data_3NKX
#
_model_server_result.job_id            7ab1A2OLLWdVLv5h8R-7nA 
_model_server_result.datetime_utc      '2024-11-26 13:20:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nkx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":247}' 
#
_entry.id    3NKX 
#
_exptl.entry_id    3NKX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              74.079 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROPANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NKX 
_cell.length_a            72.41 
_cell.length_b            83.85 
_cell.length_c            111.67 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NKX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C THR 4 P THR 258 1_555 C N SEP 5 P SEP 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 C C SEP 5 P SEP 259 1_555 C N THR 6 P THR 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale3 D C THR 4 Q THR 258 1_555 D N SEP 5 Q SEP 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 D C SEP 5 Q SEP 259 1_555 D N THR 6 Q THR 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C3 H6 O2' 
_chem_comp.formula_weight    74.079 
_chem_comp.id                PPI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROPANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PPI sing 260 n n 
C1 O1 PPI doub 261 n n 
C1 O2 PPI sing 262 n n 
C2 C3 PPI sing 263 n n 
C2 H21 PPI sing 264 n n 
C2 H22 PPI sing 265 n n 
C3 H31 PPI sing 266 n n 
C3 H32 PPI sing 267 n n 
C3 H33 PPI sing 268 n n 
O2 HO2 PPI sing 269 n n 
#
_atom_sites.entry_id                     3NKX 
_atom_sites.fract_transf_matrix[1][1]    0.01381 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011926 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PPI A 1 247 247 PPI PPI . 
F 4 HOH A 1 246 23 HOH HOH . 
F 4 HOH A 2 248 32 HOH HOH . 
F 4 HOH A 3 249 34 HOH HOH . 
F 4 HOH A 4 250 37 HOH HOH . 
F 4 HOH A 5 251 39 HOH HOH . 
F 4 HOH A 6 252 41 HOH HOH . 
F 4 HOH A 7 253 43 HOH HOH . 
F 4 HOH A 8 254 45 HOH HOH . 
F 4 HOH A 9 255 47 HOH HOH . 
F 4 HOH A 10 256 49 HOH HOH . 
F 4 HOH A 11 257 51 HOH HOH . 
F 4 HOH A 12 258 53 HOH HOH . 
F 4 HOH A 13 259 55 HOH HOH . 
F 4 HOH A 14 260 57 HOH HOH . 
F 4 HOH A 15 261 60 HOH HOH . 
F 4 HOH A 16 262 62 HOH HOH . 
F 4 HOH A 17 263 64 HOH HOH . 
F 4 HOH A 18 264 66 HOH HOH . 
F 4 HOH A 19 265 69 HOH HOH . 
F 4 HOH A 20 266 71 HOH HOH . 
F 4 HOH A 21 267 73 HOH HOH . 
F 4 HOH A 22 268 76 HOH HOH . 
F 4 HOH A 23 269 78 HOH HOH . 
F 4 HOH A 24 270 80 HOH HOH . 
F 4 HOH A 25 271 82 HOH HOH . 
F 4 HOH A 26 272 84 HOH HOH . 
F 4 HOH A 27 273 86 HOH HOH . 
F 4 HOH A 28 274 88 HOH HOH . 
F 4 HOH A 29 275 90 HOH HOH . 
F 4 HOH A 30 276 92 HOH HOH . 
F 4 HOH A 31 277 94 HOH HOH . 
F 4 HOH A 32 278 96 HOH HOH . 
F 4 HOH A 33 279 98 HOH HOH . 
F 4 HOH A 34 280 100 HOH HOH . 
F 4 HOH A 35 281 102 HOH HOH . 
F 4 HOH A 36 282 104 HOH HOH . 
F 4 HOH A 37 283 106 HOH HOH . 
F 4 HOH A 38 284 108 HOH HOH . 
F 4 HOH A 39 285 110 HOH HOH . 
F 4 HOH A 40 286 112 HOH HOH . 
F 4 HOH A 41 287 114 HOH HOH . 
F 4 HOH A 42 288 116 HOH HOH . 
F 4 HOH A 43 289 118 HOH HOH . 
F 4 HOH A 44 290 120 HOH HOH . 
F 4 HOH A 45 291 122 HOH HOH . 
F 4 HOH A 46 292 124 HOH HOH . 
F 4 HOH A 47 293 126 HOH HOH . 
F 4 HOH A 48 294 128 HOH HOH . 
F 4 HOH A 49 295 130 HOH HOH . 
F 4 HOH A 50 296 132 HOH HOH . 
F 4 HOH A 51 297 134 HOH HOH . 
F 4 HOH A 52 298 136 HOH HOH . 
F 4 HOH A 53 299 138 HOH HOH . 
F 4 HOH A 54 300 140 HOH HOH . 
F 4 HOH A 55 301 142 HOH HOH . 
F 4 HOH A 56 302 144 HOH HOH . 
F 4 HOH A 57 303 146 HOH HOH . 
F 4 HOH A 58 304 149 HOH HOH . 
F 4 HOH A 59 305 151 HOH HOH . 
F 4 HOH A 60 306 153 HOH HOH . 
F 4 HOH A 61 307 155 HOH HOH . 
F 4 HOH A 62 308 158 HOH HOH . 
F 4 HOH A 63 309 160 HOH HOH . 
F 4 HOH A 64 310 162 HOH HOH . 
F 4 HOH A 65 311 164 HOH HOH . 
F 4 HOH A 66 312 166 HOH HOH . 
F 4 HOH A 67 313 168 HOH HOH . 
F 4 HOH A 68 314 169 HOH HOH . 
F 4 HOH A 69 315 170 HOH HOH . 
F 4 HOH A 70 316 171 HOH HOH . 
F 4 HOH A 71 317 172 HOH HOH . 
F 4 HOH A 72 318 173 HOH HOH . 
F 4 HOH A 73 319 174 HOH HOH . 
F 4 HOH A 74 320 175 HOH HOH . 
F 4 HOH A 75 321 176 HOH HOH . 
F 4 HOH A 76 322 177 HOH HOH . 
F 4 HOH A 77 323 178 HOH HOH . 
F 4 HOH A 78 324 179 HOH HOH . 
F 4 HOH A 79 325 180 HOH HOH . 
F 4 HOH A 80 326 181 HOH HOH . 
F 4 HOH A 81 327 182 HOH HOH . 
F 4 HOH A 82 328 183 HOH HOH . 
G 4 HOH B 1 246 2 HOH HOH . 
G 4 HOH B 2 247 29 HOH HOH . 
G 4 HOH B 3 248 30 HOH HOH . 
G 4 HOH B 4 249 31 HOH HOH . 
G 4 HOH B 5 250 33 HOH HOH . 
G 4 HOH B 6 251 35 HOH HOH . 
G 4 HOH B 7 252 36 HOH HOH . 
G 4 HOH B 8 253 38 HOH HOH . 
G 4 HOH B 9 254 40 HOH HOH . 
G 4 HOH B 10 255 42 HOH HOH . 
G 4 HOH B 11 256 44 HOH HOH . 
G 4 HOH B 12 257 46 HOH HOH . 
G 4 HOH B 13 258 48 HOH HOH . 
G 4 HOH B 14 259 50 HOH HOH . 
G 4 HOH B 15 260 52 HOH HOH . 
G 4 HOH B 16 261 54 HOH HOH . 
G 4 HOH B 17 262 56 HOH HOH . 
G 4 HOH B 18 263 58 HOH HOH . 
G 4 HOH B 19 264 59 HOH HOH . 
G 4 HOH B 20 265 61 HOH HOH . 
G 4 HOH B 21 266 63 HOH HOH . 
G 4 HOH B 22 267 65 HOH HOH . 
G 4 HOH B 23 268 67 HOH HOH . 
G 4 HOH B 24 269 68 HOH HOH . 
G 4 HOH B 25 270 70 HOH HOH . 
G 4 HOH B 26 271 72 HOH HOH . 
G 4 HOH B 27 272 74 HOH HOH . 
G 4 HOH B 28 273 75 HOH HOH . 
G 4 HOH B 29 274 77 HOH HOH . 
G 4 HOH B 30 275 79 HOH HOH . 
G 4 HOH B 31 276 81 HOH HOH . 
G 4 HOH B 32 277 83 HOH HOH . 
G 4 HOH B 33 278 85 HOH HOH . 
G 4 HOH B 34 279 87 HOH HOH . 
G 4 HOH B 35 280 89 HOH HOH . 
G 4 HOH B 36 281 91 HOH HOH . 
G 4 HOH B 37 282 93 HOH HOH . 
G 4 HOH B 38 283 95 HOH HOH . 
G 4 HOH B 39 284 97 HOH HOH . 
G 4 HOH B 40 285 99 HOH HOH . 
G 4 HOH B 41 286 101 HOH HOH . 
G 4 HOH B 42 287 103 HOH HOH . 
G 4 HOH B 43 288 105 HOH HOH . 
G 4 HOH B 44 289 107 HOH HOH . 
G 4 HOH B 45 290 109 HOH HOH . 
G 4 HOH B 46 291 111 HOH HOH . 
G 4 HOH B 47 292 113 HOH HOH . 
G 4 HOH B 48 293 115 HOH HOH . 
G 4 HOH B 49 294 117 HOH HOH . 
G 4 HOH B 50 295 119 HOH HOH . 
G 4 HOH B 51 296 121 HOH HOH . 
G 4 HOH B 52 297 123 HOH HOH . 
G 4 HOH B 53 298 125 HOH HOH . 
G 4 HOH B 54 299 127 HOH HOH . 
G 4 HOH B 55 300 129 HOH HOH . 
G 4 HOH B 56 301 131 HOH HOH . 
G 4 HOH B 57 302 135 HOH HOH . 
G 4 HOH B 58 303 137 HOH HOH . 
G 4 HOH B 59 304 139 HOH HOH . 
G 4 HOH B 60 305 141 HOH HOH . 
G 4 HOH B 61 306 143 HOH HOH . 
G 4 HOH B 62 307 145 HOH HOH . 
G 4 HOH B 63 308 147 HOH HOH . 
G 4 HOH B 64 309 148 HOH HOH . 
G 4 HOH B 65 310 150 HOH HOH . 
G 4 HOH B 66 311 152 HOH HOH . 
G 4 HOH B 67 312 154 HOH HOH . 
G 4 HOH B 68 313 156 HOH HOH . 
G 4 HOH B 69 314 157 HOH HOH . 
G 4 HOH B 70 315 159 HOH HOH . 
G 4 HOH B 71 316 161 HOH HOH . 
G 4 HOH B 72 317 163 HOH HOH . 
G 4 HOH B 73 318 165 HOH HOH . 
H 4 HOH P 1 12 12 HOH HOH . 
H 4 HOH P 2 14 14 HOH HOH . 
H 4 HOH P 3 15 15 HOH HOH . 
H 4 HOH P 4 16 16 HOH HOH . 
H 4 HOH P 5 17 17 HOH HOH . 
H 4 HOH P 6 18 18 HOH HOH . 
H 4 HOH P 7 19 19 HOH HOH . 
H 4 HOH P 8 20 20 HOH HOH . 
H 4 HOH P 9 21 21 HOH HOH . 
H 4 HOH P 10 22 22 HOH HOH . 
H 4 HOH P 11 24 24 HOH HOH . 
H 4 HOH P 12 25 25 HOH HOH . 
H 4 HOH P 13 26 26 HOH HOH . 
H 4 HOH P 14 27 27 HOH HOH . 
H 4 HOH P 15 28 28 HOH HOH . 
I 4 HOH Q 1 1 1 HOH HOH . 
I 4 HOH Q 2 3 3 HOH HOH . 
I 4 HOH Q 3 4 4 HOH HOH . 
I 4 HOH Q 4 5 5 HOH HOH . 
I 4 HOH Q 5 6 6 HOH HOH . 
I 4 HOH Q 6 7 7 HOH HOH . 
I 4 HOH Q 7 8 8 HOH HOH . 
I 4 HOH Q 8 9 9 HOH HOH . 
I 4 HOH Q 9 10 10 HOH HOH . 
I 4 HOH Q 10 11 11 HOH HOH . 
I 4 HOH Q 11 13 13 HOH HOH . 
I 4 HOH Q 12 133 133 HOH HOH . 
I 4 HOH Q 13 167 167 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PPI . . . E 3 52.924 -21.155 11.066 1 32.79 ? C1 PPI 247 A 1 
HETATM 2 C C2 PPI . . . E 3 53.053 -20.819 12.588 1 30.13 ? C2 PPI 247 A 1 
HETATM 3 C C3 PPI . . . E 3 52.92 -22.184 13.366 1 31.5 ? C3 PPI 247 A 1 
HETATM 4 O O1 PPI . . . E 3 52.441 -22.25 10.664 1 31.27 ? O1 PPI 247 A 1 
HETATM 5 O O2 PPI . . . E 3 53.252 -20.253 10.267 1 31.32 ? O2 PPI 247 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           840 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           5 
#