data_3NHZ # _model_server_result.job_id fIhYKV8uLZajL8hqhCoArQ _model_server_result.datetime_utc '2025-03-05 18:33:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nhz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":126}' # _entry.id 3NHZ # _exptl.entry_id 3NHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NHZ _cell.length_a 56.6 _cell.length_b 56.6 _cell.length_c 181.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 E MG MG . A MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc2 A OD2 ASP 13 A ASP 13 1_555 E MG MG . A MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc3 A OD2 ASP 56 A ASP 56 1_555 E MG MG . A MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc4 A O MET 58 A MET 58 1_555 E MG MG . A MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc5 E MG MG . A MG 126 1_555 I O HOH . A HOH 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc6 B OD2 ASP 56 B ASP 56 1_555 F MG MG . B MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc7 B O MET 58 B MET 58 1_555 F MG MG . B MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc8 F MG MG . B MG 126 1_555 J O HOH . B HOH 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc9 C OD2 ASP 56 C ASP 56 1_555 G MG MG . C MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc10 C O MET 58 C MET 58 1_555 G MG MG . C MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc11 G MG MG . C MG 126 1_555 K O HOH . C HOH 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc12 D OD1 ASP 13 D ASP 13 1_555 H MG MG . D MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc13 D OD2 ASP 56 D ASP 56 1_555 H MG MG . D MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc14 D O MET 58 D MET 58 1_555 H MG MG . D MG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NHZ _atom_sites.fract_transf_matrix[1][1] 0.017668 _atom_sites.fract_transf_matrix[1][2] 0.010201 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 126 123 MG MG . F 2 MG B 1 126 123 MG MG . G 2 MG C 1 126 123 MG MG . H 2 MG D 1 126 123 MG MG . I 3 HOH A 1 130 130 HOH HOH . I 3 HOH A 2 131 131 HOH HOH . I 3 HOH A 3 132 132 HOH HOH . I 3 HOH A 4 133 133 HOH HOH . I 3 HOH A 5 134 134 HOH HOH . I 3 HOH A 6 135 135 HOH HOH . I 3 HOH A 7 136 136 HOH HOH . I 3 HOH A 8 137 137 HOH HOH . I 3 HOH A 9 138 138 HOH HOH . I 3 HOH A 10 139 139 HOH HOH . I 3 HOH A 11 140 140 HOH HOH . I 3 HOH A 12 141 141 HOH HOH . I 3 HOH A 13 142 142 HOH HOH . I 3 HOH A 14 143 143 HOH HOH . I 3 HOH A 15 144 144 HOH HOH . I 3 HOH A 16 145 145 HOH HOH . I 3 HOH A 17 146 146 HOH HOH . I 3 HOH A 18 147 147 HOH HOH . I 3 HOH A 19 148 148 HOH HOH . I 3 HOH A 20 149 149 HOH HOH . I 3 HOH A 21 150 150 HOH HOH . I 3 HOH A 22 151 151 HOH HOH . I 3 HOH A 23 152 152 HOH HOH . I 3 HOH A 24 153 153 HOH HOH . I 3 HOH A 25 154 154 HOH HOH . I 3 HOH A 26 155 155 HOH HOH . I 3 HOH A 27 156 156 HOH HOH . I 3 HOH A 28 157 157 HOH HOH . I 3 HOH A 29 158 158 HOH HOH . I 3 HOH A 30 159 159 HOH HOH . I 3 HOH A 31 160 160 HOH HOH . I 3 HOH A 32 161 161 HOH HOH . I 3 HOH A 33 162 162 HOH HOH . I 3 HOH A 34 163 163 HOH HOH . I 3 HOH A 35 164 164 HOH HOH . I 3 HOH A 36 165 165 HOH HOH . I 3 HOH A 37 166 166 HOH HOH . I 3 HOH A 38 167 167 HOH HOH . I 3 HOH A 39 168 168 HOH HOH . I 3 HOH A 40 169 169 HOH HOH . I 3 HOH A 41 170 170 HOH HOH . J 3 HOH B 1 130 130 HOH HOH . J 3 HOH B 2 131 131 HOH HOH . J 3 HOH B 3 132 132 HOH HOH . J 3 HOH B 4 133 133 HOH HOH . J 3 HOH B 5 134 134 HOH HOH . J 3 HOH B 6 135 135 HOH HOH . J 3 HOH B 7 136 136 HOH HOH . J 3 HOH B 8 137 137 HOH HOH . J 3 HOH B 9 138 138 HOH HOH . J 3 HOH B 10 139 139 HOH HOH . J 3 HOH B 11 140 140 HOH HOH . J 3 HOH B 12 141 141 HOH HOH . J 3 HOH B 13 142 142 HOH HOH . J 3 HOH B 14 143 143 HOH HOH . J 3 HOH B 15 144 144 HOH HOH . J 3 HOH B 16 145 145 HOH HOH . J 3 HOH B 17 146 146 HOH HOH . J 3 HOH B 18 147 147 HOH HOH . J 3 HOH B 19 148 148 HOH HOH . J 3 HOH B 20 149 149 HOH HOH . J 3 HOH B 21 150 150 HOH HOH . J 3 HOH B 22 151 151 HOH HOH . J 3 HOH B 23 152 152 HOH HOH . J 3 HOH B 24 153 153 HOH HOH . J 3 HOH B 25 154 154 HOH HOH . J 3 HOH B 26 155 155 HOH HOH . J 3 HOH B 27 156 156 HOH HOH . J 3 HOH B 28 157 157 HOH HOH . J 3 HOH B 29 158 158 HOH HOH . J 3 HOH B 30 159 159 HOH HOH . J 3 HOH B 31 160 160 HOH HOH . J 3 HOH B 32 161 161 HOH HOH . J 3 HOH B 33 162 162 HOH HOH . J 3 HOH B 34 163 163 HOH HOH . J 3 HOH B 35 164 164 HOH HOH . J 3 HOH B 36 165 165 HOH HOH . J 3 HOH B 37 166 166 HOH HOH . J 3 HOH B 38 167 167 HOH HOH . J 3 HOH B 39 168 168 HOH HOH . J 3 HOH B 40 169 169 HOH HOH . J 3 HOH B 41 170 170 HOH HOH . J 3 HOH B 42 171 171 HOH HOH . K 3 HOH C 1 130 130 HOH HOH . K 3 HOH C 2 131 131 HOH HOH . K 3 HOH C 3 132 132 HOH HOH . K 3 HOH C 4 133 133 HOH HOH . K 3 HOH C 5 134 134 HOH HOH . K 3 HOH C 6 135 135 HOH HOH . K 3 HOH C 7 136 136 HOH HOH . K 3 HOH C 8 137 137 HOH HOH . K 3 HOH C 9 138 138 HOH HOH . K 3 HOH C 10 139 139 HOH HOH . K 3 HOH C 11 140 140 HOH HOH . K 3 HOH C 12 141 141 HOH HOH . K 3 HOH C 13 142 142 HOH HOH . K 3 HOH C 14 143 143 HOH HOH . K 3 HOH C 15 144 144 HOH HOH . K 3 HOH C 16 145 145 HOH HOH . K 3 HOH C 17 146 146 HOH HOH . K 3 HOH C 18 147 147 HOH HOH . K 3 HOH C 19 148 148 HOH HOH . K 3 HOH C 20 149 149 HOH HOH . K 3 HOH C 21 150 150 HOH HOH . K 3 HOH C 22 151 151 HOH HOH . K 3 HOH C 23 152 152 HOH HOH . K 3 HOH C 24 153 153 HOH HOH . K 3 HOH C 25 154 154 HOH HOH . K 3 HOH C 26 155 155 HOH HOH . K 3 HOH C 27 156 156 HOH HOH . K 3 HOH C 28 157 157 HOH HOH . K 3 HOH C 29 158 158 HOH HOH . K 3 HOH C 30 159 159 HOH HOH . K 3 HOH C 31 160 160 HOH HOH . K 3 HOH C 32 161 161 HOH HOH . K 3 HOH C 33 162 162 HOH HOH . K 3 HOH C 34 163 163 HOH HOH . K 3 HOH C 35 164 164 HOH HOH . K 3 HOH C 36 165 165 HOH HOH . K 3 HOH C 37 166 166 HOH HOH . K 3 HOH C 38 167 167 HOH HOH . K 3 HOH C 39 168 168 HOH HOH . K 3 HOH C 40 169 169 HOH HOH . K 3 HOH C 41 170 170 HOH HOH . L 3 HOH D 1 130 130 HOH HOH . L 3 HOH D 2 131 131 HOH HOH . L 3 HOH D 3 132 132 HOH HOH . L 3 HOH D 4 133 133 HOH HOH . L 3 HOH D 5 134 134 HOH HOH . L 3 HOH D 6 135 135 HOH HOH . L 3 HOH D 7 136 136 HOH HOH . L 3 HOH D 8 137 137 HOH HOH . L 3 HOH D 9 138 138 HOH HOH . L 3 HOH D 10 139 139 HOH HOH . L 3 HOH D 11 140 140 HOH HOH . L 3 HOH D 12 141 141 HOH HOH . L 3 HOH D 13 142 142 HOH HOH . L 3 HOH D 14 143 143 HOH HOH . L 3 HOH D 15 144 144 HOH HOH . L 3 HOH D 16 145 145 HOH HOH . L 3 HOH D 17 146 146 HOH HOH . L 3 HOH D 18 147 147 HOH HOH . L 3 HOH D 19 148 148 HOH HOH . L 3 HOH D 20 149 149 HOH HOH . L 3 HOH D 21 150 150 HOH HOH . L 3 HOH D 22 151 151 HOH HOH . L 3 HOH D 23 152 152 HOH HOH . L 3 HOH D 24 153 153 HOH HOH . L 3 HOH D 25 154 154 HOH HOH . L 3 HOH D 26 155 155 HOH HOH . L 3 HOH D 27 156 156 HOH HOH . L 3 HOH D 28 157 157 HOH HOH . L 3 HOH D 29 158 158 HOH HOH . L 3 HOH D 30 159 159 HOH HOH . L 3 HOH D 31 160 160 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -5.375 _atom_site.Cartn_y -15.049 _atom_site.Cartn_z -15.078 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 126 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #