data_3NI6 # _model_server_result.job_id tq8DC_iTiWBqjY3nsXs5Ew _model_server_result.datetime_utc '2024-10-19 17:19:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ni6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":129}' # _entry.id 3NI6 # _exptl.entry_id 3NI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.4 _cell.angle_gamma 90 _cell.entry_id 3NI6 _cell.length_a 54.917 _cell.length_b 41.857 _cell.length_c 55.339 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 105 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 105 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 105 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.198 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3NI6 _atom_sites.fract_transf_matrix[1][1] 0.018209 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005361 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 127 1 GOL GOL . D 2 GOL A 1 128 1 GOL GOL . E 2 GOL A 1 129 1 GOL GOL . F 2 GOL A 1 130 1 GOL GOL . G 2 GOL B 1 127 1 GOL GOL . H 2 GOL B 1 128 1 GOL GOL . I 2 GOL B 1 129 1 GOL GOL . J 2 GOL B 1 130 1 GOL GOL . K 3 HOH A 1 131 5 HOH HOH . K 3 HOH A 2 132 132 HOH HOH . K 3 HOH A 3 133 133 HOH HOH . K 3 HOH A 4 134 10 HOH HOH . K 3 HOH A 5 135 135 HOH HOH . K 3 HOH A 6 136 12 HOH HOH . K 3 HOH A 7 137 137 HOH HOH . K 3 HOH A 8 138 138 HOH HOH . K 3 HOH A 9 139 14 HOH HOH . K 3 HOH A 10 140 15 HOH HOH . K 3 HOH A 11 141 17 HOH HOH . K 3 HOH A 12 142 142 HOH HOH . K 3 HOH A 13 143 143 HOH HOH . K 3 HOH A 14 144 20 HOH HOH . K 3 HOH A 15 145 23 HOH HOH . K 3 HOH A 16 146 146 HOH HOH . K 3 HOH A 17 147 147 HOH HOH . K 3 HOH A 18 148 148 HOH HOH . K 3 HOH A 19 149 149 HOH HOH . K 3 HOH A 20 150 150 HOH HOH . K 3 HOH A 21 151 25 HOH HOH . K 3 HOH A 22 152 27 HOH HOH . K 3 HOH A 23 153 32 HOH HOH . K 3 HOH A 24 154 34 HOH HOH . K 3 HOH A 25 155 35 HOH HOH . K 3 HOH A 26 156 156 HOH HOH . K 3 HOH A 27 157 37 HOH HOH . K 3 HOH A 28 158 40 HOH HOH . K 3 HOH A 29 159 159 HOH HOH . K 3 HOH A 30 160 160 HOH HOH . K 3 HOH A 31 161 41 HOH HOH . K 3 HOH A 32 162 44 HOH HOH . K 3 HOH A 33 163 47 HOH HOH . K 3 HOH A 34 164 164 HOH HOH . K 3 HOH A 35 165 165 HOH HOH . K 3 HOH A 36 166 48 HOH HOH . K 3 HOH A 37 167 167 HOH HOH . K 3 HOH A 38 168 51 HOH HOH . K 3 HOH A 39 169 52 HOH HOH . K 3 HOH A 40 170 54 HOH HOH . K 3 HOH A 41 171 55 HOH HOH . K 3 HOH A 42 172 60 HOH HOH . K 3 HOH A 43 173 62 HOH HOH . K 3 HOH A 44 174 63 HOH HOH . K 3 HOH A 45 175 64 HOH HOH . K 3 HOH A 46 176 68 HOH HOH . K 3 HOH A 47 177 177 HOH HOH . K 3 HOH A 48 178 69 HOH HOH . K 3 HOH A 49 179 179 HOH HOH . K 3 HOH A 50 180 73 HOH HOH . K 3 HOH A 51 181 75 HOH HOH . K 3 HOH A 52 182 76 HOH HOH . K 3 HOH A 53 183 183 HOH HOH . K 3 HOH A 54 184 77 HOH HOH . K 3 HOH A 55 185 185 HOH HOH . K 3 HOH A 56 186 80 HOH HOH . K 3 HOH A 57 187 81 HOH HOH . K 3 HOH A 58 188 83 HOH HOH . K 3 HOH A 59 189 89 HOH HOH . K 3 HOH A 60 190 90 HOH HOH . K 3 HOH A 61 191 92 HOH HOH . K 3 HOH A 62 192 192 HOH HOH . K 3 HOH A 63 193 96 HOH HOH . K 3 HOH A 64 194 194 HOH HOH . K 3 HOH A 65 195 195 HOH HOH . K 3 HOH A 66 196 97 HOH HOH . K 3 HOH A 67 197 197 HOH HOH . K 3 HOH A 68 198 98 HOH HOH . K 3 HOH A 69 199 199 HOH HOH . K 3 HOH A 70 200 101 HOH HOH . K 3 HOH A 71 201 103 HOH HOH . K 3 HOH A 72 202 104 HOH HOH . K 3 HOH A 73 203 108 HOH HOH . K 3 HOH A 74 204 111 HOH HOH . K 3 HOH A 75 205 117 HOH HOH . K 3 HOH A 76 206 121 HOH HOH . K 3 HOH A 77 207 207 HOH HOH . K 3 HOH A 78 208 123 HOH HOH . K 3 HOH A 79 209 126 HOH HOH . K 3 HOH A 80 210 210 HOH HOH . K 3 HOH A 81 211 130 HOH HOH . K 3 HOH A 82 213 213 HOH HOH . K 3 HOH A 83 215 215 HOH HOH . K 3 HOH A 84 222 222 HOH HOH . K 3 HOH A 85 227 227 HOH HOH . K 3 HOH A 86 231 231 HOH HOH . K 3 HOH A 87 232 232 HOH HOH . K 3 HOH A 88 246 246 HOH HOH . K 3 HOH A 89 256 256 HOH HOH . K 3 HOH A 90 269 269 HOH HOH . K 3 HOH A 91 280 280 HOH HOH . K 3 HOH A 92 281 281 HOH HOH . K 3 HOH A 93 283 283 HOH HOH . K 3 HOH A 94 287 287 HOH HOH . K 3 HOH A 95 294 294 HOH HOH . K 3 HOH A 96 300 300 HOH HOH . K 3 HOH A 97 302 302 HOH HOH . K 3 HOH A 98 303 303 HOH HOH . K 3 HOH A 99 310 310 HOH HOH . K 3 HOH A 100 311 311 HOH HOH . K 3 HOH A 101 328 328 HOH HOH . K 3 HOH A 102 329 329 HOH HOH . K 3 HOH A 103 339 339 HOH HOH . K 3 HOH A 104 343 343 HOH HOH . K 3 HOH A 105 347 347 HOH HOH . K 3 HOH A 106 351 351 HOH HOH . K 3 HOH A 107 358 358 HOH HOH . K 3 HOH A 108 361 361 HOH HOH . K 3 HOH A 109 363 363 HOH HOH . K 3 HOH A 110 364 364 HOH HOH . K 3 HOH A 111 365 365 HOH HOH . K 3 HOH A 112 368 368 HOH HOH . K 3 HOH A 113 371 371 HOH HOH . K 3 HOH A 114 372 372 HOH HOH . K 3 HOH A 115 373 373 HOH HOH . K 3 HOH A 116 374 374 HOH HOH . K 3 HOH A 117 375 375 HOH HOH . K 3 HOH A 118 378 378 HOH HOH . K 3 HOH A 119 380 380 HOH HOH . K 3 HOH A 120 383 383 HOH HOH . K 3 HOH A 121 395 395 HOH HOH . K 3 HOH A 122 397 397 HOH HOH . K 3 HOH A 123 404 404 HOH HOH . K 3 HOH A 124 410 410 HOH HOH . K 3 HOH A 125 411 411 HOH HOH . K 3 HOH A 126 412 412 HOH HOH . K 3 HOH A 127 415 415 HOH HOH . K 3 HOH A 128 416 416 HOH HOH . K 3 HOH A 129 417 417 HOH HOH . K 3 HOH A 130 418 418 HOH HOH . K 3 HOH A 131 419 419 HOH HOH . K 3 HOH A 132 422 422 HOH HOH . K 3 HOH A 133 425 425 HOH HOH . K 3 HOH A 134 432 432 HOH HOH . K 3 HOH A 135 433 433 HOH HOH . K 3 HOH A 136 454 454 HOH HOH . K 3 HOH A 137 455 455 HOH HOH . K 3 HOH A 138 456 456 HOH HOH . K 3 HOH A 139 457 457 HOH HOH . K 3 HOH A 140 458 458 HOH HOH . K 3 HOH A 141 462 462 HOH HOH . K 3 HOH A 142 463 463 HOH HOH . K 3 HOH A 143 465 465 HOH HOH . K 3 HOH A 144 467 467 HOH HOH . K 3 HOH A 145 468 468 HOH HOH . K 3 HOH A 146 469 469 HOH HOH . L 3 HOH B 1 131 1 HOH HOH . L 3 HOH B 2 132 2 HOH HOH . L 3 HOH B 3 133 4 HOH HOH . L 3 HOH B 4 134 134 HOH HOH . L 3 HOH B 5 135 7 HOH HOH . L 3 HOH B 6 136 136 HOH HOH . L 3 HOH B 7 137 8 HOH HOH . L 3 HOH B 8 138 9 HOH HOH . L 3 HOH B 9 139 139 HOH HOH . L 3 HOH B 10 140 11 HOH HOH . L 3 HOH B 11 141 141 HOH HOH . L 3 HOH B 12 142 16 HOH HOH . L 3 HOH B 13 143 19 HOH HOH . L 3 HOH B 14 144 21 HOH HOH . L 3 HOH B 15 145 22 HOH HOH . L 3 HOH B 16 146 24 HOH HOH . L 3 HOH B 17 147 28 HOH HOH . L 3 HOH B 18 148 30 HOH HOH . L 3 HOH B 19 149 31 HOH HOH . L 3 HOH B 20 150 36 HOH HOH . L 3 HOH B 21 151 151 HOH HOH . L 3 HOH B 22 152 38 HOH HOH . L 3 HOH B 23 153 153 HOH HOH . L 3 HOH B 24 154 39 HOH HOH . L 3 HOH B 25 155 45 HOH HOH . L 3 HOH B 26 156 49 HOH HOH . L 3 HOH B 27 157 157 HOH HOH . L 3 HOH B 28 158 50 HOH HOH . L 3 HOH B 29 159 53 HOH HOH . L 3 HOH B 30 160 56 HOH HOH . L 3 HOH B 31 161 57 HOH HOH . L 3 HOH B 32 162 162 HOH HOH . L 3 HOH B 33 163 58 HOH HOH . L 3 HOH B 34 164 59 HOH HOH . L 3 HOH B 35 165 61 HOH HOH . L 3 HOH B 36 166 166 HOH HOH . L 3 HOH B 37 167 66 HOH HOH . L 3 HOH B 38 168 70 HOH HOH . L 3 HOH B 39 169 169 HOH HOH . L 3 HOH B 40 170 72 HOH HOH . L 3 HOH B 41 171 74 HOH HOH . L 3 HOH B 42 172 172 HOH HOH . L 3 HOH B 43 173 173 HOH HOH . L 3 HOH B 44 174 174 HOH HOH . L 3 HOH B 45 175 175 HOH HOH . L 3 HOH B 46 176 176 HOH HOH . L 3 HOH B 47 177 78 HOH HOH . L 3 HOH B 48 178 178 HOH HOH . L 3 HOH B 49 179 82 HOH HOH . L 3 HOH B 50 180 86 HOH HOH . L 3 HOH B 51 181 88 HOH HOH . L 3 HOH B 52 182 91 HOH HOH . L 3 HOH B 53 183 94 HOH HOH . L 3 HOH B 54 184 95 HOH HOH . L 3 HOH B 55 185 99 HOH HOH . L 3 HOH B 56 186 100 HOH HOH . L 3 HOH B 57 187 187 HOH HOH . L 3 HOH B 58 188 110 HOH HOH . L 3 HOH B 59 189 189 HOH HOH . L 3 HOH B 60 190 113 HOH HOH . L 3 HOH B 61 191 114 HOH HOH . L 3 HOH B 62 192 115 HOH HOH . L 3 HOH B 63 193 116 HOH HOH . L 3 HOH B 64 194 118 HOH HOH . L 3 HOH B 65 195 119 HOH HOH . L 3 HOH B 66 196 120 HOH HOH . L 3 HOH B 67 197 124 HOH HOH . L 3 HOH B 68 198 125 HOH HOH . L 3 HOH B 69 199 128 HOH HOH . L 3 HOH B 70 202 202 HOH HOH . L 3 HOH B 71 205 205 HOH HOH . L 3 HOH B 72 206 206 HOH HOH . L 3 HOH B 73 209 209 HOH HOH . L 3 HOH B 74 214 214 HOH HOH . L 3 HOH B 75 221 221 HOH HOH . L 3 HOH B 76 225 225 HOH HOH . L 3 HOH B 77 233 233 HOH HOH . L 3 HOH B 78 236 236 HOH HOH . L 3 HOH B 79 243 243 HOH HOH . L 3 HOH B 80 244 244 HOH HOH . L 3 HOH B 81 253 253 HOH HOH . L 3 HOH B 82 258 258 HOH HOH . L 3 HOH B 83 260 260 HOH HOH . L 3 HOH B 84 267 267 HOH HOH . L 3 HOH B 85 286 286 HOH HOH . L 3 HOH B 86 293 293 HOH HOH . L 3 HOH B 87 297 297 HOH HOH . L 3 HOH B 88 298 298 HOH HOH . L 3 HOH B 89 305 305 HOH HOH . L 3 HOH B 90 307 307 HOH HOH . L 3 HOH B 91 315 315 HOH HOH . L 3 HOH B 92 323 323 HOH HOH . L 3 HOH B 93 326 326 HOH HOH . L 3 HOH B 94 327 327 HOH HOH . L 3 HOH B 95 330 330 HOH HOH . L 3 HOH B 96 337 337 HOH HOH . L 3 HOH B 97 342 342 HOH HOH . L 3 HOH B 98 344 344 HOH HOH . L 3 HOH B 99 349 349 HOH HOH . L 3 HOH B 100 353 353 HOH HOH . L 3 HOH B 101 357 357 HOH HOH . L 3 HOH B 102 359 359 HOH HOH . L 3 HOH B 103 366 366 HOH HOH . L 3 HOH B 104 367 367 HOH HOH . L 3 HOH B 105 369 369 HOH HOH . L 3 HOH B 106 370 370 HOH HOH . L 3 HOH B 107 377 377 HOH HOH . L 3 HOH B 108 379 379 HOH HOH . L 3 HOH B 109 384 384 HOH HOH . L 3 HOH B 110 387 387 HOH HOH . L 3 HOH B 111 389 389 HOH HOH . L 3 HOH B 112 390 390 HOH HOH . L 3 HOH B 113 393 393 HOH HOH . L 3 HOH B 114 396 396 HOH HOH . L 3 HOH B 115 400 400 HOH HOH . L 3 HOH B 116 401 401 HOH HOH . L 3 HOH B 117 405 405 HOH HOH . L 3 HOH B 118 408 408 HOH HOH . L 3 HOH B 119 409 409 HOH HOH . L 3 HOH B 120 413 413 HOH HOH . L 3 HOH B 121 414 414 HOH HOH . L 3 HOH B 122 431 431 HOH HOH . L 3 HOH B 123 435 435 HOH HOH . L 3 HOH B 124 445 445 HOH HOH . L 3 HOH B 125 447 447 HOH HOH . L 3 HOH B 126 452 452 HOH HOH . L 3 HOH B 127 453 453 HOH HOH . L 3 HOH B 128 459 459 HOH HOH . L 3 HOH B 129 461 461 HOH HOH . L 3 HOH B 130 464 464 HOH HOH . L 3 HOH B 131 466 466 HOH HOH . L 3 HOH B 132 470 470 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 2 -7.703 -13.584 -27.324 1 35.02 ? C1 GOL 129 B 1 HETATM 2 O O1 GOL . . . I 2 -7.314 -14.942 -27.302 1 33.91 ? O1 GOL 129 B 1 HETATM 3 C C2 GOL . . . I 2 -6.599 -12.601 -27.719 1 32.28 ? C2 GOL 129 B 1 HETATM 4 O O2 GOL . . . I 2 -7.434 -11.612 -28.302 1 33.49 ? O2 GOL 129 B 1 HETATM 5 C C3 GOL . . . I 2 -5.923 -12 -26.467 1 31.58 ? C3 GOL 129 B 1 HETATM 6 O O3 GOL . . . I 2 -4.486 -12.032 -26.415 1 24.12 ? O3 GOL 129 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #