data_3NGQ
#
_model_server_result.job_id            v1O2gL3tK-ZJaEOkC67Clg 
_model_server_result.datetime_utc      '2025-07-03 23:06:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ngq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":558}' 
#
_entry.id    3NGQ 
#
_exptl.entry_id    3NGQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NGQ 
_cell.length_a            77.152 
_cell.length_b            77.152 
_cell.length_c            165.897 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NGQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 83 A GLU 240 1_555 C MG MG . A MG 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc2 A OD2 ASP 253 A ASP 410 1_555 D MG MG . A MG 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc3 C MG MG . A MG 557 1_555 E O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc4 C MG MG . A MG 557 1_555 E O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc5 C MG MG . A MG 557 1_555 E O HOH . A HOH 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3NGQ 
_atom_sites.fract_transf_matrix[1][1]    0.012961 
_atom_sites.fract_transf_matrix[1][2]    0.007483 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014967 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 1PS A 1 556 543 1PS 1PS . 
C 3 MG A 1 557 544 MG MG . 
D 3 MG A 1 558 545 MG MG . 
E 4 HOH A 1 559 559 HOH HOH . 
E 4 HOH A 2 560 560 HOH HOH . 
E 4 HOH A 3 561 561 HOH HOH . 
E 4 HOH A 4 562 562 HOH HOH . 
E 4 HOH A 5 563 563 HOH HOH . 
E 4 HOH A 6 564 564 HOH HOH . 
E 4 HOH A 7 565 565 HOH HOH . 
E 4 HOH A 8 566 566 HOH HOH . 
E 4 HOH A 9 567 567 HOH HOH . 
E 4 HOH A 10 568 568 HOH HOH . 
E 4 HOH A 11 569 569 HOH HOH . 
E 4 HOH A 12 570 570 HOH HOH . 
E 4 HOH A 13 571 571 HOH HOH . 
E 4 HOH A 14 572 572 HOH HOH . 
E 4 HOH A 15 573 573 HOH HOH . 
E 4 HOH A 16 574 574 HOH HOH . 
E 4 HOH A 17 575 575 HOH HOH . 
E 4 HOH A 18 576 576 HOH HOH . 
E 4 HOH A 19 577 577 HOH HOH . 
E 4 HOH A 20 578 578 HOH HOH . 
E 4 HOH A 21 579 579 HOH HOH . 
E 4 HOH A 22 580 580 HOH HOH . 
E 4 HOH A 23 581 581 HOH HOH . 
E 4 HOH A 24 582 582 HOH HOH . 
E 4 HOH A 25 583 583 HOH HOH . 
E 4 HOH A 26 584 546 HOH HOH . 
E 4 HOH A 27 585 585 HOH HOH . 
E 4 HOH A 28 586 586 HOH HOH . 
E 4 HOH A 29 587 587 HOH HOH . 
E 4 HOH A 30 588 588 HOH HOH . 
E 4 HOH A 31 589 589 HOH HOH . 
E 4 HOH A 32 590 590 HOH HOH . 
E 4 HOH A 33 591 591 HOH HOH . 
E 4 HOH A 34 592 592 HOH HOH . 
E 4 HOH A 35 593 593 HOH HOH . 
E 4 HOH A 36 594 594 HOH HOH . 
E 4 HOH A 37 595 595 HOH HOH . 
E 4 HOH A 38 596 596 HOH HOH . 
E 4 HOH A 39 597 597 HOH HOH . 
E 4 HOH A 40 598 598 HOH HOH . 
E 4 HOH A 41 599 599 HOH HOH . 
E 4 HOH A 42 600 600 HOH HOH . 
E 4 HOH A 43 601 601 HOH HOH . 
E 4 HOH A 44 602 602 HOH HOH . 
E 4 HOH A 45 603 603 HOH HOH . 
E 4 HOH A 46 604 604 HOH HOH . 
E 4 HOH A 47 605 605 HOH HOH . 
E 4 HOH A 48 606 606 HOH HOH . 
E 4 HOH A 49 607 607 HOH HOH . 
E 4 HOH A 50 608 608 HOH HOH . 
E 4 HOH A 51 609 609 HOH HOH . 
E 4 HOH A 52 610 610 HOH HOH . 
E 4 HOH A 53 611 611 HOH HOH . 
E 4 HOH A 54 612 612 HOH HOH . 
E 4 HOH A 55 613 613 HOH HOH . 
E 4 HOH A 56 614 614 HOH HOH . 
E 4 HOH A 57 615 615 HOH HOH . 
E 4 HOH A 58 616 616 HOH HOH . 
E 4 HOH A 59 617 617 HOH HOH . 
E 4 HOH A 60 618 618 HOH HOH . 
E 4 HOH A 61 619 619 HOH HOH . 
E 4 HOH A 62 620 620 HOH HOH . 
E 4 HOH A 63 621 621 HOH HOH . 
E 4 HOH A 64 622 622 HOH HOH . 
E 4 HOH A 65 623 547 HOH HOH . 
E 4 HOH A 66 624 624 HOH HOH . 
E 4 HOH A 67 625 625 HOH HOH . 
E 4 HOH A 68 626 626 HOH HOH . 
E 4 HOH A 69 627 627 HOH HOH . 
E 4 HOH A 70 628 628 HOH HOH . 
E 4 HOH A 71 629 629 HOH HOH . 
E 4 HOH A 72 630 630 HOH HOH . 
E 4 HOH A 73 631 548 HOH HOH . 
E 4 HOH A 74 632 632 HOH HOH . 
E 4 HOH A 75 633 633 HOH HOH . 
E 4 HOH A 76 634 634 HOH HOH . 
E 4 HOH A 77 635 635 HOH HOH . 
E 4 HOH A 78 636 636 HOH HOH . 
E 4 HOH A 79 637 637 HOH HOH . 
E 4 HOH A 80 638 638 HOH HOH . 
E 4 HOH A 81 639 639 HOH HOH . 
E 4 HOH A 82 640 640 HOH HOH . 
E 4 HOH A 83 641 641 HOH HOH . 
E 4 HOH A 84 642 642 HOH HOH . 
E 4 HOH A 85 643 643 HOH HOH . 
E 4 HOH A 86 644 644 HOH HOH . 
E 4 HOH A 87 645 645 HOH HOH . 
E 4 HOH A 88 646 646 HOH HOH . 
E 4 HOH A 89 647 647 HOH HOH . 
E 4 HOH A 90 648 648 HOH HOH . 
E 4 HOH A 91 649 649 HOH HOH . 
E 4 HOH A 92 650 549 HOH HOH . 
E 4 HOH A 93 651 651 HOH HOH . 
E 4 HOH A 94 652 652 HOH HOH . 
E 4 HOH A 95 653 653 HOH HOH . 
E 4 HOH A 96 654 654 HOH HOH . 
E 4 HOH A 97 655 655 HOH HOH . 
E 4 HOH A 98 656 656 HOH HOH . 
E 4 HOH A 99 657 657 HOH HOH . 
E 4 HOH A 100 658 658 HOH HOH . 
E 4 HOH A 101 659 659 HOH HOH . 
E 4 HOH A 102 660 660 HOH HOH . 
E 4 HOH A 103 661 661 HOH HOH . 
E 4 HOH A 104 662 662 HOH HOH . 
E 4 HOH A 105 663 663 HOH HOH . 
E 4 HOH A 106 664 664 HOH HOH . 
E 4 HOH A 107 665 665 HOH HOH . 
E 4 HOH A 108 666 666 HOH HOH . 
E 4 HOH A 109 667 667 HOH HOH . 
E 4 HOH A 110 668 668 HOH HOH . 
E 4 HOH A 111 669 669 HOH HOH . 
E 4 HOH A 112 670 670 HOH HOH . 
E 4 HOH A 113 671 671 HOH HOH . 
E 4 HOH A 114 672 672 HOH HOH . 
E 4 HOH A 115 673 673 HOH HOH . 
E 4 HOH A 116 674 674 HOH HOH . 
E 4 HOH A 117 675 550 HOH HOH . 
E 4 HOH A 118 676 676 HOH HOH . 
E 4 HOH A 119 677 677 HOH HOH . 
E 4 HOH A 120 678 678 HOH HOH . 
E 4 HOH A 121 679 551 HOH HOH . 
E 4 HOH A 122 680 680 HOH HOH . 
E 4 HOH A 123 681 681 HOH HOH . 
E 4 HOH A 124 682 682 HOH HOH . 
E 4 HOH A 125 683 683 HOH HOH . 
E 4 HOH A 126 684 684 HOH HOH . 
E 4 HOH A 127 685 685 HOH HOH . 
E 4 HOH A 128 686 686 HOH HOH . 
E 4 HOH A 129 687 687 HOH HOH . 
E 4 HOH A 130 688 688 HOH HOH . 
E 4 HOH A 131 689 689 HOH HOH . 
E 4 HOH A 132 690 690 HOH HOH . 
E 4 HOH A 133 691 691 HOH HOH . 
E 4 HOH A 134 692 692 HOH HOH . 
E 4 HOH A 135 693 693 HOH HOH . 
E 4 HOH A 136 694 694 HOH HOH . 
E 4 HOH A 137 695 552 HOH HOH . 
E 4 HOH A 138 696 696 HOH HOH . 
E 4 HOH A 139 697 697 HOH HOH . 
E 4 HOH A 140 698 698 HOH HOH . 
E 4 HOH A 141 699 699 HOH HOH . 
E 4 HOH A 142 700 700 HOH HOH . 
E 4 HOH A 143 701 701 HOH HOH . 
E 4 HOH A 144 702 702 HOH HOH . 
E 4 HOH A 145 703 703 HOH HOH . 
E 4 HOH A 146 704 704 HOH HOH . 
E 4 HOH A 147 705 705 HOH HOH . 
E 4 HOH A 148 706 706 HOH HOH . 
E 4 HOH A 149 707 707 HOH HOH . 
E 4 HOH A 150 708 708 HOH HOH . 
E 4 HOH A 151 709 709 HOH HOH . 
E 4 HOH A 152 710 710 HOH HOH . 
E 4 HOH A 153 711 711 HOH HOH . 
E 4 HOH A 154 712 712 HOH HOH . 
E 4 HOH A 155 713 713 HOH HOH . 
E 4 HOH A 156 714 714 HOH HOH . 
E 4 HOH A 157 715 715 HOH HOH . 
E 4 HOH A 158 716 716 HOH HOH . 
E 4 HOH A 159 717 553 HOH HOH . 
E 4 HOH A 160 718 718 HOH HOH . 
E 4 HOH A 161 719 719 HOH HOH . 
E 4 HOH A 162 720 720 HOH HOH . 
E 4 HOH A 163 721 721 HOH HOH . 
E 4 HOH A 164 722 722 HOH HOH . 
E 4 HOH A 165 723 723 HOH HOH . 
E 4 HOH A 166 724 724 HOH HOH . 
E 4 HOH A 167 725 725 HOH HOH . 
E 4 HOH A 168 726 726 HOH HOH . 
E 4 HOH A 169 727 727 HOH HOH . 
E 4 HOH A 170 728 728 HOH HOH . 
E 4 HOH A 171 729 729 HOH HOH . 
E 4 HOH A 172 730 730 HOH HOH . 
E 4 HOH A 173 731 731 HOH HOH . 
E 4 HOH A 174 732 732 HOH HOH . 
E 4 HOH A 175 733 733 HOH HOH . 
E 4 HOH A 176 734 734 HOH HOH . 
E 4 HOH A 177 735 735 HOH HOH . 
E 4 HOH A 178 736 736 HOH HOH . 
E 4 HOH A 179 737 737 HOH HOH . 
E 4 HOH A 180 738 738 HOH HOH . 
E 4 HOH A 181 739 739 HOH HOH . 
E 4 HOH A 182 740 740 HOH HOH . 
E 4 HOH A 183 741 741 HOH HOH . 
E 4 HOH A 184 742 742 HOH HOH . 
E 4 HOH A 185 743 743 HOH HOH . 
E 4 HOH A 186 744 744 HOH HOH . 
E 4 HOH A 187 745 745 HOH HOH . 
E 4 HOH A 188 746 746 HOH HOH . 
E 4 HOH A 189 747 747 HOH HOH . 
E 4 HOH A 190 748 748 HOH HOH . 
E 4 HOH A 191 749 749 HOH HOH . 
E 4 HOH A 192 750 750 HOH HOH . 
E 4 HOH A 193 751 751 HOH HOH . 
E 4 HOH A 194 752 752 HOH HOH . 
E 4 HOH A 195 753 753 HOH HOH . 
E 4 HOH A 196 754 754 HOH HOH . 
E 4 HOH A 197 755 755 HOH HOH . 
E 4 HOH A 198 756 756 HOH HOH . 
E 4 HOH A 199 757 554 HOH HOH . 
E 4 HOH A 200 758 758 HOH HOH . 
E 4 HOH A 201 759 759 HOH HOH . 
E 4 HOH A 202 760 760 HOH HOH . 
E 4 HOH A 203 761 761 HOH HOH . 
E 4 HOH A 204 762 762 HOH HOH . 
E 4 HOH A 205 763 763 HOH HOH . 
E 4 HOH A 206 764 764 HOH HOH . 
E 4 HOH A 207 765 765 HOH HOH . 
E 4 HOH A 208 766 766 HOH HOH . 
E 4 HOH A 209 767 767 HOH HOH . 
E 4 HOH A 210 768 768 HOH HOH . 
E 4 HOH A 211 769 769 HOH HOH . 
E 4 HOH A 212 770 770 HOH HOH . 
E 4 HOH A 213 771 771 HOH HOH . 
E 4 HOH A 214 772 772 HOH HOH . 
E 4 HOH A 215 773 773 HOH HOH . 
E 4 HOH A 216 774 774 HOH HOH . 
E 4 HOH A 217 775 775 HOH HOH . 
E 4 HOH A 218 776 776 HOH HOH . 
E 4 HOH A 219 777 777 HOH HOH . 
E 4 HOH A 220 778 778 HOH HOH . 
E 4 HOH A 221 779 779 HOH HOH . 
E 4 HOH A 222 780 780 HOH HOH . 
E 4 HOH A 223 781 781 HOH HOH . 
E 4 HOH A 224 782 782 HOH HOH . 
E 4 HOH A 225 783 783 HOH HOH . 
E 4 HOH A 226 784 784 HOH HOH . 
E 4 HOH A 227 785 785 HOH HOH . 
E 4 HOH A 228 786 786 HOH HOH . 
E 4 HOH A 229 787 787 HOH HOH . 
E 4 HOH A 230 788 788 HOH HOH . 
E 4 HOH A 231 789 789 HOH HOH . 
E 4 HOH A 232 790 790 HOH HOH . 
E 4 HOH A 233 791 791 HOH HOH . 
E 4 HOH A 234 792 792 HOH HOH . 
E 4 HOH A 235 793 793 HOH HOH . 
E 4 HOH A 236 794 794 HOH HOH . 
E 4 HOH A 237 795 555 HOH HOH . 
E 4 HOH A 238 796 796 HOH HOH . 
E 4 HOH A 239 797 797 HOH HOH . 
E 4 HOH A 240 798 798 HOH HOH . 
E 4 HOH A 241 799 799 HOH HOH . 
E 4 HOH A 242 800 800 HOH HOH . 
E 4 HOH A 243 801 801 HOH HOH . 
E 4 HOH A 244 802 802 HOH HOH . 
E 4 HOH A 245 803 803 HOH HOH . 
E 4 HOH A 246 804 804 HOH HOH . 
E 4 HOH A 247 805 805 HOH HOH . 
E 4 HOH A 248 806 806 HOH HOH . 
E 4 HOH A 249 807 556 HOH HOH . 
E 4 HOH A 250 808 808 HOH HOH . 
E 4 HOH A 251 809 809 HOH HOH . 
E 4 HOH A 252 810 810 HOH HOH . 
E 4 HOH A 253 811 811 HOH HOH . 
E 4 HOH A 254 812 812 HOH HOH . 
E 4 HOH A 255 813 557 HOH HOH . 
E 4 HOH A 256 814 558 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -4.999 
_atom_site.Cartn_y               53.436 
_atom_site.Cartn_z               11.565 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        42.7 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           558 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#