data_3NIZ # _model_server_result.job_id PFPIwHqgx25dTjgWs3p3rQ _model_server_result.datetime_utc '2024-10-11 21:55:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3niz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":312}' # _entry.id 3NIZ # _exptl.entry_id 3NIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NIZ _cell.length_a 64.337 _cell.length_b 64.337 _cell.length_c 200.039 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 200.039 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 149 A ASN 149 1_555 B MG MG . A MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 A OD1 ASP 162 A ASP 162 1_555 B MG MG . A MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 B MG MG . A MG 312 1_555 D O1A ADP . A ADP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 B MG MG . A MG 312 1_555 D O1B ADP . A ADP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc5 C MG MG . A MG 313 1_555 D O3B ADP . A ADP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc6 C MG MG . A MG 313 1_555 E O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc7 C MG MG . A MG 313 1_555 E O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NIZ _atom_sites.fract_transf_matrix[1][1] 0.015543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 312 1 MG MG . C 2 MG A 1 313 1 MG MG . D 3 ADP A 1 314 1 ADP ADP . E 4 HOH A 1 315 1 HOH HOH . E 4 HOH A 2 316 2 HOH HOH . E 4 HOH A 3 317 3 HOH HOH . E 4 HOH A 4 318 4 HOH HOH . E 4 HOH A 5 319 5 HOH HOH . E 4 HOH A 6 320 8 HOH HOH . E 4 HOH A 7 321 9 HOH HOH . E 4 HOH A 8 322 10 HOH HOH . E 4 HOH A 9 323 11 HOH HOH . E 4 HOH A 10 324 12 HOH HOH . E 4 HOH A 11 325 13 HOH HOH . E 4 HOH A 12 326 14 HOH HOH . E 4 HOH A 13 327 18 HOH HOH . E 4 HOH A 14 328 19 HOH HOH . E 4 HOH A 15 329 23 HOH HOH . E 4 HOH A 16 330 24 HOH HOH . E 4 HOH A 17 331 25 HOH HOH . E 4 HOH A 18 332 27 HOH HOH . E 4 HOH A 19 333 28 HOH HOH . E 4 HOH A 20 334 29 HOH HOH . E 4 HOH A 21 335 30 HOH HOH . E 4 HOH A 22 336 31 HOH HOH . E 4 HOH A 23 337 33 HOH HOH . E 4 HOH A 24 338 35 HOH HOH . E 4 HOH A 25 339 36 HOH HOH . E 4 HOH A 26 340 39 HOH HOH . E 4 HOH A 27 341 40 HOH HOH . E 4 HOH A 28 342 41 HOH HOH . E 4 HOH A 29 343 42 HOH HOH . E 4 HOH A 30 344 43 HOH HOH . E 4 HOH A 31 345 44 HOH HOH . E 4 HOH A 32 346 47 HOH HOH . E 4 HOH A 33 347 48 HOH HOH . E 4 HOH A 34 348 51 HOH HOH . E 4 HOH A 35 349 58 HOH HOH . E 4 HOH A 36 350 61 HOH HOH . E 4 HOH A 37 351 62 HOH HOH . E 4 HOH A 38 352 66 HOH HOH . E 4 HOH A 39 353 67 HOH HOH . E 4 HOH A 40 354 68 HOH HOH . E 4 HOH A 41 355 75 HOH HOH . E 4 HOH A 42 356 76 HOH HOH . E 4 HOH A 43 357 80 HOH HOH . E 4 HOH A 44 358 87 HOH HOH . E 4 HOH A 45 359 91 HOH HOH . E 4 HOH A 46 360 101 HOH HOH . E 4 HOH A 47 361 127 HOH HOH . E 4 HOH A 48 362 130 HOH HOH . E 4 HOH A 49 363 131 HOH HOH . E 4 HOH A 50 364 132 HOH HOH . E 4 HOH A 51 365 135 HOH HOH . E 4 HOH A 52 366 136 HOH HOH . E 4 HOH A 53 367 138 HOH HOH . E 4 HOH A 54 368 139 HOH HOH . E 4 HOH A 55 369 140 HOH HOH . E 4 HOH A 56 370 142 HOH HOH . E 4 HOH A 57 371 143 HOH HOH . E 4 HOH A 58 372 144 HOH HOH . E 4 HOH A 59 373 145 HOH HOH . E 4 HOH A 60 374 146 HOH HOH . E 4 HOH A 61 375 147 HOH HOH . E 4 HOH A 62 376 148 HOH HOH . E 4 HOH A 63 377 149 HOH HOH . E 4 HOH A 64 378 150 HOH HOH . E 4 HOH A 65 379 151 HOH HOH . E 4 HOH A 66 380 13 HOH HOH . E 4 HOH A 67 381 93 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.23 _atom_site.Cartn_y 13.223 _atom_site.Cartn_z 83.211 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 312 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #