data_3NK2 # _model_server_result.job_id sf2V2B2a3A0RRFd6fob7xA _model_server_result.datetime_utc '2024-11-07 16:50:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":433}' # _entry.id 3NK2 # _exptl.entry_id 3NK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 153.178 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-DOPAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NK2 _cell.length_a 164.162 _cell.length_b 164.162 _cell.length_c 164.162 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 164.162 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H11 N O2' _chem_comp.formula_weight 153.178 _chem_comp.id LDP _chem_comp.mon_nstd_flag . _chem_comp.name L-DOPAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C1 LDP sing 377 n n C7 C8 LDP sing 378 n n C7 H71 LDP sing 379 n n C7 H72 LDP sing 380 n n C1 C2 LDP doub 381 n y C1 C6 LDP sing 382 n y C4 C5 LDP sing 383 n y C4 C3 LDP doub 384 n y C4 O2 LDP sing 385 n n C2 C3 LDP sing 386 n y C2 H2 LDP sing 387 n n C6 C5 LDP doub 388 n y C6 H6 LDP sing 389 n n C5 H5 LDP sing 390 n n C3 O1 LDP sing 391 n n O1 HO1 LDP sing 392 n n O2 HO2 LDP sing 393 n n C8 N1 LDP sing 394 n n C8 H81 LDP sing 395 n n C8 H82 LDP sing 396 n n N1 HN11 LDP sing 397 n n N1 HN12 LDP sing 398 n n # _atom_sites.entry_id 3NK2 _atom_sites.fract_transf_matrix[1][1] 0.006092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LDP X 1 433 433 LDP LDP . C 3 FAD X 1 434 434 FAD FAD . D 4 GP7 X 1 435 435 GP7 GP7 . E 5 HOH X 1 438 438 HOH HOH . E 5 HOH X 2 440 440 HOH HOH . E 5 HOH X 3 442 442 HOH HOH . E 5 HOH X 4 443 443 HOH HOH . E 5 HOH X 5 445 445 HOH HOH . E 5 HOH X 6 446 446 HOH HOH . E 5 HOH X 7 447 447 HOH HOH . E 5 HOH X 8 448 448 HOH HOH . E 5 HOH X 9 449 449 HOH HOH . E 5 HOH X 10 450 450 HOH HOH . E 5 HOH X 11 451 451 HOH HOH . E 5 HOH X 12 453 453 HOH HOH . E 5 HOH X 13 455 455 HOH HOH . E 5 HOH X 14 458 458 HOH HOH . E 5 HOH X 15 459 459 HOH HOH . E 5 HOH X 16 460 460 HOH HOH . E 5 HOH X 17 462 462 HOH HOH . E 5 HOH X 18 463 463 HOH HOH . E 5 HOH X 19 465 465 HOH HOH . E 5 HOH X 20 466 466 HOH HOH . E 5 HOH X 21 467 467 HOH HOH . E 5 HOH X 22 468 468 HOH HOH . E 5 HOH X 23 469 469 HOH HOH . E 5 HOH X 24 470 470 HOH HOH . E 5 HOH X 25 471 471 HOH HOH . E 5 HOH X 26 472 472 HOH HOH . E 5 HOH X 27 474 474 HOH HOH . E 5 HOH X 28 475 475 HOH HOH . E 5 HOH X 29 476 476 HOH HOH . E 5 HOH X 30 480 480 HOH HOH . E 5 HOH X 31 481 481 HOH HOH . E 5 HOH X 32 482 482 HOH HOH . E 5 HOH X 33 483 483 HOH HOH . E 5 HOH X 34 484 484 HOH HOH . E 5 HOH X 35 486 486 HOH HOH . E 5 HOH X 36 487 487 HOH HOH . E 5 HOH X 37 489 489 HOH HOH . E 5 HOH X 38 490 490 HOH HOH . E 5 HOH X 39 491 491 HOH HOH . E 5 HOH X 40 492 492 HOH HOH . E 5 HOH X 41 493 493 HOH HOH . E 5 HOH X 42 494 494 HOH HOH . E 5 HOH X 43 495 495 HOH HOH . E 5 HOH X 44 496 496 HOH HOH . E 5 HOH X 45 497 497 HOH HOH . E 5 HOH X 46 499 499 HOH HOH . E 5 HOH X 47 503 503 HOH HOH . E 5 HOH X 48 504 504 HOH HOH . E 5 HOH X 49 505 505 HOH HOH . E 5 HOH X 50 506 506 HOH HOH . E 5 HOH X 51 507 507 HOH HOH . E 5 HOH X 52 509 509 HOH HOH . E 5 HOH X 53 510 510 HOH HOH . E 5 HOH X 54 511 511 HOH HOH . E 5 HOH X 55 513 513 HOH HOH . E 5 HOH X 56 515 515 HOH HOH . E 5 HOH X 57 516 516 HOH HOH . E 5 HOH X 58 517 517 HOH HOH . E 5 HOH X 59 519 519 HOH HOH . E 5 HOH X 60 521 521 HOH HOH . E 5 HOH X 61 522 522 HOH HOH . E 5 HOH X 62 524 524 HOH HOH . E 5 HOH X 63 525 525 HOH HOH . E 5 HOH X 64 526 526 HOH HOH . E 5 HOH X 65 527 527 HOH HOH . E 5 HOH X 66 530 530 HOH HOH . E 5 HOH X 67 531 531 HOH HOH . E 5 HOH X 68 532 532 HOH HOH . E 5 HOH X 69 536 536 HOH HOH . E 5 HOH X 70 537 537 HOH HOH . E 5 HOH X 71 538 538 HOH HOH . E 5 HOH X 72 539 539 HOH HOH . E 5 HOH X 73 540 540 HOH HOH . E 5 HOH X 74 544 544 HOH HOH . E 5 HOH X 75 545 545 HOH HOH . E 5 HOH X 76 546 546 HOH HOH . E 5 HOH X 77 547 547 HOH HOH . E 5 HOH X 78 548 548 HOH HOH . E 5 HOH X 79 549 549 HOH HOH . E 5 HOH X 80 550 550 HOH HOH . E 5 HOH X 81 552 552 HOH HOH . E 5 HOH X 82 553 553 HOH HOH . E 5 HOH X 83 554 554 HOH HOH . E 5 HOH X 84 556 556 HOH HOH . E 5 HOH X 85 558 558 HOH HOH . E 5 HOH X 86 559 559 HOH HOH . E 5 HOH X 87 560 560 HOH HOH . E 5 HOH X 88 561 561 HOH HOH . E 5 HOH X 89 562 562 HOH HOH . E 5 HOH X 90 564 564 HOH HOH . E 5 HOH X 91 565 565 HOH HOH . E 5 HOH X 92 568 568 HOH HOH . E 5 HOH X 93 569 569 HOH HOH . E 5 HOH X 94 570 570 HOH HOH . E 5 HOH X 95 571 571 HOH HOH . E 5 HOH X 96 574 574 HOH HOH . E 5 HOH X 97 577 577 HOH HOH . E 5 HOH X 98 578 578 HOH HOH . E 5 HOH X 99 580 580 HOH HOH . E 5 HOH X 100 582 582 HOH HOH . E 5 HOH X 101 583 583 HOH HOH . E 5 HOH X 102 585 585 HOH HOH . E 5 HOH X 103 589 589 HOH HOH . E 5 HOH X 104 590 590 HOH HOH . E 5 HOH X 105 592 592 HOH HOH . E 5 HOH X 106 594 594 HOH HOH . E 5 HOH X 107 596 596 HOH HOH . E 5 HOH X 108 597 597 HOH HOH . E 5 HOH X 109 598 598 HOH HOH . E 5 HOH X 110 599 599 HOH HOH . E 5 HOH X 111 600 600 HOH HOH . E 5 HOH X 112 601 601 HOH HOH . E 5 HOH X 113 602 602 HOH HOH . E 5 HOH X 114 604 604 HOH HOH . E 5 HOH X 115 605 605 HOH HOH . E 5 HOH X 116 607 607 HOH HOH . E 5 HOH X 117 611 611 HOH HOH . E 5 HOH X 118 612 612 HOH HOH . E 5 HOH X 119 614 614 HOH HOH . E 5 HOH X 120 615 615 HOH HOH . E 5 HOH X 121 619 619 HOH HOH . E 5 HOH X 122 620 620 HOH HOH . E 5 HOH X 123 622 622 HOH HOH . E 5 HOH X 124 623 623 HOH HOH . E 5 HOH X 125 628 628 HOH HOH . E 5 HOH X 126 630 630 HOH HOH . E 5 HOH X 127 631 631 HOH HOH . E 5 HOH X 128 634 634 HOH HOH . E 5 HOH X 129 636 636 HOH HOH . E 5 HOH X 130 637 637 HOH HOH . E 5 HOH X 131 653 653 HOH HOH . E 5 HOH X 132 655 655 HOH HOH . E 5 HOH X 133 657 657 HOH HOH . E 5 HOH X 134 658 658 HOH HOH . E 5 HOH X 135 659 659 HOH HOH . E 5 HOH X 136 661 661 HOH HOH . E 5 HOH X 137 662 662 HOH HOH . E 5 HOH X 138 663 663 HOH HOH . E 5 HOH X 139 664 664 HOH HOH . E 5 HOH X 140 669 669 HOH HOH . E 5 HOH X 141 670 670 HOH HOH . E 5 HOH X 142 671 671 HOH HOH . E 5 HOH X 143 673 673 HOH HOH . E 5 HOH X 144 674 674 HOH HOH . E 5 HOH X 145 675 675 HOH HOH . E 5 HOH X 146 676 676 HOH HOH . E 5 HOH X 147 677 677 HOH HOH . E 5 HOH X 148 678 678 HOH HOH . E 5 HOH X 149 679 679 HOH HOH . E 5 HOH X 150 682 682 HOH HOH . E 5 HOH X 151 688 688 HOH HOH . E 5 HOH X 152 690 690 HOH HOH . E 5 HOH X 153 691 691 HOH HOH . E 5 HOH X 154 692 692 HOH HOH . E 5 HOH X 155 694 694 HOH HOH . E 5 HOH X 156 697 697 HOH HOH . E 5 HOH X 157 700 700 HOH HOH . E 5 HOH X 158 701 701 HOH HOH . E 5 HOH X 159 703 703 HOH HOH . E 5 HOH X 160 707 707 HOH HOH . E 5 HOH X 161 708 708 HOH HOH . E 5 HOH X 162 711 711 HOH HOH . E 5 HOH X 163 718 718 HOH HOH . E 5 HOH X 164 719 719 HOH HOH . E 5 HOH X 165 721 721 HOH HOH . E 5 HOH X 166 722 722 HOH HOH . E 5 HOH X 167 723 723 HOH HOH . E 5 HOH X 168 730 730 HOH HOH . E 5 HOH X 169 733 733 HOH HOH . E 5 HOH X 170 735 735 HOH HOH . E 5 HOH X 171 736 736 HOH HOH . E 5 HOH X 172 738 738 HOH HOH . E 5 HOH X 173 739 739 HOH HOH . E 5 HOH X 174 741 741 HOH HOH . E 5 HOH X 175 742 742 HOH HOH . E 5 HOH X 176 743 743 HOH HOH . E 5 HOH X 177 744 744 HOH HOH . E 5 HOH X 178 746 746 HOH HOH . E 5 HOH X 179 747 747 HOH HOH . E 5 HOH X 180 750 750 HOH HOH . E 5 HOH X 181 752 752 HOH HOH . E 5 HOH X 182 753 753 HOH HOH . E 5 HOH X 183 756 756 HOH HOH . E 5 HOH X 184 757 757 HOH HOH . E 5 HOH X 185 758 758 HOH HOH . E 5 HOH X 186 761 761 HOH HOH . E 5 HOH X 187 763 763 HOH HOH . E 5 HOH X 188 764 764 HOH HOH . E 5 HOH X 189 766 766 HOH HOH . E 5 HOH X 190 772 772 HOH HOH . E 5 HOH X 191 778 778 HOH HOH . E 5 HOH X 192 779 779 HOH HOH . E 5 HOH X 193 780 780 HOH HOH . E 5 HOH X 194 783 783 HOH HOH . E 5 HOH X 195 787 787 HOH HOH . E 5 HOH X 196 789 789 HOH HOH . E 5 HOH X 197 793 793 HOH HOH . E 5 HOH X 198 800 800 HOH HOH . E 5 HOH X 199 804 804 HOH HOH . E 5 HOH X 200 805 805 HOH HOH . E 5 HOH X 201 806 806 HOH HOH . E 5 HOH X 202 808 808 HOH HOH . E 5 HOH X 203 813 813 HOH HOH . E 5 HOH X 204 820 820 HOH HOH . E 5 HOH X 205 821 821 HOH HOH . E 5 HOH X 206 824 824 HOH HOH . E 5 HOH X 207 827 827 HOH HOH . E 5 HOH X 208 829 829 HOH HOH . E 5 HOH X 209 830 830 HOH HOH . E 5 HOH X 210 839 839 HOH HOH . E 5 HOH X 211 841 841 HOH HOH . E 5 HOH X 212 842 842 HOH HOH . E 5 HOH X 213 843 843 HOH HOH . E 5 HOH X 214 844 844 HOH HOH . E 5 HOH X 215 846 846 HOH HOH . E 5 HOH X 216 847 847 HOH HOH . E 5 HOH X 217 863 863 HOH HOH . E 5 HOH X 218 864 864 HOH HOH . E 5 HOH X 219 870 870 HOH HOH . E 5 HOH X 220 875 875 HOH HOH . E 5 HOH X 221 879 879 HOH HOH . E 5 HOH X 222 882 882 HOH HOH . E 5 HOH X 223 885 885 HOH HOH . E 5 HOH X 224 887 887 HOH HOH . E 5 HOH X 225 890 890 HOH HOH . E 5 HOH X 226 898 898 HOH HOH . E 5 HOH X 227 905 905 HOH HOH . E 5 HOH X 228 913 913 HOH HOH . E 5 HOH X 229 914 914 HOH HOH . E 5 HOH X 230 916 916 HOH HOH . E 5 HOH X 231 918 918 HOH HOH . E 5 HOH X 232 924 924 HOH HOH . E 5 HOH X 233 933 933 HOH HOH . E 5 HOH X 234 935 935 HOH HOH . E 5 HOH X 235 937 937 HOH HOH . E 5 HOH X 236 938 938 HOH HOH . E 5 HOH X 237 950 950 HOH HOH . E 5 HOH X 238 954 954 HOH HOH . E 5 HOH X 239 955 955 HOH HOH . E 5 HOH X 240 961 961 HOH HOH . E 5 HOH X 241 969 969 HOH HOH . E 5 HOH X 242 977 977 HOH HOH . E 5 HOH X 243 984 984 HOH HOH . E 5 HOH X 244 991 991 HOH HOH . E 5 HOH X 245 993 993 HOH HOH . E 5 HOH X 246 997 997 HOH HOH . E 5 HOH X 247 999 999 HOH HOH . E 5 HOH X 248 1000 1000 HOH HOH . E 5 HOH X 249 1001 1001 HOH HOH . E 5 HOH X 250 1010 1010 HOH HOH . E 5 HOH X 251 1011 1011 HOH HOH . E 5 HOH X 252 1019 1019 HOH HOH . E 5 HOH X 253 1021 1021 HOH HOH . E 5 HOH X 254 1023 1023 HOH HOH . E 5 HOH X 255 1028 1028 HOH HOH . E 5 HOH X 256 1029 1029 HOH HOH . E 5 HOH X 257 1031 1031 HOH HOH . E 5 HOH X 258 1033 1033 HOH HOH . E 5 HOH X 259 1034 1034 HOH HOH . E 5 HOH X 260 1035 1035 HOH HOH . E 5 HOH X 261 1036 1036 HOH HOH . E 5 HOH X 262 1037 1037 HOH HOH . E 5 HOH X 263 1038 1038 HOH HOH . E 5 HOH X 264 1043 1043 HOH HOH . E 5 HOH X 265 1045 1045 HOH HOH . E 5 HOH X 266 1047 1047 HOH HOH . E 5 HOH X 267 1053 1053 HOH HOH . E 5 HOH X 268 1061 1061 HOH HOH . E 5 HOH X 269 1062 1062 HOH HOH . E 5 HOH X 270 1064 1064 HOH HOH . E 5 HOH X 271 1079 1079 HOH HOH . E 5 HOH X 272 1080 1080 HOH HOH . E 5 HOH X 273 1090 1090 HOH HOH . E 5 HOH X 274 1096 1096 HOH HOH . E 5 HOH X 275 1098 1098 HOH HOH . E 5 HOH X 276 1101 1101 HOH HOH . E 5 HOH X 277 1104 1104 HOH HOH . E 5 HOH X 278 1105 1105 HOH HOH . E 5 HOH X 279 1108 1108 HOH HOH . E 5 HOH X 280 1111 1111 HOH HOH . E 5 HOH X 281 1112 1112 HOH HOH . E 5 HOH X 282 1113 1113 HOH HOH . E 5 HOH X 283 1121 1121 HOH HOH . E 5 HOH X 284 1122 1122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 LDP . . . B 2 66.803 17.867 39.222 0.5 46.01 ? C7 LDP 433 X 1 HETATM 2 C C1 LDP . . . B 2 66.956 17.791 40.726 0.5 46.06 ? C1 LDP 433 X 1 HETATM 3 C C4 LDP . . . B 2 67.297 17.727 43.524 0.5 46.42 ? C4 LDP 433 X 1 HETATM 4 C C2 LDP . . . B 2 66.396 16.729 41.443 0.5 46.18 ? C2 LDP 433 X 1 HETATM 5 C C6 LDP . . . B 2 67.664 18.795 41.387 0.5 46.32 ? C6 LDP 433 X 1 HETATM 6 C C5 LDP . . . B 2 67.84 18.763 42.772 0.5 46.34 ? C5 LDP 433 X 1 HETATM 7 C C3 LDP . . . B 2 66.545 16.664 42.827 0.5 46.17 ? C3 LDP 433 X 1 HETATM 8 O O1 LDP . . . B 2 66.022 15.646 43.558 0.5 46.27 ? O1 LDP 433 X 1 HETATM 9 O O2 LDP . . . B 2 67.448 17.664 44.878 0.5 46.73 ? O2 LDP 433 X 1 HETATM 10 C C8 LDP . . . B 2 67.459 16.663 38.542 0.5 45.37 ? C8 LDP 433 X 1 HETATM 11 N N1 LDP . . . B 2 67.004 16.536 37.166 0.5 44.68 ? N1 LDP 433 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #