data_3NHA # _model_server_result.job_id gXz2RLvyzoy3vCBQE3spIg _model_server_result.datetime_utc '2024-12-26 11:56:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nha # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4}' # _entry.id 3NHA # _exptl.entry_id 3NHA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NHA _cell.length_a 56.272 _cell.length_b 70.708 _cell.length_c 71.113 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NHA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2B ADP . A ADP 2 1_555 D MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 D MG MG . A MG 3 1_555 G O HOH . A HOH 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 D MG MG . A MG 3 1_555 G O HOH . A HOH 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc4 D MG MG . A MG 3 1_555 G O HOH . A HOH 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 D MG MG . A MG 3 1_555 G O HOH . A HOH 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 114 n n C1 O1 BME sing 115 n n C1 H11 BME sing 116 n n C1 H12 BME sing 117 n n C2 S2 BME sing 118 n n C2 H21 BME sing 119 n n C2 H22 BME sing 120 n n O1 HO1 BME sing 121 n n S2 HS2 BME sing 122 n n # _atom_sites.entry_id 3NHA _atom_sites.fract_transf_matrix[1][1] 0.017771 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1 1 PO4 PO4 . C 3 ADP A 1 2 2 ADP ADP . D 4 MG A 1 3 3 MG MG . E 5 BME A 1 4 4 BME BME . F 5 BME A 1 5 5 BME BME . G 6 HOH A 1 6 6 HOH HOH . G 6 HOH A 2 7 7 HOH HOH . G 6 HOH A 3 8 8 HOH HOH . G 6 HOH A 4 9 9 HOH HOH . G 6 HOH A 5 10 10 HOH HOH . G 6 HOH A 6 11 11 HOH HOH . G 6 HOH A 7 12 12 HOH HOH . G 6 HOH A 8 13 13 HOH HOH . G 6 HOH A 9 14 14 HOH HOH . G 6 HOH A 10 15 15 HOH HOH . G 6 HOH A 11 16 16 HOH HOH . G 6 HOH A 12 17 17 HOH HOH . G 6 HOH A 13 18 18 HOH HOH . G 6 HOH A 14 19 19 HOH HOH . G 6 HOH A 15 20 20 HOH HOH . G 6 HOH A 16 21 21 HOH HOH . G 6 HOH A 17 22 22 HOH HOH . G 6 HOH A 18 23 23 HOH HOH . G 6 HOH A 19 24 24 HOH HOH . G 6 HOH A 20 25 25 HOH HOH . G 6 HOH A 21 26 26 HOH HOH . G 6 HOH A 22 27 27 HOH HOH . G 6 HOH A 23 28 28 HOH HOH . G 6 HOH A 24 29 29 HOH HOH . G 6 HOH A 25 30 30 HOH HOH . G 6 HOH A 26 31 31 HOH HOH . G 6 HOH A 27 32 32 HOH HOH . G 6 HOH A 28 33 33 HOH HOH . G 6 HOH A 29 34 34 HOH HOH . G 6 HOH A 30 35 35 HOH HOH . G 6 HOH A 31 36 36 HOH HOH . G 6 HOH A 32 37 37 HOH HOH . G 6 HOH A 33 38 38 HOH HOH . G 6 HOH A 34 39 39 HOH HOH . G 6 HOH A 35 40 40 HOH HOH . G 6 HOH A 36 41 41 HOH HOH . G 6 HOH A 37 42 42 HOH HOH . G 6 HOH A 38 43 43 HOH HOH . G 6 HOH A 39 44 44 HOH HOH . G 6 HOH A 40 45 45 HOH HOH . G 6 HOH A 41 46 46 HOH HOH . G 6 HOH A 42 47 47 HOH HOH . G 6 HOH A 43 48 48 HOH HOH . G 6 HOH A 44 49 49 HOH HOH . G 6 HOH A 45 50 50 HOH HOH . G 6 HOH A 46 51 51 HOH HOH . G 6 HOH A 47 52 52 HOH HOH . G 6 HOH A 48 53 53 HOH HOH . G 6 HOH A 49 54 54 HOH HOH . G 6 HOH A 50 55 55 HOH HOH . G 6 HOH A 51 56 56 HOH HOH . G 6 HOH A 52 57 57 HOH HOH . G 6 HOH A 53 58 58 HOH HOH . G 6 HOH A 54 59 59 HOH HOH . G 6 HOH A 55 60 60 HOH HOH . G 6 HOH A 56 61 61 HOH HOH . G 6 HOH A 57 62 62 HOH HOH . G 6 HOH A 58 63 63 HOH HOH . G 6 HOH A 59 64 64 HOH HOH . G 6 HOH A 60 65 65 HOH HOH . G 6 HOH A 61 66 66 HOH HOH . G 6 HOH A 62 67 67 HOH HOH . G 6 HOH A 63 68 68 HOH HOH . G 6 HOH A 64 69 69 HOH HOH . G 6 HOH A 65 70 70 HOH HOH . G 6 HOH A 66 71 71 HOH HOH . G 6 HOH A 67 72 72 HOH HOH . G 6 HOH A 68 73 73 HOH HOH . G 6 HOH A 69 74 74 HOH HOH . G 6 HOH A 70 75 75 HOH HOH . G 6 HOH A 71 76 76 HOH HOH . G 6 HOH A 72 77 77 HOH HOH . G 6 HOH A 73 78 78 HOH HOH . G 6 HOH A 74 79 79 HOH HOH . G 6 HOH A 75 80 80 HOH HOH . G 6 HOH A 76 81 81 HOH HOH . G 6 HOH A 77 82 82 HOH HOH . G 6 HOH A 78 83 83 HOH HOH . G 6 HOH A 79 84 84 HOH HOH . G 6 HOH A 80 85 85 HOH HOH . G 6 HOH A 81 86 86 HOH HOH . G 6 HOH A 82 87 87 HOH HOH . G 6 HOH A 83 88 88 HOH HOH . G 6 HOH A 84 89 89 HOH HOH . G 6 HOH A 85 90 90 HOH HOH . G 6 HOH A 86 91 91 HOH HOH . G 6 HOH A 87 92 92 HOH HOH . G 6 HOH A 88 93 93 HOH HOH . G 6 HOH A 89 94 94 HOH HOH . G 6 HOH A 90 95 95 HOH HOH . G 6 HOH A 91 96 96 HOH HOH . G 6 HOH A 92 97 97 HOH HOH . G 6 HOH A 93 98 98 HOH HOH . G 6 HOH A 94 99 99 HOH HOH . G 6 HOH A 95 100 100 HOH HOH . G 6 HOH A 96 101 101 HOH HOH . G 6 HOH A 97 102 102 HOH HOH . G 6 HOH A 98 103 103 HOH HOH . G 6 HOH A 99 104 104 HOH HOH . G 6 HOH A 100 105 105 HOH HOH . G 6 HOH A 101 106 106 HOH HOH . G 6 HOH A 102 107 107 HOH HOH . G 6 HOH A 103 108 108 HOH HOH . G 6 HOH A 104 109 109 HOH HOH . G 6 HOH A 105 110 110 HOH HOH . G 6 HOH A 106 111 111 HOH HOH . G 6 HOH A 107 112 112 HOH HOH . G 6 HOH A 108 113 113 HOH HOH . G 6 HOH A 109 114 114 HOH HOH . G 6 HOH A 110 115 115 HOH HOH . G 6 HOH A 111 116 116 HOH HOH . G 6 HOH A 112 117 117 HOH HOH . G 6 HOH A 113 118 118 HOH HOH . G 6 HOH A 114 119 119 HOH HOH . G 6 HOH A 115 120 120 HOH HOH . G 6 HOH A 116 121 121 HOH HOH . G 6 HOH A 117 122 122 HOH HOH . G 6 HOH A 118 123 123 HOH HOH . G 6 HOH A 119 124 124 HOH HOH . G 6 HOH A 120 125 125 HOH HOH . G 6 HOH A 121 126 126 HOH HOH . G 6 HOH A 122 127 127 HOH HOH . G 6 HOH A 123 128 128 HOH HOH . G 6 HOH A 124 129 129 HOH HOH . G 6 HOH A 125 130 130 HOH HOH . G 6 HOH A 126 131 131 HOH HOH . G 6 HOH A 127 132 132 HOH HOH . G 6 HOH A 128 133 133 HOH HOH . G 6 HOH A 129 134 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . E 5 22.993 -0.601 -9.776 1 60.35 ? C1 BME 4 A 1 HETATM 2 C C2 BME . . . E 5 22.982 -0.788 -8.254 1 58.35 ? C2 BME 4 A 1 HETATM 3 O O1 BME . . . E 5 24.311 -0.365 -10.307 1 61.3 ? O1 BME 4 A 1 HETATM 4 S S2 BME . . . E 5 22.945 -2.541 -7.749 1 59.78 ? S2 BME 4 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 893 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #