 HOH A 7 340 22 HOH HOH . 
L 4 HOH A 8 341 23 HOH HOH . 
L 4 HOH A 9 342 24 HOH HOH . 
L 4 HOH A 10 343 25 HOH HOH . 
L 4 HOH A 11 344 26 HOH HOH . 
L 4 HOH A 12 345 27 HOH HOH . 
L 4 HOH A 13 346 28 HOH HOH . 
L 4 HOH A 14 347 29 HOH HOH . 
L 4 HOH A 15 348 30 HOH HOH . 
L 4 HOH A 16 349 37 HOH HOH . 
L 4 HOH A 17 350 40 HOH HOH . 
L 4 HOH A 18 351 41 HOH HOH . 
L 4 HOH A 19 352 47 HOH HOH . 
L 4 HOH A 20 353 48 HOH HOH . 
L 4 HOH A 21 354 49 HOH HOH . 
L 4 HOH A 22 355 50 HOH HOH . 
L 4 HOH A 23 356 52 HOH HOH . 
L 4 HOH A 24 357 57 HOH HOH . 
L 4 HOH A 25 358 60 HOH HOH . 
L 4 HOH A 26 359 61 HOH HOH . 
L 4 HOH A 27 360 64 HOH HOH . 
L 4 HOH A 28 361 67 HOH HOH . 
L 4 HOH A 29 362 69 HOH HOH . 
L 4 HOH A 30 363 70 HOH HOH . 
L 4 HOH A 31 364 71 HOH HOH . 
L 4 HOH A 32 365 72 HOH HOH . 
L 4 HOH A 33 366 80 HOH HOH . 
L 4 HOH A 34 367 81 HOH HOH . 
L 4 HOH A 35 368 88 HOH HOH . 
L 4 HOH A 36 369 89 HOH HOH . 
L 4 HOH A 37 370 90 HOH HOH . 
L 4 HOH A 38 371 91 HOH HOH . 
L 4 HOH A 39 372 92 HOH HOH . 
L 4 HOH A 40 373 93 HOH HOH . 
L 4 HOH A 41 374 99 HOH HOH . 
L 4 HOH A 42 375 100 HOH HOH . 
L 4 HOH A 43 376 101 HOH HOH . 
L 4 HOH A 44 377 102 HOH HOH . 
L 4 HOH A 45 378 104 HOH HOH . 
L 4 HOH A 46 379 108 HOH HOH . 
L 4 HOH A 47 380 109 HOH HOH . 
L 4 HOH A 48 381 112 HOH HOH . 
L 4 HOH A 49 382 114 HOH HOH . 
L 4 HOH A 50 383 115 HOH HOH . 
L 4 HOH A 51 384 8 HOH HOH . 
M 4 HOH B 1 334 2 HOH HOH . 
M 4 HOH B 2 335 3 HOH HOH . 
M 4 HOH B 3 336 4 HOH HOH . 
M 4 HOH B 4 337 5 HOH HOH . 
M 4 HOH B 5 338 6 HOH HOH . 
M 4 HOH B 6 339 7 HOH HOH . 
M 4 HOH B 7 340 9 HOH HOH . 
M 4 HOH B 8 341 10 HOH HOH . 
M 4 HOH B 9 342 11 HOH HOH . 
M 4 HOH B 10 343 12 HOH HOH . 
M 4 HOH B 11 344 14 HOH HOH . 
M 4 HOH B 12 345 18 HOH HOH . 
M 4 HOH B 13 346 21 HOH HOH . 
M 4 HOH B 14 347 31 HOH HOH . 
M 4 HOH B 15 348 32 HOH HOH . 
M 4 HOH B 16 349 33 HOH HOH . 
M 4 HOH B 17 350 34 HOH HOH . 
M 4 HOH B 18 351 35 HOH HOH . 
M 4 HOH B 19 352 36 HOH HOH . 
M 4 HOH B 20 353 38 HOH HOH . 
M 4 HOH B 21 354 39 HOH HOH . 
M 4 HOH B 22 355 42 HOH HOH . 
M 4 HOH B 23 356 43 HOH HOH . 
M 4 HOH B 24 357 44 HOH HOH . 
M 4 HOH B 25 358 45 HOH HOH . 
M 4 HOH B 26 359 46 HOH HOH . 
M 4 HOH B 27 360 51 HOH HOH . 
M 4 HOH B 28 361 53 HOH HOH . 
M 4 HOH B 29 362 54 HOH HOH . 
M 4 HOH B 30 363 55 HOH HOH . 
M 4 HOH B 31 364 56 HOH HOH . 
M 4 HOH B 32 365 58 HOH HOH . 
M 4 HOH B 33 366 59 HOH HOH . 
M 4 HOH B 34 367 62 HOH HOH . 
M 4 HOH B 35 368 63 HOH HOH . 
M 4 HOH B 36 369 65 HOH HOH . 
M 4 HOH B 37 370 66 HOH HOH . 
M 4 HOH B 38 371 68 HOH HOH . 
M 4 HOH B 39 372 73 HOH HOH . 
M 4 HOH B 40 373 74 HOH HOH . 
M 4 HOH B 41 374 75 HOH HOH . 
M 4 HOH B 42 375 76 HOH HOH . 
M 4 HOH B 43 376 77 HOH HOH . 
M 4 HOH B 44 377 78 HOH HOH . 
M 4 HOH B 45 378 79 HOH HOH . 
M 4 HOH B 46 379 82 HOH HOH . 
M 4 HOH B 47 380 83 HOH HOH . 
M 4 HOH B 48 381 84 HOH HOH . 
M 4 HOH B 49 382 85 HOH HOH . 
M 4 HOH B 50 383 86 HOH HOH . 
M 4 HOH B 51 384 87 HOH HOH . 
M 4 HOH B 52 385 94 HOH HOH . 
M 4 HOH B 53 386 95 HOH HOH . 
M 4 HOH B 54 387 96 HOH HOH . 
M 4 HOH B 55 388 97 HOH HOH . 
M 4 HOH B 56 389 98 HOH HOH . 
M 4 HOH B 57 390 103 HOH HOH . 
M 4 HOH B 58 391 105 HOH HOH . 
M 4 HOH B 59 392 106 HOH HOH . 
M 4 HOH B 60 393 107 HOH HOH . 
M 4 HOH B 61 394 110 HOH HOH . 
M 4 HOH B 62 395 111 HOH HOH . 
M 4 HOH B 63 396 113 HOH HOH . 
M 4 HOH B 64 397 116 HOH HOH . 
M 4 HOH B 65 398 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3NG . . . C 2 46.187 -4.719 37.631 1 36.47 ? C1 3NG 1000 A 1 
HETATM 2 C C2 3NG . . . C 2 45.151 -5.553 38.122 1 37.21 ? C2 3NG 1000 A 1 
HETATM 3 C C3 3NG . . . C 2 44.811 -5.515 39.498 1 37.82 ? C3 3NG 1000 A 1 
HETATM 4 C C4 3NG . . . C 2 45.465 -4.655 40.364 1 37.26 ? C4 3NG 1000 A 1 
HETATM 5 C C5 3NG . . . C 2 46.495 -3.837 39.886 1 34.55 ? C5 3NG 1000 A 1 
HETATM 6 C C6 3NG . . . C 2 46.865 -3.889 38.544 1 33.6 ? C6 3NG 1000 A 1 
HETATM 7 C C7 3NG . . . C 2 44.92 -6.345 35.823 1 42.97 ? C7 3NG 1000 A 1 
HETATM 8 C C8 3NG . . . C 2 44.509 -6.391 37.188 1 40.13 ? C8 3NG 1000 A 1 
HETATM 9 N N9 3NG . . . C 2 46.57 -4.675 36.335 1 38.44 ? N9 3NG 1000 A 1 
HETATM 10 C C10 3NG . . . C 2 45.974 -5.454 35.449 1 41.2 ? C10 3NG 1000 A 1 
HETATM 11 C C11 3NG . . . C 2 43.242 -8.008 35.348 1 45.92 ? C11 3NG 1000 A 1 
HETATM 12 N N12 3NG . . . C 2 42.843 -8.085 36.637 1 43.03 ? N12 3NG 1000 A 1 
HETATM 13 C C13 3NG . . . C 2 43.465 -7.271 37.514 1 39.63 ? C13 3NG 1000 A 1 
HETATM 14 C C14 3NG . . . C 2 44.267 -7.194 34.899 1 44.95 ? C14 3NG 1000 A 1 
HETATM 15 N N15 3NG . . . C 2 46.375 -5.396 34.165 1 44.73 ? N15 3NG 1000 A 1 
HETATM 16 C C16 3NG . . . C 2 47.354 -4.625 33.53 1 45.95 ? C16 3NG 1000 A 1 
HETATM 17 C C17 3NG . . . C 2 48.582 -4.283 34.091 1 49.21 ? C17 3NG 1000 A 1 
HETATM 18 C C18 3NG . . . C 2 49.485 -3.524 33.333 1 59.58 ? C18 3NG 1000 A 1 
HETATM 19 C C19 3NG . . . C 2 49.202 -3.136 32.028 1 52.18 ? C19 3NG 1000 A 1 
HETATM 20 C C20 3NG . . . C 2 47.979 -3.473 31.475 1 51.3 ? C20 3NG 1000 A 1 
HETATM 21 C C21 3NG . . . C 2 47.067 -4.218 32.216 1 47.64 ? C21 3NG 1000 A 1 
HETATM 22 CL CL22 3NG . . . C 2 50.988 -3.052 34.007 1 78.57 ? CL22 3NG 1000 A 1 
HETATM 23 C C23 3NG . . . C 2 47.178 -2.882 40.776 1 36.47 ? C23 3NG 1000 A 1 
HETATM 24 O O24 3NG . . . C 2 48.302 -2.438 40.351 1 36.79 ? O24 3NG 1000 A 1 
HETATM 25 O O25 3NG . . . C 2 46.556 -2.546 41.845 1 36.2 ? O25 3NG 1000 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#