data_3NH8 # _model_server_result.job_id UUrjapws6bvXGVAHDo116g _model_server_result.datetime_utc '2025-08-31 17:05:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nh8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":322}' # _entry.id 3NH8 # _exptl.entry_id 3NH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.138 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-acetyl-S-[(1S)-1,2-dichloroethyl]-L-cysteine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NH8 _cell.length_a 93.407 _cell.length_b 93.407 _cell.length_c 97.637 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -46.7035 -80.892835 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 30 A HIS 21 1_555 B ZN ZN . A ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc2 A OE1 GLU 33 A GLU 24 1_555 B ZN ZN . A ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A OE2 GLU 33 A GLU 24 1_555 B ZN ZN . A ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc4 A ND1 HIS 125 A HIS 116 1_555 B ZN ZN . A ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc5 B ZN ZN . A ZN 319 1_555 E O7 DC2 . A DC2 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? # _chem_comp.formula 'C7 H11 Cl2 N O3 S' _chem_comp.formula_weight 260.138 _chem_comp.id DC2 _chem_comp.mon_nstd_flag n _chem_comp.name N-acetyl-S-[(1S)-1,2-dichloroethyl]-L-cysteine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 DC2 doub 83 n n CL1 C11 DC2 sing 84 n n C2 OXT DC2 sing 85 n n C2 C4 DC2 sing 86 n n C12 CL2 DC2 sing 87 n n C4 C9 DC2 sing 88 n n C4 N DC2 sing 89 n n C4 H4 DC2 sing 90 n n C6 N DC2 sing 91 n n N H2 DC2 sing 92 n n O7 C6 DC2 doub 93 n n C6 C8 DC2 sing 94 n n C8 H8 DC2 sing 95 n n C8 H8A DC2 sing 96 n n C8 H8B DC2 sing 97 n n S10 C9 DC2 sing 98 n n C9 H9 DC2 sing 99 n n C9 H9A DC2 sing 100 n n C11 S10 DC2 sing 101 n n C11 C12 DC2 sing 102 n n C11 H11 DC2 sing 103 n n C12 H12 DC2 sing 104 n n C12 H12A DC2 sing 105 n n OXT HOXT DC2 sing 106 n n # _atom_sites.entry_id 3NH8 _atom_sites.fract_transf_matrix[1][1] 0.010706 _atom_sites.fract_transf_matrix[1][2] 0.006181 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 319 1 ZN ZN . C 3 CL A 1 320 2 CL CL . D 3 CL A 1 321 3 CL CL . E 4 DC2 A 1 322 4 DC2 DC2 . F 5 HOH A 1 323 5 HOH HOH . F 5 HOH A 2 324 6 HOH HOH . F 5 HOH A 3 325 7 HOH HOH . F 5 HOH A 4 326 8 HOH HOH . F 5 HOH A 5 327 9 HOH HOH . F 5 HOH A 6 328 10 HOH HOH . F 5 HOH A 7 329 11 HOH HOH . F 5 HOH A 8 330 12 HOH HOH . F 5 HOH A 9 331 13 HOH HOH . F 5 HOH A 10 332 14 HOH HOH . F 5 HOH A 11 333 15 HOH HOH . F 5 HOH A 12 334 16 HOH HOH . F 5 HOH A 13 335 17 HOH HOH . F 5 HOH A 14 336 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 DC2 . . . E 4 -10.303 -33.77 -9.575 1 52.41 ? O1 DC2 322 A 1 HETATM 2 CL CL1 DC2 . . . E 4 -6.424 -30.45 -8.126 1 69.56 ? CL1 DC2 322 A 1 HETATM 3 C C2 DC2 . . . E 4 -10.652 -34.28 -8.476 1 52.94 ? C2 DC2 322 A 1 HETATM 4 CL CL2 DC2 . . . E 4 -6.834 -34.687 -6.994 1 77.43 ? CL2 DC2 322 A 1 HETATM 5 C C4 DC2 . . . E 4 -11.221 -33.356 -7.392 1 45.44 ? C4 DC2 322 A 1 HETATM 6 N N DC2 . . . E 4 -12.06 -34.119 -6.471 1 31.86 ? N DC2 322 A 1 HETATM 7 C C6 DC2 . . . E 4 -12.867 -35.053 -7.219 1 39.19 ? C6 DC2 322 A 1 HETATM 8 O O7 DC2 . . . E 4 -13.572 -34.604 -8.351 1 42.9 ? O7 DC2 322 A 1 HETATM 9 C C8 DC2 . . . E 4 -13.025 -36.478 -6.734 1 45.05 ? C8 DC2 322 A 1 HETATM 10 C C9 DC2 . . . E 4 -10.163 -32.663 -6.508 1 54.79 ? C9 DC2 322 A 1 HETATM 11 S S10 DC2 . . . E 4 -8.933 -31.439 -7.169 1 71.1 ? S10 DC2 322 A 1 HETATM 12 C C11 DC2 . . . E 4 -7.372 -31.998 -8.021 1 67.31 ? C11 DC2 322 A 1 HETATM 13 C C12 DC2 . . . E 4 -6.357 -33.002 -7.392 1 66.71 ? C12 DC2 322 A 1 HETATM 14 O OXT DC2 . . . E 4 -10.586 -35.488 -8.189 1 53.66 ? OXT DC2 322 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 417 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #