data_3NH9 # _model_server_result.job_id Ot2_V1TKZ9Q1FH7Tgw4dDg _model_server_result.datetime_utc '2024-12-07 08:03:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3NH9 # _exptl.entry_id 3NH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NH9 _cell.length_a 57.152 _cell.length_b 65.626 _cell.length_c 69.522 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3NH9 _atom_sites.fract_transf_matrix[1][1] 0.017497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1 1 ATP ATP . C 3 BME A 1 2 2 BME BME . D 3 BME A 1 3 3 BME BME . E 4 HOH A 1 4 4 HOH HOH . E 4 HOH A 2 5 5 HOH HOH . E 4 HOH A 3 6 6 HOH HOH . E 4 HOH A 4 7 7 HOH HOH . E 4 HOH A 5 8 8 HOH HOH . E 4 HOH A 6 9 9 HOH HOH . E 4 HOH A 7 10 10 HOH HOH . E 4 HOH A 8 11 11 HOH HOH . E 4 HOH A 9 12 12 HOH HOH . E 4 HOH A 10 13 13 HOH HOH . E 4 HOH A 11 14 14 HOH HOH . E 4 HOH A 12 15 15 HOH HOH . E 4 HOH A 13 16 16 HOH HOH . E 4 HOH A 14 17 17 HOH HOH . E 4 HOH A 15 18 18 HOH HOH . E 4 HOH A 16 19 19 HOH HOH . E 4 HOH A 17 20 20 HOH HOH . E 4 HOH A 18 21 21 HOH HOH . E 4 HOH A 19 22 22 HOH HOH . E 4 HOH A 20 23 23 HOH HOH . E 4 HOH A 21 24 24 HOH HOH . E 4 HOH A 22 25 25 HOH HOH . E 4 HOH A 23 26 26 HOH HOH . E 4 HOH A 24 27 27 HOH HOH . E 4 HOH A 25 28 28 HOH HOH . E 4 HOH A 26 29 29 HOH HOH . E 4 HOH A 27 30 30 HOH HOH . E 4 HOH A 28 31 31 HOH HOH . E 4 HOH A 29 32 32 HOH HOH . E 4 HOH A 30 33 33 HOH HOH . E 4 HOH A 31 34 34 HOH HOH . E 4 HOH A 32 35 35 HOH HOH . E 4 HOH A 33 36 36 HOH HOH . E 4 HOH A 34 37 37 HOH HOH . E 4 HOH A 35 38 38 HOH HOH . E 4 HOH A 36 39 39 HOH HOH . E 4 HOH A 37 40 40 HOH HOH . E 4 HOH A 38 41 41 HOH HOH . E 4 HOH A 39 42 42 HOH HOH . E 4 HOH A 40 43 43 HOH HOH . E 4 HOH A 41 44 44 HOH HOH . E 4 HOH A 42 45 45 HOH HOH . E 4 HOH A 43 46 46 HOH HOH . E 4 HOH A 44 47 47 HOH HOH . E 4 HOH A 45 48 48 HOH HOH . E 4 HOH A 46 49 49 HOH HOH . E 4 HOH A 47 50 50 HOH HOH . E 4 HOH A 48 51 51 HOH HOH . E 4 HOH A 49 52 52 HOH HOH . E 4 HOH A 50 53 53 HOH HOH . E 4 HOH A 51 54 54 HOH HOH . E 4 HOH A 52 55 55 HOH HOH . E 4 HOH A 53 56 56 HOH HOH . E 4 HOH A 54 57 57 HOH HOH . E 4 HOH A 55 58 58 HOH HOH . E 4 HOH A 56 59 59 HOH HOH . E 4 HOH A 57 60 60 HOH HOH . E 4 HOH A 58 61 61 HOH HOH . E 4 HOH A 59 62 62 HOH HOH . E 4 HOH A 60 63 63 HOH HOH . E 4 HOH A 61 64 64 HOH HOH . E 4 HOH A 62 65 65 HOH HOH . E 4 HOH A 63 66 66 HOH HOH . E 4 HOH A 64 67 67 HOH HOH . E 4 HOH A 65 68 68 HOH HOH . E 4 HOH A 66 69 69 HOH HOH . E 4 HOH A 67 70 70 HOH HOH . E 4 HOH A 68 71 71 HOH HOH . E 4 HOH A 69 72 72 HOH HOH . E 4 HOH A 70 73 73 HOH HOH . E 4 HOH A 71 74 74 HOH HOH . E 4 HOH A 72 75 75 HOH HOH . E 4 HOH A 73 76 76 HOH HOH . E 4 HOH A 74 77 77 HOH HOH . E 4 HOH A 75 78 78 HOH HOH . E 4 HOH A 76 79 79 HOH HOH . E 4 HOH A 77 80 80 HOH HOH . E 4 HOH A 78 81 81 HOH HOH . E 4 HOH A 79 82 82 HOH HOH . E 4 HOH A 80 83 83 HOH HOH . E 4 HOH A 81 84 84 HOH HOH . E 4 HOH A 82 85 85 HOH HOH . E 4 HOH A 83 86 86 HOH HOH . E 4 HOH A 84 87 87 HOH HOH . E 4 HOH A 85 88 88 HOH HOH . E 4 HOH A 86 89 89 HOH HOH . E 4 HOH A 87 90 90 HOH HOH . E 4 HOH A 88 91 91 HOH HOH . E 4 HOH A 89 92 92 HOH HOH . E 4 HOH A 90 93 93 HOH HOH . E 4 HOH A 91 94 94 HOH HOH . E 4 HOH A 92 95 95 HOH HOH . E 4 HOH A 93 96 96 HOH HOH . E 4 HOH A 94 97 97 HOH HOH . E 4 HOH A 95 98 98 HOH HOH . E 4 HOH A 96 99 99 HOH HOH . E 4 HOH A 97 100 100 HOH HOH . E 4 HOH A 98 101 101 HOH HOH . E 4 HOH A 99 102 102 HOH HOH . E 4 HOH A 100 103 103 HOH HOH . E 4 HOH A 101 104 104 HOH HOH . E 4 HOH A 102 105 105 HOH HOH . E 4 HOH A 103 106 106 HOH HOH . E 4 HOH A 104 107 107 HOH HOH . E 4 HOH A 105 108 108 HOH HOH . E 4 HOH A 106 109 109 HOH HOH . E 4 HOH A 107 110 110 HOH HOH . E 4 HOH A 108 111 111 HOH HOH . E 4 HOH A 109 112 112 HOH HOH . E 4 HOH A 110 113 113 HOH HOH . E 4 HOH A 111 114 114 HOH HOH . E 4 HOH A 112 115 115 HOH HOH . E 4 HOH A 113 116 116 HOH HOH . E 4 HOH A 114 117 117 HOH HOH . E 4 HOH A 115 118 118 HOH HOH . E 4 HOH A 116 119 119 HOH HOH . E 4 HOH A 117 120 120 HOH HOH . E 4 HOH A 118 121 121 HOH HOH . E 4 HOH A 119 122 122 HOH HOH . E 4 HOH A 120 123 123 HOH HOH . E 4 HOH A 121 124 124 HOH HOH . E 4 HOH A 122 125 125 HOH HOH . E 4 HOH A 123 126 126 HOH HOH . E 4 HOH A 124 127 127 HOH HOH . E 4 HOH A 125 128 128 HOH HOH . E 4 HOH A 126 129 129 HOH HOH . E 4 HOH A 127 130 130 HOH HOH . E 4 HOH A 128 131 131 HOH HOH . E 4 HOH A 129 132 132 HOH HOH . E 4 HOH A 130 133 133 HOH HOH . E 4 HOH A 131 134 134 HOH HOH . E 4 HOH A 132 135 135 HOH HOH . E 4 HOH A 133 136 136 HOH HOH . E 4 HOH A 134 137 137 HOH HOH . E 4 HOH A 135 138 138 HOH HOH . E 4 HOH A 136 139 139 HOH HOH . E 4 HOH A 137 140 140 HOH HOH . E 4 HOH A 138 141 141 HOH HOH . E 4 HOH A 139 142 142 HOH HOH . E 4 HOH A 140 143 143 HOH HOH . E 4 HOH A 141 144 144 HOH HOH . E 4 HOH A 142 145 145 HOH HOH . E 4 HOH A 143 146 146 HOH HOH . E 4 HOH A 144 147 147 HOH HOH . E 4 HOH A 145 148 148 HOH HOH . E 4 HOH A 146 149 149 HOH HOH . E 4 HOH A 147 150 150 HOH HOH . E 4 HOH A 148 151 151 HOH HOH . E 4 HOH A 149 152 152 HOH HOH . E 4 HOH A 150 153 153 HOH HOH . E 4 HOH A 151 154 154 HOH HOH . E 4 HOH A 152 155 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -18.323 -25.05 6.813 1 25.31 ? PG ATP 1 A 1 HETATM 2 O O1G ATP . . . B 2 -18.528 -24.965 8.276 1 21.66 ? O1G ATP 1 A 1 HETATM 3 O O2G ATP . . . B 2 -18.695 -26.374 6.179 1 28.08 ? O2G ATP 1 A 1 HETATM 4 O O3G ATP . . . B 2 -18.783 -23.811 6.104 1 23.72 ? O3G ATP 1 A 1 HETATM 5 P PB ATP . . . B 2 -15.52 -24.864 7.575 1 17.9 ? PB ATP 1 A 1 HETATM 6 O O1B ATP . . . B 2 -14.308 -25.258 6.81 1 21.89 ? O1B ATP 1 A 1 HETATM 7 O O2B ATP . . . B 2 -15.65 -23.587 8.352 1 17.3 ? O2B ATP 1 A 1 HETATM 8 O O3B ATP . . . B 2 -16.716 -25.096 6.523 1 23.01 ? O3B ATP 1 A 1 HETATM 9 P PA ATP . . . B 2 -15.477 -26.252 10.075 1 20.77 ? PA ATP 1 A 1 HETATM 10 O O1A ATP . . . B 2 -16.464 -25.492 10.9 1 19.56 ? O1A ATP 1 A 1 HETATM 11 O O2A ATP . . . B 2 -14.042 -26.037 10.331 1 19.56 ? O2A ATP 1 A 1 HETATM 12 O O3A ATP . . . B 2 -15.836 -26.097 8.547 1 22.47 ? O3A ATP 1 A 1 HETATM 13 O O5' ATP . . . B 2 -15.758 -27.845 10.221 1 18.4 ? O5' ATP 1 A 1 HETATM 14 C C5' ATP . . . B 2 -14.791 -28.839 9.905 1 18.22 ? C5' ATP 1 A 1 HETATM 15 C C4' ATP . . . B 2 -15.551 -30.176 9.954 1 20.88 ? C4' ATP 1 A 1 HETATM 16 O O4' ATP . . . B 2 -15.711 -30.53 11.319 1 21.66 ? O4' ATP 1 A 1 HETATM 17 C C3' ATP . . . B 2 -16.965 -30.056 9.384 1 22.44 ? C3' ATP 1 A 1 HETATM 18 O O3' ATP . . . B 2 -17.347 -31.204 8.627 1 30.35 ? O3' ATP 1 A 1 HETATM 19 C C2' ATP . . . B 2 -17.871 -29.924 10.576 1 22.99 ? C2' ATP 1 A 1 HETATM 20 O O2' ATP . . . B 2 -19.211 -30.369 10.286 1 23.81 ? O2' ATP 1 A 1 HETATM 21 C C1' ATP . . . B 2 -17.092 -30.721 11.613 1 22.15 ? C1' ATP 1 A 1 HETATM 22 N N9 ATP . . . B 2 -17.263 -30.079 12.902 1 22.87 ? N9 ATP 1 A 1 HETATM 23 C C8 ATP . . . B 2 -17.284 -28.753 13.164 1 20.65 ? C8 ATP 1 A 1 HETATM 24 N N7 ATP . . . B 2 -17.5 -28.571 14.459 1 21.45 ? N7 ATP 1 A 1 HETATM 25 C C5 ATP . . . B 2 -17.613 -29.81 15.025 1 23.07 ? C5 ATP 1 A 1 HETATM 26 C C6 ATP . . . B 2 -17.82 -30.325 16.388 1 25.64 ? C6 ATP 1 A 1 HETATM 27 N N6 ATP . . . B 2 -17.947 -29.409 17.374 1 25.22 ? N6 ATP 1 A 1 HETATM 28 N N1 ATP . . . B 2 -17.85 -31.664 16.58 1 27.86 ? N1 ATP 1 A 1 HETATM 29 C C2 ATP . . . B 2 -17.725 -32.558 15.559 1 26.19 ? C2 ATP 1 A 1 HETATM 30 N N3 ATP . . . B 2 -17.521 -32.153 14.285 1 26.61 ? N3 ATP 1 A 1 HETATM 31 C C4 ATP . . . B 2 -17.45 -30.809 14.003 1 24.48 ? C4 ATP 1 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #