data_3NKU # _model_server_result.job_id rRP60wzNXODW0THLIMKJjw _model_server_result.datetime_utc '2024-12-08 05:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3NKU # _exptl.entry_id 3NKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NKU _cell.length_a 47.609 _cell.length_b 49.955 _cell.length_c 159.775 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 70 A GLU 75 1_555 A N MSE 71 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale2 A C MSE 71 A MSE 76 1_555 A N ILE 72 A ILE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C GLU 82 A GLU 87 1_555 A N MSE 83 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 83 A MSE 88 1_555 A N PRO 84 A PRO 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale5 A C ASP 86 A ASP 91 1_555 A N MSE 87 A MSE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 87 A MSE 92 1_555 A N GLU 88 A GLU 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C GLY 163 A GLY 168 1_555 A N MSE 164 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 164 A MSE 169 1_555 A N LEU 165 A LEU 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C GLY 168 A GLY 173 1_555 A N MSE 169 A MSE 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C MSE 169 A MSE 174 1_555 A N VAL 170 A VAL 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C ALA 177 A ALA 182 1_555 A N MSE 178 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 A C MSE 178 A MSE 183 1_555 A N SER 179 A SER 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C GLU 70 B GLU 75 1_555 B N MSE 71 B MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale14 B C MSE 71 B MSE 76 1_555 B N ILE 72 B ILE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale15 B C GLU 82 B GLU 87 1_555 B N MSE 83 B MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 B C MSE 83 B MSE 88 1_555 B N PRO 84 B PRO 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale17 B C ASP 86 B ASP 91 1_555 B N MSE 87 B MSE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 87 B MSE 92 1_555 B N GLU 88 B GLU 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 B C GLY 163 B GLY 168 1_555 B N MSE 164 B MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale20 B C MSE 164 B MSE 169 1_555 B N LEU 165 B LEU 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale21 B C GLY 168 B GLY 173 1_555 B N MSE 169 B MSE 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale22 B C MSE 169 B MSE 174 1_555 B N VAL 170 B VAL 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale23 B C ALA 177 B ALA 182 1_555 B N MSE 178 B MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale24 B C MSE 178 B MSE 183 1_555 B N SER 179 B SER 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 B C ASN 208 B ASN 213 1_555 B N MSE 209 B MSE 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale26 B C MSE 209 B MSE 214 1_555 B N VAL 210 B VAL 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 3NKU _atom_sites.fract_transf_matrix[1][1] 0.021004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 1 1 PEG PEG . D 3 PGE A 1 220 220 PGE PGE . E 4 HOH A 1 4 4 HOH HOH . E 4 HOH A 2 221 221 HOH HOH . E 4 HOH A 3 222 222 HOH HOH . E 4 HOH A 4 223 223 HOH HOH . E 4 HOH A 5 224 224 HOH HOH . E 4 HOH A 6 225 225 HOH HOH . E 4 HOH A 7 226 226 HOH HOH . E 4 HOH A 8 227 227 HOH HOH . E 4 HOH A 9 228 228 HOH HOH . E 4 HOH A 10 229 229 HOH HOH . E 4 HOH A 11 230 230 HOH HOH . E 4 HOH A 12 231 231 HOH HOH . E 4 HOH A 13 232 232 HOH HOH . E 4 HOH A 14 233 233 HOH HOH . E 4 HOH A 15 234 234 HOH HOH . E 4 HOH A 16 235 235 HOH HOH . E 4 HOH A 17 236 236 HOH HOH . E 4 HOH A 18 237 237 HOH HOH . E 4 HOH A 19 238 238 HOH HOH . E 4 HOH A 20 239 239 HOH HOH . E 4 HOH A 21 240 240 HOH HOH . E 4 HOH A 22 241 241 HOH HOH . E 4 HOH A 23 242 242 HOH HOH . E 4 HOH A 24 243 243 HOH HOH . E 4 HOH A 25 244 244 HOH HOH . E 4 HOH A 26 245 245 HOH HOH . E 4 HOH A 27 246 246 HOH HOH . E 4 HOH A 28 247 247 HOH HOH . E 4 HOH A 29 248 248 HOH HOH . E 4 HOH A 30 249 249 HOH HOH . E 4 HOH A 31 250 250 HOH HOH . E 4 HOH A 32 251 251 HOH HOH . E 4 HOH A 33 252 252 HOH HOH . E 4 HOH A 34 253 253 HOH HOH . E 4 HOH A 35 254 254 HOH HOH . E 4 HOH A 36 255 255 HOH HOH . F 4 HOH B 1 1 1 HOH HOH . F 4 HOH B 2 2 2 HOH HOH . F 4 HOH B 3 3 3 HOH HOH . F 4 HOH B 4 220 220 HOH HOH . F 4 HOH B 5 221 221 HOH HOH . F 4 HOH B 6 222 222 HOH HOH . F 4 HOH B 7 223 223 HOH HOH . F 4 HOH B 8 224 224 HOH HOH . F 4 HOH B 9 225 225 HOH HOH . F 4 HOH B 10 226 226 HOH HOH . F 4 HOH B 11 227 227 HOH HOH . F 4 HOH B 12 228 228 HOH HOH . F 4 HOH B 13 229 229 HOH HOH . F 4 HOH B 14 230 230 HOH HOH . F 4 HOH B 15 231 231 HOH HOH . F 4 HOH B 16 232 232 HOH HOH . F 4 HOH B 17 233 233 HOH HOH . F 4 HOH B 18 234 234 HOH HOH . F 4 HOH B 19 235 235 HOH HOH . F 4 HOH B 20 236 236 HOH HOH . F 4 HOH B 21 237 237 HOH HOH . F 4 HOH B 22 238 238 HOH HOH . F 4 HOH B 23 239 239 HOH HOH . F 4 HOH B 24 240 240 HOH HOH . F 4 HOH B 25 241 241 HOH HOH . F 4 HOH B 26 242 242 HOH HOH . F 4 HOH B 27 243 243 HOH HOH . F 4 HOH B 28 244 244 HOH HOH . F 4 HOH B 29 245 245 HOH HOH . F 4 HOH B 30 246 246 HOH HOH . F 4 HOH B 31 247 247 HOH HOH . F 4 HOH B 32 248 248 HOH HOH . F 4 HOH B 33 249 249 HOH HOH . F 4 HOH B 34 250 250 HOH HOH . F 4 HOH B 35 251 251 HOH HOH . F 4 HOH B 36 252 252 HOH HOH . F 4 HOH B 37 253 253 HOH HOH . F 4 HOH B 38 254 254 HOH HOH . F 4 HOH B 39 255 255 HOH HOH . F 4 HOH B 40 256 256 HOH HOH . F 4 HOH B 41 257 257 HOH HOH . F 4 HOH B 42 258 258 HOH HOH . F 4 HOH B 43 259 259 HOH HOH . F 4 HOH B 44 260 260 HOH HOH . F 4 HOH B 45 261 261 HOH HOH . F 4 HOH B 46 262 262 HOH HOH . F 4 HOH B 47 263 263 HOH HOH . F 4 HOH B 48 264 264 HOH HOH . F 4 HOH B 49 265 265 HOH HOH . F 4 HOH B 50 266 266 HOH HOH . F 4 HOH B 51 267 267 HOH HOH . F 4 HOH B 52 268 268 HOH HOH . F 4 HOH B 53 269 269 HOH HOH . F 4 HOH B 54 270 270 HOH HOH . F 4 HOH B 55 271 271 HOH HOH . F 4 HOH B 56 272 272 HOH HOH . F 4 HOH B 57 273 273 HOH HOH . F 4 HOH B 58 274 274 HOH HOH . F 4 HOH B 59 275 275 HOH HOH . F 4 HOH B 60 276 276 HOH HOH . F 4 HOH B 61 277 277 HOH HOH . F 4 HOH B 62 278 278 HOH HOH . F 4 HOH B 63 279 279 HOH HOH . F 4 HOH B 64 280 280 HOH HOH . F 4 HOH B 65 281 281 HOH HOH . F 4 HOH B 66 282 282 HOH HOH . F 4 HOH B 67 283 283 HOH HOH . F 4 HOH B 68 284 284 HOH HOH . F 4 HOH B 69 285 285 HOH HOH . F 4 HOH B 70 286 286 HOH HOH . F 4 HOH B 71 287 287 HOH HOH . F 4 HOH B 72 288 288 HOH HOH . F 4 HOH B 73 289 289 HOH HOH . F 4 HOH B 74 290 290 HOH HOH . F 4 HOH B 75 291 291 HOH HOH . F 4 HOH B 76 292 292 HOH HOH . F 4 HOH B 77 293 293 HOH HOH . F 4 HOH B 78 294 294 HOH HOH . F 4 HOH B 79 295 295 HOH HOH . F 4 HOH B 80 296 296 HOH HOH . F 4 HOH B 81 297 297 HOH HOH . F 4 HOH B 82 298 298 HOH HOH . F 4 HOH B 83 299 299 HOH HOH . F 4 HOH B 84 300 300 HOH HOH . F 4 HOH B 85 301 301 HOH HOH . F 4 HOH B 86 302 302 HOH HOH . F 4 HOH B 87 303 303 HOH HOH . F 4 HOH B 88 304 304 HOH HOH . F 4 HOH B 89 305 305 HOH HOH . F 4 HOH B 90 306 306 HOH HOH . F 4 HOH B 91 307 307 HOH HOH . F 4 HOH B 92 308 308 HOH HOH . F 4 HOH B 93 309 309 HOH HOH . F 4 HOH B 94 310 310 HOH HOH . F 4 HOH B 95 311 311 HOH HOH . F 4 HOH B 96 312 312 HOH HOH . F 4 HOH B 97 313 313 HOH HOH . F 4 HOH B 98 314 314 HOH HOH . F 4 HOH B 99 315 315 HOH HOH . F 4 HOH B 100 316 316 HOH HOH . F 4 HOH B 101 317 317 HOH HOH . F 4 HOH B 102 318 318 HOH HOH . F 4 HOH B 103 319 319 HOH HOH . F 4 HOH B 104 320 320 HOH HOH . F 4 HOH B 105 321 321 HOH HOH . F 4 HOH B 106 322 322 HOH HOH . F 4 HOH B 107 323 323 HOH HOH . F 4 HOH B 108 324 324 HOH HOH . F 4 HOH B 109 325 325 HOH HOH . F 4 HOH B 110 326 326 HOH HOH . F 4 HOH B 111 327 327 HOH HOH . F 4 HOH B 112 328 328 HOH HOH . F 4 HOH B 113 329 329 HOH HOH . F 4 HOH B 114 330 330 HOH HOH . F 4 HOH B 115 331 331 HOH HOH . F 4 HOH B 116 332 332 HOH HOH . F 4 HOH B 117 333 333 HOH HOH . F 4 HOH B 118 334 334 HOH HOH . F 4 HOH B 119 335 335 HOH HOH . F 4 HOH B 120 336 336 HOH HOH . F 4 HOH B 121 337 337 HOH HOH . F 4 HOH B 122 338 338 HOH HOH . F 4 HOH B 123 339 339 HOH HOH . F 4 HOH B 124 340 340 HOH HOH . F 4 HOH B 125 341 341 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . C 2 62.361 22.72 41.11 1 61.09 ? C1 PEG 1 A 1 HETATM 2 O O1 PEG . . . C 2 63.15 21.991 42.065 1 63.81 ? O1 PEG 1 A 1 HETATM 3 C C2 PEG . . . C 2 61.056 21.978 40.815 1 61.09 ? C2 PEG 1 A 1 HETATM 4 O O2 PEG . . . C 2 60.698 22.042 39.39 1 58.61 ? O2 PEG 1 A 1 HETATM 5 C C3 PEG . . . C 2 59.75 21.049 39.051 1 57.22 ? C3 PEG 1 A 1 HETATM 6 C C4 PEG . . . C 2 60.069 20.351 37.705 1 55.71 ? C4 PEG 1 A 1 HETATM 7 O O4 PEG . . . C 2 60.008 18.914 37.874 1 54.26 ? O4 PEG 1 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 7 #