data_3NJS # _model_server_result.job_id HaX0mElrmuav5i7d50R8Wg _model_server_result.datetime_utc '2024-10-19 17:24:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3njs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3968}' # _entry.id 3NJS # _exptl.entry_id 3NJS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NJS _cell.length_a 130.44 _cell.length_b 130.44 _cell.length_c 38.473 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NJS _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 GAL BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG G 5 NAG 2 n B NAG 2 B 2 NAG G 6 NAG 3 n C BGC 1 C 1 BGC B 1 LCT 3 n C GAL 2 C 2 GAL B 1 LCT # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 227 A ASN 227 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale3 C O4 BGC . C BGC 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 164 n n C1 C2 GOL sing 165 n n C1 H11 GOL sing 166 n n C1 H12 GOL sing 167 n n O1 HO1 GOL sing 168 n n C2 O2 GOL sing 169 n n C2 C3 GOL sing 170 n n C2 H2 GOL sing 171 n n O2 HO2 GOL sing 172 n n C3 O3 GOL sing 173 n n C3 H31 GOL sing 174 n n C3 H32 GOL sing 175 n n O3 HO3 GOL sing 176 n n # _atom_sites.entry_id 3NJS _atom_sites.fract_transf_matrix[1][1] 0.007666 _atom_sites.fract_transf_matrix[1][2] 0.004426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 3968 3968 GOL GOL . E 5 HOH A 1 250 250 HOH HOH . E 5 HOH A 2 251 251 HOH HOH . E 5 HOH A 3 252 1 HOH HOH . E 5 HOH A 4 253 253 HOH HOH . E 5 HOH A 5 254 254 HOH HOH . E 5 HOH A 6 255 2 HOH HOH . E 5 HOH A 7 256 3 HOH HOH . E 5 HOH A 8 257 257 HOH HOH . E 5 HOH A 9 258 258 HOH HOH . E 5 HOH A 10 259 259 HOH HOH . E 5 HOH A 11 260 4 HOH HOH . E 5 HOH A 12 261 261 HOH HOH . E 5 HOH A 13 262 262 HOH HOH . E 5 HOH A 14 263 263 HOH HOH . E 5 HOH A 15 264 264 HOH HOH . E 5 HOH A 16 265 265 HOH HOH . E 5 HOH A 17 266 266 HOH HOH . E 5 HOH A 18 267 267 HOH HOH . E 5 HOH A 19 268 268 HOH HOH . E 5 HOH A 20 269 269 HOH HOH . E 5 HOH A 21 270 6 HOH HOH . E 5 HOH A 22 271 271 HOH HOH . E 5 HOH A 23 272 7 HOH HOH . E 5 HOH A 24 273 273 HOH HOH . E 5 HOH A 25 274 274 HOH HOH . E 5 HOH A 26 275 8 HOH HOH . E 5 HOH A 27 276 9 HOH HOH . E 5 HOH A 28 277 277 HOH HOH . E 5 HOH A 29 278 278 HOH HOH . E 5 HOH A 30 279 279 HOH HOH . E 5 HOH A 31 280 10 HOH HOH . E 5 HOH A 32 281 11 HOH HOH . E 5 HOH A 33 282 12 HOH HOH . E 5 HOH A 34 283 13 HOH HOH . E 5 HOH A 35 284 284 HOH HOH . E 5 HOH A 36 285 14 HOH HOH . E 5 HOH A 37 286 286 HOH HOH . E 5 HOH A 38 287 287 HOH HOH . E 5 HOH A 39 288 15 HOH HOH . E 5 HOH A 40 289 16 HOH HOH . E 5 HOH A 41 290 17 HOH HOH . E 5 HOH A 42 291 18 HOH HOH . E 5 HOH A 43 292 20 HOH HOH . E 5 HOH A 44 293 22 HOH HOH . E 5 HOH A 45 294 23 HOH HOH . E 5 HOH A 46 295 24 HOH HOH . E 5 HOH A 47 296 26 HOH HOH . E 5 HOH A 48 297 27 HOH HOH . E 5 HOH A 49 298 29 HOH HOH . E 5 HOH A 50 299 30 HOH HOH . E 5 HOH A 51 300 31 HOH HOH . E 5 HOH A 52 301 33 HOH HOH . E 5 HOH A 53 302 34 HOH HOH . E 5 HOH A 54 303 36 HOH HOH . E 5 HOH A 55 304 37 HOH HOH . E 5 HOH A 56 305 38 HOH HOH . E 5 HOH A 57 306 39 HOH HOH . E 5 HOH A 58 307 40 HOH HOH . E 5 HOH A 59 308 41 HOH HOH . E 5 HOH A 60 309 43 HOH HOH . E 5 HOH A 61 310 44 HOH HOH . E 5 HOH A 62 311 45 HOH HOH . E 5 HOH A 63 312 46 HOH HOH . E 5 HOH A 64 313 47 HOH HOH . E 5 HOH A 65 314 48 HOH HOH . E 5 HOH A 66 315 50 HOH HOH . E 5 HOH A 67 316 51 HOH HOH . E 5 HOH A 68 317 52 HOH HOH . E 5 HOH A 69 318 54 HOH HOH . E 5 HOH A 70 319 55 HOH HOH . E 5 HOH A 71 320 56 HOH HOH . E 5 HOH A 72 321 57 HOH HOH . E 5 HOH A 73 322 58 HOH HOH . E 5 HOH A 74 323 59 HOH HOH . E 5 HOH A 75 324 61 HOH HOH . E 5 HOH A 76 325 62 HOH HOH . E 5 HOH A 77 326 64 HOH HOH . E 5 HOH A 78 327 65 HOH HOH . E 5 HOH A 79 328 66 HOH HOH . E 5 HOH A 80 329 67 HOH HOH . E 5 HOH A 81 330 68 HOH HOH . E 5 HOH A 82 331 69 HOH HOH . E 5 HOH A 83 332 71 HOH HOH . E 5 HOH A 84 333 73 HOH HOH . E 5 HOH A 85 334 74 HOH HOH . E 5 HOH A 86 335 75 HOH HOH . E 5 HOH A 87 336 76 HOH HOH . E 5 HOH A 88 337 78 HOH HOH . E 5 HOH A 89 338 79 HOH HOH . E 5 HOH A 90 339 81 HOH HOH . E 5 HOH A 91 340 83 HOH HOH . E 5 HOH A 92 341 84 HOH HOH . E 5 HOH A 93 342 85 HOH HOH . E 5 HOH A 94 343 86 HOH HOH . E 5 HOH A 95 344 87 HOH HOH . E 5 HOH A 96 345 88 HOH HOH . E 5 HOH A 97 346 92 HOH HOH . E 5 HOH A 98 347 93 HOH HOH . E 5 HOH A 99 348 94 HOH HOH . E 5 HOH A 100 349 95 HOH HOH . E 5 HOH A 101 350 96 HOH HOH . E 5 HOH A 102 351 97 HOH HOH . E 5 HOH A 103 352 98 HOH HOH . E 5 HOH A 104 353 100 HOH HOH . E 5 HOH A 105 354 102 HOH HOH . E 5 HOH A 106 355 103 HOH HOH . E 5 HOH A 107 356 105 HOH HOH . E 5 HOH A 108 357 108 HOH HOH . E 5 HOH A 109 358 112 HOH HOH . E 5 HOH A 110 359 113 HOH HOH . E 5 HOH A 111 360 116 HOH HOH . E 5 HOH A 112 361 121 HOH HOH . E 5 HOH A 113 362 122 HOH HOH . E 5 HOH A 114 363 126 HOH HOH . E 5 HOH A 115 364 127 HOH HOH . E 5 HOH A 116 365 134 HOH HOH . E 5 HOH A 117 366 135 HOH HOH . E 5 HOH A 118 367 140 HOH HOH . E 5 HOH A 119 368 144 HOH HOH . E 5 HOH A 120 369 145 HOH HOH . E 5 HOH A 121 370 148 HOH HOH . E 5 HOH A 122 371 149 HOH HOH . E 5 HOH A 123 372 157 HOH HOH . E 5 HOH A 124 373 158 HOH HOH . E 5 HOH A 125 374 160 HOH HOH . E 5 HOH A 126 375 161 HOH HOH . E 5 HOH A 127 376 162 HOH HOH . E 5 HOH A 128 377 163 HOH HOH . E 5 HOH A 129 378 164 HOH HOH . E 5 HOH A 130 379 165 HOH HOH . E 5 HOH A 131 380 166 HOH HOH . E 5 HOH A 132 381 176 HOH HOH . E 5 HOH A 133 382 179 HOH HOH . E 5 HOH A 134 383 180 HOH HOH . E 5 HOH A 135 384 183 HOH HOH . E 5 HOH A 136 385 186 HOH HOH . E 5 HOH A 137 386 192 HOH HOH . E 5 HOH A 138 387 193 HOH HOH . E 5 HOH A 139 388 195 HOH HOH . E 5 HOH A 140 389 197 HOH HOH . E 5 HOH A 141 390 204 HOH HOH . E 5 HOH A 142 391 209 HOH HOH . E 5 HOH A 143 392 211 HOH HOH . E 5 HOH A 144 393 212 HOH HOH . E 5 HOH A 145 394 218 HOH HOH . E 5 HOH A 146 395 220 HOH HOH . E 5 HOH A 147 396 221 HOH HOH . E 5 HOH A 148 397 223 HOH HOH . E 5 HOH A 149 398 228 HOH HOH . E 5 HOH A 150 399 229 HOH HOH . E 5 HOH A 151 400 236 HOH HOH . E 5 HOH A 152 401 243 HOH HOH . E 5 HOH A 153 402 244 HOH HOH . E 5 HOH A 154 403 245 HOH HOH . E 5 HOH A 155 404 246 HOH HOH . E 5 HOH A 156 405 247 HOH HOH . E 5 HOH A 157 406 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 11.813 14.518 -8.128 1 23.41 ? C1 GOL 3968 A 1 HETATM 2 O O1 GOL . . . D 4 11.078 13.314 -8.098 1 25.45 ? O1 GOL 3968 A 1 HETATM 3 C C2 GOL . . . D 4 11.736 15.124 -9.525 1 25.29 ? C2 GOL 3968 A 1 HETATM 4 O O2 GOL . . . D 4 10.882 14.343 -10.33 1 22.48 ? O2 GOL 3968 A 1 HETATM 5 C C3 GOL . . . D 4 13.129 15.157 -10.142 1 25.95 ? C3 GOL 3968 A 1 HETATM 6 O O3 GOL . . . D 4 13.042 15.618 -11.472 1 19.05 ? O3 GOL 3968 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #