data_3NK4 # _model_server_result.job_id xilXvbBPRwgbjNQfJPCMFg _model_server_result.datetime_utc '2025-03-06 01:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":911}' # _entry.id 3NK4 # _exptl.entry_id 3NK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NK4 _cell.length_a 97.7 _cell.length_b 97.7 _cell.length_c 256.419 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 58 1_555 A SG CYS 102 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? disulf ? disulf2 A SG CYS 40 A CYS 90 1_555 A SG CYS 61 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf3 A SG CYS 179 A CYS 229 1_555 A SG CYS 245 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 201 A CYS 251 1_555 A SG CYS 285 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 A SG CYS 263 A CYS 313 1_555 A SG CYS 282 A CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf6 A SG CYS 284 A CYS 334 1_555 A SG CYS 290 A CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf7 B SG CYS 8 B CYS 58 1_555 B SG CYS 102 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf8 B SG CYS 40 B CYS 90 1_555 B SG CYS 61 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf9 B SG CYS 179 B CYS 229 1_555 B SG CYS 245 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 B SG CYS 201 B CYS 251 1_555 B SG CYS 285 B CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 B SG CYS 263 B CYS 313 1_555 B SG CYS 282 B CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf12 B SG CYS 284 B CYS 334 1_555 B SG CYS 290 B CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A OG1 THR 118 A THR 168 1_555 E C1 A2G . A A2G 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 113 n n CAC OA1 FLC doub 114 n n CAC OA2 FLC sing 115 n n CA CB FLC sing 116 n n CA HA1 FLC sing 117 n n CA HA2 FLC sing 118 n n CB CBC FLC sing 119 n n CB CG FLC sing 120 n n CB OHB FLC sing 121 n n CBC OB1 FLC doub 122 n n CBC OB2 FLC sing 123 n n CG CGC FLC sing 124 n n CG HG1 FLC sing 125 n n CG HG2 FLC sing 126 n n CGC OG1 FLC doub 127 n n CGC OG2 FLC sing 128 n n OHB HOB FLC sing 129 n n # _atom_sites.entry_id 3NK4 _atom_sites.fract_transf_matrix[1][1] 0.010235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 A2G A 1 900 900 A2G A2G . F 4 FLC A 1 911 911 FLC FLC . G 4 FLC C 1 910 910 FLC FLC . H 5 HOH A 1 2 2 HOH HOH . H 5 HOH A 2 4 4 HOH HOH . H 5 HOH A 3 7 7 HOH HOH . H 5 HOH A 4 10 10 HOH HOH . H 5 HOH A 5 11 11 HOH HOH . H 5 HOH A 6 12 12 HOH HOH . H 5 HOH A 7 13 13 HOH HOH . H 5 HOH A 8 17 17 HOH HOH . H 5 HOH A 9 19 19 HOH HOH . H 5 HOH A 10 21 21 HOH HOH . H 5 HOH A 11 22 22 HOH HOH . H 5 HOH A 12 24 24 HOH HOH . H 5 HOH A 13 25 25 HOH HOH . H 5 HOH A 14 29 29 HOH HOH . H 5 HOH A 15 30 30 HOH HOH . H 5 HOH A 16 36 36 HOH HOH . H 5 HOH A 17 41 41 HOH HOH . H 5 HOH A 18 43 43 HOH HOH . H 5 HOH A 19 44 44 HOH HOH . H 5 HOH A 20 45 45 HOH HOH . H 5 HOH A 21 48 48 HOH HOH . H 5 HOH A 22 50 50 HOH HOH . H 5 HOH A 23 348 348 HOH HOH . H 5 HOH A 24 349 349 HOH HOH . H 5 HOH A 25 350 350 HOH HOH . H 5 HOH A 26 351 351 HOH HOH . H 5 HOH A 27 352 352 HOH HOH . H 5 HOH A 28 353 353 HOH HOH . H 5 HOH A 29 354 354 HOH HOH . H 5 HOH A 30 355 355 HOH HOH . H 5 HOH A 31 356 356 HOH HOH . H 5 HOH A 32 357 357 HOH HOH . H 5 HOH A 33 358 358 HOH HOH . H 5 HOH A 34 359 359 HOH HOH . H 5 HOH A 35 360 360 HOH HOH . H 5 HOH A 36 361 361 HOH HOH . H 5 HOH A 37 362 362 HOH HOH . H 5 HOH A 38 363 363 HOH HOH . H 5 HOH A 39 364 364 HOH HOH . H 5 HOH A 40 365 365 HOH HOH . H 5 HOH A 41 366 366 HOH HOH . H 5 HOH A 42 367 367 HOH HOH . H 5 HOH A 43 368 368 HOH HOH . H 5 HOH A 44 369 369 HOH HOH . H 5 HOH A 45 370 370 HOH HOH . H 5 HOH A 46 371 371 HOH HOH . H 5 HOH A 47 372 372 HOH HOH . H 5 HOH A 48 373 373 HOH HOH . H 5 HOH A 49 374 374 HOH HOH . H 5 HOH A 50 375 375 HOH HOH . H 5 HOH A 51 376 376 HOH HOH . H 5 HOH A 52 377 377 HOH HOH . H 5 HOH A 53 378 378 HOH HOH . H 5 HOH A 54 379 379 HOH HOH . H 5 HOH A 55 380 380 HOH HOH . H 5 HOH A 56 381 381 HOH HOH . H 5 HOH A 57 382 382 HOH HOH . H 5 HOH A 58 383 383 HOH HOH . H 5 HOH A 59 384 384 HOH HOH . H 5 HOH A 60 385 385 HOH HOH . H 5 HOH A 61 386 386 HOH HOH . H 5 HOH A 62 387 387 HOH HOH . H 5 HOH A 63 388 388 HOH HOH . H 5 HOH A 64 389 389 HOH HOH . H 5 HOH A 65 390 390 HOH HOH . H 5 HOH A 66 391 391 HOH HOH . H 5 HOH A 67 392 392 HOH HOH . H 5 HOH A 68 393 393 HOH HOH . H 5 HOH A 69 394 394 HOH HOH . H 5 HOH A 70 395 395 HOH HOH . H 5 HOH A 71 396 396 HOH HOH . H 5 HOH A 72 397 397 HOH HOH . H 5 HOH A 73 398 398 HOH HOH . H 5 HOH A 74 399 399 HOH HOH . H 5 HOH A 75 400 400 HOH HOH . H 5 HOH A 76 401 401 HOH HOH . H 5 HOH A 77 402 402 HOH HOH . H 5 HOH A 78 403 403 HOH HOH . H 5 HOH A 79 404 404 HOH HOH . H 5 HOH A 80 405 405 HOH HOH . H 5 HOH A 81 406 406 HOH HOH . H 5 HOH A 82 407 407 HOH HOH . H 5 HOH A 83 408 408 HOH HOH . H 5 HOH A 84 409 409 HOH HOH . H 5 HOH A 85 410 410 HOH HOH . H 5 HOH A 86 411 411 HOH HOH . H 5 HOH A 87 412 412 HOH HOH . H 5 HOH A 88 413 413 HOH HOH . H 5 HOH A 89 414 414 HOH HOH . H 5 HOH A 90 415 415 HOH HOH . H 5 HOH A 91 416 416 HOH HOH . H 5 HOH A 92 417 417 HOH HOH . H 5 HOH A 93 418 418 HOH HOH . H 5 HOH A 94 419 419 HOH HOH . H 5 HOH A 95 420 420 HOH HOH . H 5 HOH A 96 421 421 HOH HOH . H 5 HOH A 97 422 422 HOH HOH . H 5 HOH A 98 423 423 HOH HOH . H 5 HOH A 99 424 424 HOH HOH . H 5 HOH A 100 425 425 HOH HOH . H 5 HOH A 101 426 426 HOH HOH . I 5 HOH B 1 1 1 HOH HOH . I 5 HOH B 2 3 3 HOH HOH . I 5 HOH B 3 5 5 HOH HOH . I 5 HOH B 4 6 6 HOH HOH . I 5 HOH B 5 8 8 HOH HOH . I 5 HOH B 6 9 9 HOH HOH . I 5 HOH B 7 14 14 HOH HOH . I 5 HOH B 8 15 15 HOH HOH . I 5 HOH B 9 18 18 HOH HOH . I 5 HOH B 10 20 20 HOH HOH . I 5 HOH B 11 23 23 HOH HOH . I 5 HOH B 12 26 26 HOH HOH . I 5 HOH B 13 27 27 HOH HOH . I 5 HOH B 14 28 28 HOH HOH . I 5 HOH B 15 31 31 HOH HOH . I 5 HOH B 16 32 32 HOH HOH . I 5 HOH B 17 33 33 HOH HOH . I 5 HOH B 18 34 34 HOH HOH . I 5 HOH B 19 35 35 HOH HOH . I 5 HOH B 20 37 37 HOH HOH . I 5 HOH B 21 38 38 HOH HOH . I 5 HOH B 22 39 39 HOH HOH . I 5 HOH B 23 42 42 HOH HOH . I 5 HOH B 24 46 46 HOH HOH . I 5 HOH B 25 348 348 HOH HOH . I 5 HOH B 26 349 349 HOH HOH . I 5 HOH B 27 350 350 HOH HOH . I 5 HOH B 28 351 351 HOH HOH . I 5 HOH B 29 352 352 HOH HOH . I 5 HOH B 30 353 353 HOH HOH . I 5 HOH B 31 354 354 HOH HOH . I 5 HOH B 32 355 355 HOH HOH . I 5 HOH B 33 356 356 HOH HOH . I 5 HOH B 34 357 357 HOH HOH . I 5 HOH B 35 358 358 HOH HOH . I 5 HOH B 36 359 359 HOH HOH . I 5 HOH B 37 360 360 HOH HOH . I 5 HOH B 38 361 361 HOH HOH . I 5 HOH B 39 362 362 HOH HOH . I 5 HOH B 40 363 363 HOH HOH . I 5 HOH B 41 364 364 HOH HOH . I 5 HOH B 42 365 365 HOH HOH . I 5 HOH B 43 366 366 HOH HOH . I 5 HOH B 44 367 367 HOH HOH . I 5 HOH B 45 368 368 HOH HOH . I 5 HOH B 46 369 369 HOH HOH . I 5 HOH B 47 370 370 HOH HOH . I 5 HOH B 48 371 371 HOH HOH . I 5 HOH B 49 372 372 HOH HOH . I 5 HOH B 50 373 373 HOH HOH . I 5 HOH B 51 374 374 HOH HOH . I 5 HOH B 52 375 375 HOH HOH . I 5 HOH B 53 376 376 HOH HOH . I 5 HOH B 54 377 377 HOH HOH . I 5 HOH B 55 378 378 HOH HOH . I 5 HOH B 56 379 379 HOH HOH . I 5 HOH B 57 380 380 HOH HOH . I 5 HOH B 58 381 381 HOH HOH . I 5 HOH B 59 382 382 HOH HOH . I 5 HOH B 60 383 383 HOH HOH . I 5 HOH B 61 384 384 HOH HOH . I 5 HOH B 62 385 385 HOH HOH . I 5 HOH B 63 386 386 HOH HOH . I 5 HOH B 64 387 387 HOH HOH . I 5 HOH B 65 388 388 HOH HOH . I 5 HOH B 66 389 389 HOH HOH . I 5 HOH B 67 390 390 HOH HOH . I 5 HOH B 68 391 391 HOH HOH . I 5 HOH B 69 392 392 HOH HOH . I 5 HOH B 70 393 393 HOH HOH . I 5 HOH B 71 394 394 HOH HOH . I 5 HOH B 72 395 395 HOH HOH . I 5 HOH B 73 396 396 HOH HOH . I 5 HOH B 74 397 397 HOH HOH . I 5 HOH B 75 398 398 HOH HOH . I 5 HOH B 76 399 399 HOH HOH . I 5 HOH B 77 400 400 HOH HOH . I 5 HOH B 78 401 401 HOH HOH . I 5 HOH B 79 402 402 HOH HOH . I 5 HOH B 80 403 403 HOH HOH . I 5 HOH B 81 404 404 HOH HOH . I 5 HOH B 82 405 405 HOH HOH . I 5 HOH B 83 406 406 HOH HOH . I 5 HOH B 84 407 407 HOH HOH . J 5 HOH C 1 16 16 HOH HOH . J 5 HOH C 2 40 40 HOH HOH . J 5 HOH C 3 49 49 HOH HOH . J 5 HOH C 4 60 60 HOH HOH . J 5 HOH C 5 65 65 HOH HOH . J 5 HOH C 6 68 68 HOH HOH . J 5 HOH C 7 90 90 HOH HOH . J 5 HOH C 8 104 104 HOH HOH . J 5 HOH C 9 107 107 HOH HOH . J 5 HOH C 10 123 123 HOH HOH . J 5 HOH C 11 133 133 HOH HOH . J 5 HOH C 12 147 147 HOH HOH . J 5 HOH C 13 182 182 HOH HOH . J 5 HOH C 14 183 183 HOH HOH . J 5 HOH C 15 192 192 HOH HOH . K 5 HOH D 1 47 47 HOH HOH . K 5 HOH D 2 91 91 HOH HOH . K 5 HOH D 3 105 105 HOH HOH . K 5 HOH D 4 116 116 HOH HOH . K 5 HOH D 5 124 124 HOH HOH . K 5 HOH D 6 167 167 HOH HOH . K 5 HOH D 7 175 175 HOH HOH . K 5 HOH D 8 196 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . F 4 16.551 87.123 104.089 0.94 122.55 ? CAC FLC 911 A 1 HETATM 2 C CA FLC . . . F 4 16.334 86.528 102.706 0.94 115.52 ? CA FLC 911 A 1 HETATM 3 C CB FLC . . . F 4 16.544 87.492 101.539 0.94 116.59 ? CB FLC 911 A 1 HETATM 4 C CBC FLC . . . F 4 15.599 88.684 101.605 0.94 134.46 ? CBC FLC 911 A 1 HETATM 5 C CG FLC . . . F 4 16.377 86.718 100.232 0.94 103.55 ? CG FLC 911 A 1 HETATM 6 C CGC FLC . . . F 4 16.575 87.635 99.056 0.94 110.13 ? CGC FLC 911 A 1 HETATM 7 O OA1 FLC . . . F 4 16.535 88.364 104.27 0.94 123.36 ? OA1 FLC 911 A 1 HETATM 8 O OA2 FLC . . . F 4 16.729 86.321 105.036 0.94 114.8 ? OA2 FLC 911 A 1 HETATM 9 O OB1 FLC . . . F 4 14.945 88.896 102.653 0.94 135.07 ? OB1 FLC 911 A 1 HETATM 10 O OB2 FLC . . . F 4 15.507 89.453 100.62 0.94 133.03 ? OB2 FLC 911 A 1 HETATM 11 O OG1 FLC . . . F 4 17.627 88.304 99.03 0.94 107.37 ? OG1 FLC 911 A 1 HETATM 12 O OG2 FLC . . . F 4 15.685 87.696 98.171 0.94 105.69 ? OG2 FLC 911 A 1 HETATM 13 O OHB FLC . . . F 4 17.881 87.972 101.601 0.94 123.72 ? OHB FLC 911 A 1 HETATM 14 H HA1 FLC . . . F 4 15.317 86.135 102.652 0.94 138.57 ? HA1 FLC 911 A 1 HETATM 15 H HA2 FLC . . . F 4 17.012 85.68 102.582 0.94 138.57 ? HA2 FLC 911 A 1 HETATM 16 H HG1 FLC . . . F 4 15.378 86.279 100.191 0.94 124.21 ? HG1 FLC 911 A 1 HETATM 17 H HG2 FLC . . . F 4 17.106 85.906 100.191 0.94 124.21 ? HG2 FLC 911 A 1 HETATM 18 H HOB FLC . . . F 4 17.987 88.531 102.383 0.94 148.42 ? HOB FLC 911 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #