data_3NH4 # _model_server_result.job_id 1e9MvT9lqKhS6rhGSafGJA _model_server_result.datetime_utc '2024-11-22 05:32:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":325}' # _entry.id 3NH4 # _exptl.entry_id 3NH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NH4 _cell.length_a 93.661 _cell.length_b 93.661 _cell.length_c 97.128 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -46.8305 81.112805 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 30 A HIS 21 1_555 B ZN ZN . A ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A OE1 GLU 33 A GLU 24 1_555 B ZN ZN . A ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc3 A OE2 GLU 33 A GLU 24 1_555 B ZN ZN . A ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 A O GLN 51 A GLN 42 1_555 D CS CS . A CS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.495 ? metalc ? metalc5 A ND1 HIS 125 A HIS 116 1_555 B ZN ZN . A ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc6 A O ASN 130 A ASN 121 1_555 C CS CS . A CS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.307 ? metalc ? metalc7 A O ASP 259 A ASP 250 1_555 C CS CS . A CS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.236 ? metalc ? metalc8 B ZN ZN . A ZN 319 1_555 G OXT ACT . A ACT 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc9 B ZN ZN . A ZN 319 1_555 G O ACT . A ACT 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 89 n n C O2 FMT sing 90 n n C H FMT sing 91 n n O2 HO2 FMT sing 92 n n # _atom_sites.entry_id 3NH4 _atom_sites.fract_transf_matrix[1][1] 0.010677 _atom_sites.fract_transf_matrix[1][2] 0.006164 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 319 1 ZN ZN . C 3 CS A 1 320 2 CS CS . D 3 CS A 1 321 3 CS CS . E 4 CL A 1 322 4 CL CL . F 4 CL A 1 323 5 CL CL . G 5 ACT A 1 324 6 ACT ACT . H 6 FMT A 1 325 7 FMT FMT . I 7 HOH A 1 326 8 HOH HOH . I 7 HOH A 2 327 9 HOH HOH . I 7 HOH A 3 328 10 HOH HOH . I 7 HOH A 4 329 11 HOH HOH . I 7 HOH A 5 330 12 HOH HOH . I 7 HOH A 6 331 13 HOH HOH . I 7 HOH A 7 332 14 HOH HOH . I 7 HOH A 8 333 15 HOH HOH . I 7 HOH A 9 334 16 HOH HOH . I 7 HOH A 10 335 17 HOH HOH . I 7 HOH A 11 336 18 HOH HOH . I 7 HOH A 12 337 19 HOH HOH . I 7 HOH A 13 338 20 HOH HOH . I 7 HOH A 14 339 21 HOH HOH . I 7 HOH A 15 340 22 HOH HOH . I 7 HOH A 16 341 23 HOH HOH . I 7 HOH A 17 342 24 HOH HOH . I 7 HOH A 18 343 25 HOH HOH . I 7 HOH A 19 344 26 HOH HOH . I 7 HOH A 20 345 27 HOH HOH . I 7 HOH A 21 346 28 HOH HOH . I 7 HOH A 22 347 29 HOH HOH . I 7 HOH A 23 348 30 HOH HOH . I 7 HOH A 24 349 31 HOH HOH . I 7 HOH A 25 350 32 HOH HOH . I 7 HOH A 26 351 33 HOH HOH . I 7 HOH A 27 352 34 HOH HOH . I 7 HOH A 28 353 35 HOH HOH . I 7 HOH A 29 354 36 HOH HOH . I 7 HOH A 30 355 37 HOH HOH . I 7 HOH A 31 356 38 HOH HOH . I 7 HOH A 32 357 39 HOH HOH . I 7 HOH A 33 358 40 HOH HOH . I 7 HOH A 34 359 41 HOH HOH . I 7 HOH A 35 360 42 HOH HOH . I 7 HOH A 36 361 43 HOH HOH . I 7 HOH A 37 362 44 HOH HOH . I 7 HOH A 38 363 45 HOH HOH . I 7 HOH A 39 364 46 HOH HOH . I 7 HOH A 40 365 47 HOH HOH . I 7 HOH A 41 366 48 HOH HOH . I 7 HOH A 42 367 49 HOH HOH . I 7 HOH A 43 368 50 HOH HOH . I 7 HOH A 44 369 51 HOH HOH . I 7 HOH A 45 370 52 HOH HOH . I 7 HOH A 46 371 53 HOH HOH . I 7 HOH A 47 372 54 HOH HOH . I 7 HOH A 48 373 55 HOH HOH . I 7 HOH A 49 374 56 HOH HOH . I 7 HOH A 50 375 58 HOH HOH . I 7 HOH A 51 376 59 HOH HOH . I 7 HOH A 52 377 61 HOH HOH . I 7 HOH A 53 378 62 HOH HOH . I 7 HOH A 54 379 63 HOH HOH . I 7 HOH A 55 380 64 HOH HOH . I 7 HOH A 56 381 65 HOH HOH . I 7 HOH A 57 382 66 HOH HOH . I 7 HOH A 58 383 67 HOH HOH . I 7 HOH A 59 384 68 HOH HOH . I 7 HOH A 60 385 69 HOH HOH . I 7 HOH A 61 386 70 HOH HOH . I 7 HOH A 62 387 71 HOH HOH . I 7 HOH A 63 388 72 HOH HOH . I 7 HOH A 64 389 73 HOH HOH . I 7 HOH A 65 390 74 HOH HOH . I 7 HOH A 66 391 75 HOH HOH . I 7 HOH A 67 392 76 HOH HOH . I 7 HOH A 68 393 77 HOH HOH . I 7 HOH A 69 394 78 HOH HOH . I 7 HOH A 70 395 79 HOH HOH . I 7 HOH A 71 396 80 HOH HOH . I 7 HOH A 72 397 81 HOH HOH . I 7 HOH A 73 398 82 HOH HOH . I 7 HOH A 74 399 83 HOH HOH . I 7 HOH A 75 400 84 HOH HOH . I 7 HOH A 76 401 85 HOH HOH . I 7 HOH A 77 402 86 HOH HOH . I 7 HOH A 78 403 87 HOH HOH . I 7 HOH A 79 404 88 HOH HOH . I 7 HOH A 80 405 89 HOH HOH . I 7 HOH A 81 406 90 HOH HOH . I 7 HOH A 82 407 91 HOH HOH . I 7 HOH A 83 408 93 HOH HOH . I 7 HOH A 84 409 94 HOH HOH . I 7 HOH A 85 410 95 HOH HOH . I 7 HOH A 86 411 96 HOH HOH . I 7 HOH A 87 412 97 HOH HOH . I 7 HOH A 88 413 98 HOH HOH . I 7 HOH A 89 414 99 HOH HOH . I 7 HOH A 90 415 100 HOH HOH . I 7 HOH A 91 416 101 HOH HOH . I 7 HOH A 92 417 102 HOH HOH . I 7 HOH A 93 418 103 HOH HOH . I 7 HOH A 94 419 104 HOH HOH . I 7 HOH A 95 420 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . H 6 -23.735 25.997 -10.916 1 40.07 ? C FMT 325 A 1 HETATM 2 O O1 FMT . . . H 6 -24.843 26.544 -10.868 1 41.22 ? O1 FMT 325 A 1 HETATM 3 O O2 FMT . . . H 6 -23.322 25.388 -11.91 1 36.89 ? O2 FMT 325 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #