data_3NIN # _model_server_result.job_id tMROiOGai8z0lxTEUgAJgw _model_server_result.datetime_utc '2024-11-05 06:55:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2}' # _entry.id 3NIN # _exptl.entry_id 3NIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NIN _cell.length_a 45.772 _cell.length_b 45.772 _cell.length_c 87.547 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,K 1 1 B,D,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 163 1_555 B SG CYS 51 B CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 E ZN ZN . A ZN 1 1_555 A SG CYS 11 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 E ZN ZN . A ZN 1 1_555 A SG CYS 36 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 E ZN ZN . A ZN 1 1_555 A SG CYS 39 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc4 E ZN ZN . A ZN 1 1_555 A SG CYS 63 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc5 F ZN ZN . A ZN 2 1_555 A NE2 HIS 6 A HIS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 F ZN ZN . A ZN 2 1_555 A SG CYS 39 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc7 F ZN ZN . A ZN 2 1_555 A SG CYS 65 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc8 F ZN ZN . A ZN 2 1_555 A SG CYS 77 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc9 G ZN ZN . A ZN 3 1_555 A SG CYS 24 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc10 G ZN ZN . A ZN 3 1_555 A SG CYS 27 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc11 G ZN ZN . A ZN 3 1_555 A ND1 HIS 45 A HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc12 G ZN ZN . A ZN 3 1_555 A ND1 HIS 48 A HIS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc13 H ZN ZN . B ZN 1 1_555 B SG CYS 11 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc14 H ZN ZN . B ZN 1 1_555 B SG CYS 36 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc15 H ZN ZN . B ZN 1 1_555 B SG CYS 39 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc16 H ZN ZN . B ZN 1 1_555 B SG CYS 63 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc17 I ZN ZN . B ZN 2 1_555 B NE2 HIS 6 B HIS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc18 I ZN ZN . B ZN 2 1_555 B SG CYS 39 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc19 I ZN ZN . B ZN 2 1_555 B SG CYS 65 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc20 I ZN ZN . B ZN 2 1_555 B SG CYS 77 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc21 J ZN ZN . B ZN 3 1_555 B SG CYS 24 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc22 J ZN ZN . B ZN 3 1_555 B SG CYS 27 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc23 J ZN ZN . B ZN 3 1_555 B ND1 HIS 45 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc24 J ZN ZN . B ZN 3 1_555 B ND1 HIS 48 B HIS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NIN _atom_sites.fract_transf_matrix[1][1] 0.021847 _atom_sites.fract_transf_matrix[1][2] 0.012614 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 1 1 ZN ZN . F 3 ZN A 1 2 2 ZN ZN . G 3 ZN A 1 3 3 ZN ZN . H 3 ZN B 1 1 1 ZN ZN . I 3 ZN B 1 2 2 ZN ZN . J 3 ZN B 1 3 3 ZN ZN . K 4 HOH A 1 4 4 HOH HOH . K 4 HOH A 2 6 6 HOH HOH . K 4 HOH A 3 7 7 HOH HOH . K 4 HOH A 4 8 8 HOH HOH . K 4 HOH A 5 9 9 HOH HOH . K 4 HOH A 6 11 11 HOH HOH . K 4 HOH A 7 15 15 HOH HOH . K 4 HOH A 8 17 17 HOH HOH . K 4 HOH A 9 18 18 HOH HOH . K 4 HOH A 10 20 20 HOH HOH . K 4 HOH A 11 22 22 HOH HOH . K 4 HOH A 12 23 23 HOH HOH . K 4 HOH A 13 26 26 HOH HOH . K 4 HOH A 14 28 28 HOH HOH . K 4 HOH A 15 29 29 HOH HOH . K 4 HOH A 16 30 30 HOH HOH . K 4 HOH A 17 33 33 HOH HOH . K 4 HOH A 18 34 34 HOH HOH . K 4 HOH A 19 35 35 HOH HOH . K 4 HOH A 20 38 38 HOH HOH . K 4 HOH A 21 41 41 HOH HOH . K 4 HOH A 22 195 1 HOH HOH . K 4 HOH A 23 196 2 HOH HOH . L 4 HOH B 1 5 5 HOH HOH . L 4 HOH B 2 10 10 HOH HOH . L 4 HOH B 3 12 12 HOH HOH . L 4 HOH B 4 13 13 HOH HOH . L 4 HOH B 5 14 14 HOH HOH . L 4 HOH B 6 16 16 HOH HOH . L 4 HOH B 7 19 19 HOH HOH . L 4 HOH B 8 21 21 HOH HOH . L 4 HOH B 9 24 24 HOH HOH . L 4 HOH B 10 25 25 HOH HOH . L 4 HOH B 11 27 27 HOH HOH . L 4 HOH B 12 31 31 HOH HOH . L 4 HOH B 13 32 32 HOH HOH . L 4 HOH B 14 36 36 HOH HOH . L 4 HOH B 15 37 37 HOH HOH . L 4 HOH B 16 39 39 HOH HOH . L 4 HOH B 17 40 40 HOH HOH . L 4 HOH B 18 195 3 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 41.137 _atom_site.Cartn_y -26.095 _atom_site.Cartn_z -2.917 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #