data_3NJO
#
_model_server_result.job_id            XygQRa6ctJFs5aibYUf4MQ 
_model_server_result.datetime_utc      '2025-07-16 23:23:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3njo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    3NJO 
#
_exptl.entry_id    3NJO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              377.256 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NJO 
_cell.length_a            60.307 
_cell.length_b            60.307 
_cell.length_c            527.599 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NJO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,K,L 1 1 
C,I,J,M 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 87.933167 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F NA NA . A NA 193 1_555 B OG SER 91 B SER 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc2 F NA NA . A NA 193 1_555 L O HOH . B HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
#
_chem_comp.formula           'C16 H13 Br N2 O2 S' 
_chem_comp.formula_weight    377.256 
_chem_comp.id                PYV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Pyrabactin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S N1 PYV sing 314 n n 
S O1 PYV doub 315 n n 
S O2 PYV doub 316 n n 
S C4 PYV sing 317 n n 
BR C1 PYV sing 318 n n 
C1 C2 PYV doub 319 n y 
C1 C6 PYV sing 320 n y 
N1 C11 PYV sing 321 n n 
C2 C3 PYV sing 322 n y 
C2 C10 PYV sing 323 n y 
N2 C12 PYV doub 324 n y 
N2 C13 PYV sing 325 n y 
C3 C4 PYV doub 326 n y 
C3 C7 PYV sing 327 n y 
C4 C5 PYV sing 328 n y 
C5 C6 PYV doub 329 n y 
C7 C8 PYV doub 330 n y 
C8 C9 PYV sing 331 n y 
C9 C10 PYV doub 332 n y 
C11 C12 PYV sing 333 n n 
C12 C16 PYV sing 334 n y 
C13 C14 PYV doub 335 n y 
C14 C15 PYV sing 336 n y 
C15 C16 PYV doub 337 n y 
N1 HN1 PYV sing 338 n n 
C5 H5 PYV sing 339 n n 
C6 H6 PYV sing 340 n n 
C7 H7 PYV sing 341 n n 
C8 H8 PYV sing 342 n n 
C9 H9 PYV sing 343 n n 
C10 H10 PYV sing 344 n n 
C11 H11 PYV sing 345 n n 
C11 H11A PYV sing 346 n n 
C13 H13 PYV sing 347 n n 
C14 H14 PYV sing 348 n n 
C15 H15 PYV sing 349 n n 
C16 H16 PYV sing 350 n n 
#
_atom_sites.entry_id                     3NJO 
_atom_sites.fract_transf_matrix[1][1]    0.016582 
_atom_sites.fract_transf_matrix[1][2]    0.009574 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019147 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PYV A 1 300 300 PYV PYV . 
E 3 SO4 A 1 192 192 SO4 SO4 . 
F 4 NA A 1 193 193 NA NA . 
G 5 P2M B 1 300 300 P2M P2M . 
H 6 CL B 1 192 192 CL CL . 
I 2 PYV C 1 300 300 PYV PYV . 
J 3 SO4 C 1 192 192 SO4 SO4 . 
K 7 HOH A 1 194 194 HOH HOH . 
K 7 HOH A 2 195 195 HOH HOH . 
K 7 HOH A 3 196 196 HOH HOH . 
K 7 HOH A 4 197 197 HOH HOH . 
K 7 HOH A 5 198 198 HOH HOH . 
K 7 HOH A 6 199 199 HOH HOH . 
K 7 HOH A 7 200 200 HOH HOH . 
K 7 HOH A 8 201 201 HOH HOH . 
K 7 HOH A 9 202 202 HOH HOH . 
K 7 HOH A 10 203 203 HOH HOH . 
K 7 HOH A 11 204 204 HOH HOH . 
K 7 HOH A 12 205 205 HOH HOH . 
K 7 HOH A 13 206 206 HOH HOH . 
K 7 HOH A 14 207 207 HOH HOH . 
K 7 HOH A 15 208 208 HOH HOH . 
K 7 HOH A 16 209 209 HOH HOH . 
K 7 HOH A 17 210 210 HOH HOH . 
K 7 HOH A 18 211 211 HOH HOH . 
K 7 HOH A 19 212 212 HOH HOH . 
K 7 HOH A 20 213 213 HOH HOH . 
K 7 HOH A 21 214 214 HOH HOH . 
K 7 HOH A 22 215 215 HOH HOH . 
K 7 HOH A 23 216 216 HOH HOH . 
K 7 HOH A 24 217 217 HOH HOH . 
K 7 HOH A 25 218 218 HOH HOH . 
L 7 HOH B 1 193 193 HOH HOH . 
L 7 HOH B 2 194 194 HOH HOH . 
L 7 HOH B 3 195 195 HOH HOH . 
L 7 HOH B 4 196 196 HOH HOH . 
L 7 HOH B 5 197 197 HOH HOH . 
L 7 HOH B 6 198 198 HOH HOH . 
L 7 HOH B 7 199 199 HOH HOH . 
L 7 HOH B 8 200 200 HOH HOH . 
L 7 HOH B 9 201 201 HOH HOH . 
L 7 HOH B 10 202 202 HOH HOH . 
L 7 HOH B 11 203 203 HOH HOH . 
L 7 HOH B 12 204 204 HOH HOH . 
M 7 HOH C 1 193 193 HOH HOH . 
M 7 HOH C 2 194 194 HOH HOH . 
M 7 HOH C 3 195 195 HOH HOH . 
M 7 HOH C 4 196 196 HOH HOH . 
M 7 HOH C 5 197 197 HOH HOH . 
M 7 HOH C 6 198 198 HOH HOH . 
M 7 HOH C 7 199 199 HOH HOH . 
M 7 HOH C 8 200 200 HOH HOH . 
M 7 HOH C 9 201 201 HOH HOH . 
M 7 HOH C 10 202 202 HOH HOH . 
M 7 HOH C 11 203 203 HOH HOH . 
M 7 HOH C 12 204 204 HOH HOH . 
M 7 HOH C 13 205 205 HOH HOH . 
M 7 HOH C 14 206 206 HOH HOH . 
M 7 HOH C 15 207 207 HOH HOH . 
M 7 HOH C 16 208 208 HOH HOH . 
M 7 HOH C 17 209 209 HOH HOH . 
M 7 HOH C 18 210 210 HOH HOH . 
M 7 HOH C 19 211 211 HOH HOH . 
M 7 HOH C 20 212 212 HOH HOH . 
M 7 HOH C 21 213 213 HOH HOH . 
M 7 HOH C 22 214 214 HOH HOH . 
M 7 HOH C 23 215 215 HOH HOH . 
M 7 HOH C 24 216 216 HOH HOH . 
M 7 HOH C 25 217 217 HOH HOH . 
M 7 HOH C 26 218 218 HOH HOH . 
M 7 HOH C 27 219 219 HOH HOH . 
M 7 HOH C 28 220 220 HOH HOH . 
M 7 HOH C 29 221 221 HOH HOH . 
M 7 HOH C 30 222 222 HOH HOH . 
M 7 HOH C 31 223 223 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S PYV . A . D 2 10.235 -5.895 11.079 0.25 55.97 ? S PYV 300 A 1 
HETATM 2 S S PYV . B . D 2 10.235 -5.895 11.079 0.25 55.96 ? S PYV 300 A 1 
HETATM 3 BR BR PYV . A . D 2 5.005 -3.772 13.081 0.25 73.06 ? BR PYV 300 A 1 
HETATM 4 C C1 PYV . . . D 2 6.538 -4.551 12.393 0.5 55.49 ? C1 PYV 300 A 1 
HETATM 5 N N1 PYV . . . D 2 10.96 -6.519 12.314 0.5 29.13 ? N1 PYV 300 A 1 
HETATM 6 O O1 PYV . A . D 2 10.09 -6.878 10.106 0.25 57.63 ? O1 PYV 300 A 1 
HETATM 7 O O1 PYV . B . D 2 10.09 -6.878 10.106 0.25 57.63 ? O1 PYV 300 A 1 
HETATM 8 C C2 PYV . . . D 2 7.665 -3.84 12.674 0.5 55.02 ? C2 PYV 300 A 1 
HETATM 9 N N2 PYV . . . D 2 10.046 -6.435 14.677 0.5 31.3 ? N2 PYV 300 A 1 
HETATM 10 O O2 PYV . A . D 2 10.836 -4.727 10.632 0.25 54.49 ? O2 PYV 300 A 1 
HETATM 11 O O2 PYV . B . D 2 10.836 -4.728 10.632 0.25 54.49 ? O2 PYV 300 A 1 
HETATM 12 C C3 PYV . . . D 2 8.839 -4.307 12.22 0.5 55.9 ? C3 PYV 300 A 1 
HETATM 13 C C4 PYV . A . D 2 8.841 -5.471 11.51 0.25 56.2 ? C4 PYV 300 A 1 
HETATM 14 C C4 PYV . B . D 2 8.841 -5.471 11.511 0.25 56.21 ? C4 PYV 300 A 1 
HETATM 15 C C5 PYV . . . D 2 7.715 -6.239 11.217 0.5 56.61 ? C5 PYV 300 A 1 
HETATM 16 C C6 PYV . . . D 2 6.508 -5.75 11.679 0.5 55.9 ? C6 PYV 300 A 1 
HETATM 17 C C7 PYV . A . D 2 10.009 -3.633 12.476 0.25 56.13 ? C7 PYV 300 A 1 
HETATM 18 C C7 PYV . B . D 2 10.01 -3.633 12.476 0.25 56.12 ? C7 PYV 300 A 1 
HETATM 19 C C8 PYV . . . D 2 9.979 -2.457 13.208 0.5 55.53 ? C8 PYV 300 A 1 
HETATM 20 C C9 PYV . . . D 2 8.763 -1.982 13.666 0.5 55.75 ? C9 PYV 300 A 1 
HETATM 21 C C10 PYV . A . D 2 7.598 -2.672 13.391 0.25 54.46 ? C10 PYV 300 A 1 
HETATM 22 C C10 PYV . B . D 2 7.599 -2.672 13.391 0.25 54.46 ? C10 PYV 300 A 1 
HETATM 23 C C11 PYV . . . D 2 10.548 -7.823 12.75 0.5 30.74 ? C11 PYV 300 A 1 
HETATM 24 C C12 PYV . A . D 2 9.873 -7.615 14.069 0.25 31.5 ? C12 PYV 300 A 1 
HETATM 25 C C12 PYV . B . D 2 9.873 -7.615 14.069 0.25 31.5 ? C12 PYV 300 A 1 
HETATM 26 C C13 PYV . A . D 2 9.458 -6.186 15.832 0.25 30.8 ? C13 PYV 300 A 1 
HETATM 27 C C13 PYV . B . D 2 9.459 -6.186 15.832 0.25 30.8 ? C13 PYV 300 A 1 
HETATM 28 C C14 PYV . . . D 2 8.673 -7.151 16.427 0.5 29.76 ? C14 PYV 300 A 1 
HETATM 29 C C15 PYV . . . D 2 8.479 -8.36 15.821 0.5 29.32 ? C15 PYV 300 A 1 
HETATM 30 C C16 PYV . A . D 2 9.087 -8.597 14.615 0.25 28.82 ? C16 PYV 300 A 1 
HETATM 31 C C16 PYV . B . D 2 9.087 -8.597 14.615 0.25 28.82 ? C16 PYV 300 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           459 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#