data_3NJ1 # _model_server_result.job_id hciQ4m_wP_IbxMQs4pBpAQ _model_server_result.datetime_utc '2024-12-02 12:21:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3NJ1 # _exptl.entry_id 3NJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.256 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NJ1 _cell.length_a 61.754 _cell.length_b 61.754 _cell.length_c 222.002 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -30.877 53.480533 37.000333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H13 Br N2 O2 S' _chem_comp.formula_weight 377.256 _chem_comp.id PYV _chem_comp.mon_nstd_flag . _chem_comp.name 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Pyrabactin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S N1 PYV sing 327 n n S O1 PYV doub 328 n n S O2 PYV doub 329 n n S C4 PYV sing 330 n n BR C1 PYV sing 331 n n C1 C2 PYV doub 332 n y C1 C6 PYV sing 333 n y N1 C11 PYV sing 334 n n C2 C3 PYV sing 335 n y C2 C10 PYV sing 336 n y N2 C12 PYV doub 337 n y N2 C13 PYV sing 338 n y C3 C4 PYV doub 339 n y C3 C7 PYV sing 340 n y C4 C5 PYV sing 341 n y C5 C6 PYV doub 342 n y C7 C8 PYV doub 343 n y C8 C9 PYV sing 344 n y C9 C10 PYV doub 345 n y C11 C12 PYV sing 346 n n C12 C16 PYV sing 347 n y C13 C14 PYV doub 348 n y C14 C15 PYV sing 349 n y C15 C16 PYV doub 350 n y N1 HN1 PYV sing 351 n n C5 H5 PYV sing 352 n n C6 H6 PYV sing 353 n n C7 H7 PYV sing 354 n n C8 H8 PYV sing 355 n n C9 H9 PYV sing 356 n n C10 H10 PYV sing 357 n n C11 H11 PYV sing 358 n n C11 H11A PYV sing 359 n n C13 H13 PYV sing 360 n n C14 H14 PYV sing 361 n n C15 H15 PYV sing 362 n n C16 H16 PYV sing 363 n n # _atom_sites.entry_id 3NJ1 _atom_sites.fract_transf_matrix[1][1] 0.016193 _atom_sites.fract_transf_matrix[1][2] 0.009349 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PYV A 1 300 300 PYV PYV . C 3 P2M A 1 301 301 P2M P2M . D 4 GOL A 1 191 191 GOL GOL . E 5 HOH A 1 192 192 HOH HOH . E 5 HOH A 2 193 193 HOH HOH . E 5 HOH A 3 194 194 HOH HOH . E 5 HOH A 4 195 195 HOH HOH . E 5 HOH A 5 196 196 HOH HOH . E 5 HOH A 6 197 197 HOH HOH . E 5 HOH A 7 198 198 HOH HOH . E 5 HOH A 8 199 199 HOH HOH . E 5 HOH A 9 200 200 HOH HOH . E 5 HOH A 10 201 201 HOH HOH . E 5 HOH A 11 202 202 HOH HOH . E 5 HOH A 12 203 203 HOH HOH . E 5 HOH A 13 204 204 HOH HOH . E 5 HOH A 14 205 205 HOH HOH . E 5 HOH A 15 206 206 HOH HOH . E 5 HOH A 16 207 207 HOH HOH . E 5 HOH A 17 208 208 HOH HOH . E 5 HOH A 18 209 209 HOH HOH . E 5 HOH A 19 210 210 HOH HOH . E 5 HOH A 20 211 211 HOH HOH . E 5 HOH A 21 212 212 HOH HOH . E 5 HOH A 22 213 213 HOH HOH . E 5 HOH A 23 214 214 HOH HOH . E 5 HOH A 24 215 215 HOH HOH . E 5 HOH A 25 216 216 HOH HOH . E 5 HOH A 26 217 217 HOH HOH . E 5 HOH A 27 218 218 HOH HOH . E 5 HOH A 28 219 219 HOH HOH . E 5 HOH A 29 220 220 HOH HOH . E 5 HOH A 30 221 221 HOH HOH . E 5 HOH A 31 222 222 HOH HOH . E 5 HOH A 32 223 223 HOH HOH . E 5 HOH A 33 224 224 HOH HOH . E 5 HOH A 34 225 225 HOH HOH . E 5 HOH A 35 226 226 HOH HOH . E 5 HOH A 36 227 227 HOH HOH . E 5 HOH A 37 228 228 HOH HOH . E 5 HOH A 38 229 229 HOH HOH . E 5 HOH A 39 230 230 HOH HOH . E 5 HOH A 40 231 231 HOH HOH . E 5 HOH A 41 232 232 HOH HOH . E 5 HOH A 42 233 233 HOH HOH . E 5 HOH A 43 234 234 HOH HOH . E 5 HOH A 44 235 235 HOH HOH . E 5 HOH A 45 236 236 HOH HOH . E 5 HOH A 46 237 237 HOH HOH . E 5 HOH A 47 238 238 HOH HOH . E 5 HOH A 48 239 239 HOH HOH . E 5 HOH A 49 240 240 HOH HOH . E 5 HOH A 50 241 241 HOH HOH . E 5 HOH A 51 242 242 HOH HOH . E 5 HOH A 52 243 243 HOH HOH . E 5 HOH A 53 244 244 HOH HOH . E 5 HOH A 54 245 245 HOH HOH . E 5 HOH A 55 246 246 HOH HOH . E 5 HOH A 56 247 247 HOH HOH . E 5 HOH A 57 248 248 HOH HOH . E 5 HOH A 58 249 249 HOH HOH . E 5 HOH A 59 250 250 HOH HOH . E 5 HOH A 60 251 251 HOH HOH . E 5 HOH A 61 252 252 HOH HOH . E 5 HOH A 62 253 253 HOH HOH . E 5 HOH A 63 254 254 HOH HOH . E 5 HOH A 64 255 255 HOH HOH . E 5 HOH A 65 256 256 HOH HOH . E 5 HOH A 66 257 257 HOH HOH . E 5 HOH A 67 258 258 HOH HOH . E 5 HOH A 68 259 259 HOH HOH . E 5 HOH A 69 260 260 HOH HOH . E 5 HOH A 70 261 261 HOH HOH . E 5 HOH A 71 262 262 HOH HOH . E 5 HOH A 72 263 263 HOH HOH . E 5 HOH A 73 264 264 HOH HOH . E 5 HOH A 74 265 265 HOH HOH . E 5 HOH A 75 266 266 HOH HOH . E 5 HOH A 76 267 267 HOH HOH . E 5 HOH A 77 268 268 HOH HOH . E 5 HOH A 78 269 269 HOH HOH . E 5 HOH A 79 270 270 HOH HOH . E 5 HOH A 80 271 271 HOH HOH . E 5 HOH A 81 272 272 HOH HOH . E 5 HOH A 82 273 273 HOH HOH . E 5 HOH A 83 274 274 HOH HOH . E 5 HOH A 84 275 275 HOH HOH . E 5 HOH A 85 276 276 HOH HOH . E 5 HOH A 86 277 277 HOH HOH . E 5 HOH A 87 278 278 HOH HOH . E 5 HOH A 88 279 279 HOH HOH . E 5 HOH A 89 280 280 HOH HOH . E 5 HOH A 90 281 281 HOH HOH . E 5 HOH A 91 282 282 HOH HOH . E 5 HOH A 92 283 283 HOH HOH . E 5 HOH A 93 284 284 HOH HOH . E 5 HOH A 94 285 285 HOH HOH . E 5 HOH A 95 286 286 HOH HOH . E 5 HOH A 96 287 287 HOH HOH . E 5 HOH A 97 288 288 HOH HOH . E 5 HOH A 98 289 289 HOH HOH . E 5 HOH A 99 290 290 HOH HOH . E 5 HOH A 100 291 291 HOH HOH . E 5 HOH A 101 292 292 HOH HOH . E 5 HOH A 102 293 293 HOH HOH . E 5 HOH A 103 294 294 HOH HOH . E 5 HOH A 104 295 295 HOH HOH . E 5 HOH A 105 296 296 HOH HOH . E 5 HOH A 106 297 297 HOH HOH . E 5 HOH A 107 298 298 HOH HOH . E 5 HOH A 108 299 299 HOH HOH . E 5 HOH A 109 302 302 HOH HOH . E 5 HOH A 110 303 303 HOH HOH . E 5 HOH A 111 304 304 HOH HOH . E 5 HOH A 112 305 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S PYV . A . B 2 6.588 34.476 9.112 0.5 32.15 ? S PYV 300 A 1 HETATM 2 BR BR PYV . A . B 2 5.232 36.2 14.99 0.5 39.28 ? BR PYV 300 A 1 HETATM 3 C C1 PYV . A . B 2 5.634 35.679 13.208 0.5 32.78 ? C1 PYV 300 A 1 HETATM 4 N N1 PYV . A . B 2 7.29 33.038 9.127 0.5 29.99 ? N1 PYV 300 A 1 HETATM 5 O O1 PYV . A . B 2 5.38 34.41 8.338 0.5 29.8 ? O1 PYV 300 A 1 HETATM 6 C C2 PYV . A . B 2 6.956 35.464 12.837 0.5 31.99 ? C2 PYV 300 A 1 HETATM 7 N N2 PYV . A . B 2 6.494 30.587 11.691 0.5 29.62 ? N2 PYV 300 A 1 HETATM 8 O O2 PYV . A . B 2 7.479 35.438 8.526 0.5 31.7 ? O2 PYV 300 A 1 HETATM 9 C C3 PYV . A . B 2 7.259 35.082 11.535 0.5 33 ? C3 PYV 300 A 1 HETATM 10 C C4 PYV . A . B 2 6.24 34.915 10.605 0.5 31.41 ? C4 PYV 300 A 1 HETATM 11 C C5 PYV . A . B 2 4.918 35.129 10.977 0.5 30.92 ? C5 PYV 300 A 1 HETATM 12 C C6 PYV . A . B 2 4.615 35.512 12.278 0.5 31.09 ? C6 PYV 300 A 1 HETATM 13 C C7 PYV . A . B 2 8.581 34.867 11.164 0.5 33.67 ? C7 PYV 300 A 1 HETATM 14 C C8 PYV . A . B 2 9.6 35.034 12.094 0.5 35.9 ? C8 PYV 300 A 1 HETATM 15 C C9 PYV . A . B 2 9.298 35.416 13.396 0.5 37.87 ? C9 PYV 300 A 1 HETATM 16 C C10 PYV . A . B 2 7.975 35.631 13.767 0.5 34.87 ? C10 PYV 300 A 1 HETATM 17 C C11 PYV . A . B 2 6.549 31.875 9.574 0.5 28.93 ? C11 PYV 300 A 1 HETATM 18 C C12 PYV . A . B 2 7.223 31.284 10.791 0.5 30.46 ? C12 PYV 300 A 1 HETATM 19 C C13 PYV . A . B 2 7.065 30.054 12.778 0.5 29.37 ? C13 PYV 300 A 1 HETATM 20 C C14 PYV . A . B 2 8.428 30.204 13.007 0.5 33.94 ? C14 PYV 300 A 1 HETATM 21 C C15 PYV . A . B 2 9.2 30.915 12.099 0.5 36.26 ? C15 PYV 300 A 1 HETATM 22 C C16 PYV . A . B 2 8.589 31.461 10.978 0.5 32.17 ? C16 PYV 300 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 802 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #