data_3NKX # _model_server_result.job_id cRuSjtnZ9Z6PWSJwwB2hqw _model_server_result.datetime_utc '2024-11-05 10:37:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":247}' # _entry.id 3NKX # _exptl.entry_id 3NKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 74.079 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROPANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NKX _cell.length_a 72.41 _cell.length_b 83.85 _cell.length_c 111.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C THR 4 P THR 258 1_555 C N SEP 5 P SEP 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 C C SEP 5 P SEP 259 1_555 C N THR 6 P THR 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale3 D C THR 4 Q THR 258 1_555 D N SEP 5 Q SEP 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 D C SEP 5 Q SEP 259 1_555 D N THR 6 Q THR 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C3 H6 O2' _chem_comp.formula_weight 74.079 _chem_comp.id PPI _chem_comp.mon_nstd_flag . _chem_comp.name 'PROPANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PPI sing 260 n n C1 O1 PPI doub 261 n n C1 O2 PPI sing 262 n n C2 C3 PPI sing 263 n n C2 H21 PPI sing 264 n n C2 H22 PPI sing 265 n n C3 H31 PPI sing 266 n n C3 H32 PPI sing 267 n n C3 H33 PPI sing 268 n n O2 HO2 PPI sing 269 n n # _atom_sites.entry_id 3NKX _atom_sites.fract_transf_matrix[1][1] 0.01381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PPI A 1 247 247 PPI PPI . F 4 HOH A 1 246 23 HOH HOH . F 4 HOH A 2 248 32 HOH HOH . F 4 HOH A 3 249 34 HOH HOH . F 4 HOH A 4 250 37 HOH HOH . F 4 HOH A 5 251 39 HOH HOH . F 4 HOH A 6 252 41 HOH HOH . F 4 HOH A 7 253 43 HOH HOH . F 4 HOH A 8 254 45 HOH HOH . F 4 HOH A 9 255 47 HOH HOH . F 4 HOH A 10 256 49 HOH HOH . F 4 HOH A 11 257 51 HOH HOH . F 4 HOH A 12 258 53 HOH HOH . F 4 HOH A 13 259 55 HOH HOH . F 4 HOH A 14 260 57 HOH HOH . F 4 HOH A 15 261 60 HOH HOH . F 4 HOH A 16 262 62 HOH HOH . F 4 HOH A 17 263 64 HOH HOH . F 4 HOH A 18 264 66 HOH HOH . F 4 HOH A 19 265 69 HOH HOH . F 4 HOH A 20 266 71 HOH HOH . F 4 HOH A 21 267 73 HOH HOH . F 4 HOH A 22 268 76 HOH HOH . F 4 HOH A 23 269 78 HOH HOH . F 4 HOH A 24 270 80 HOH HOH . F 4 HOH A 25 271 82 HOH HOH . F 4 HOH A 26 272 84 HOH HOH . F 4 HOH A 27 273 86 HOH HOH . F 4 HOH A 28 274 88 HOH HOH . F 4 HOH A 29 275 90 HOH HOH . F 4 HOH A 30 276 92 HOH HOH . F 4 HOH A 31 277 94 HOH HOH . F 4 HOH A 32 278 96 HOH HOH . F 4 HOH A 33 279 98 HOH HOH . F 4 HOH A 34 280 100 HOH HOH . F 4 HOH A 35 281 102 HOH HOH . F 4 HOH A 36 282 104 HOH HOH . F 4 HOH A 37 283 106 HOH HOH . F 4 HOH A 38 284 108 HOH HOH . F 4 HOH A 39 285 110 HOH HOH . F 4 HOH A 40 286 112 HOH HOH . F 4 HOH A 41 287 114 HOH HOH . F 4 HOH A 42 288 116 HOH HOH . F 4 HOH A 43 289 118 HOH HOH . F 4 HOH A 44 290 120 HOH HOH . F 4 HOH A 45 291 122 HOH HOH . F 4 HOH A 46 292 124 HOH HOH . F 4 HOH A 47 293 126 HOH HOH . F 4 HOH A 48 294 128 HOH HOH . F 4 HOH A 49 295 130 HOH HOH . F 4 HOH A 50 296 132 HOH HOH . F 4 HOH A 51 297 134 HOH HOH . F 4 HOH A 52 298 136 HOH HOH . F 4 HOH A 53 299 138 HOH HOH . F 4 HOH A 54 300 140 HOH HOH . F 4 HOH A 55 301 142 HOH HOH . F 4 HOH A 56 302 144 HOH HOH . F 4 HOH A 57 303 146 HOH HOH . F 4 HOH A 58 304 149 HOH HOH . F 4 HOH A 59 305 151 HOH HOH . F 4 HOH A 60 306 153 HOH HOH . F 4 HOH A 61 307 155 HOH HOH . F 4 HOH A 62 308 158 HOH HOH . F 4 HOH A 63 309 160 HOH HOH . F 4 HOH A 64 310 162 HOH HOH . F 4 HOH A 65 311 164 HOH HOH . F 4 HOH A 66 312 166 HOH HOH . F 4 HOH A 67 313 168 HOH HOH . F 4 HOH A 68 314 169 HOH HOH . F 4 HOH A 69 315 170 HOH HOH . F 4 HOH A 70 316 171 HOH HOH . F 4 HOH A 71 317 172 HOH HOH . F 4 HOH A 72 318 173 HOH HOH . F 4 HOH A 73 319 174 HOH HOH . F 4 HOH A 74 320 175 HOH HOH . F 4 HOH A 75 321 176 HOH HOH . F 4 HOH A 76 322 177 HOH HOH . F 4 HOH A 77 323 178 HOH HOH . F 4 HOH A 78 324 179 HOH HOH . F 4 HOH A 79 325 180 HOH HOH . F 4 HOH A 80 326 181 HOH HOH . F 4 HOH A 81 327 182 HOH HOH . F 4 HOH A 82 328 183 HOH HOH . G 4 HOH B 1 246 2 HOH HOH . G 4 HOH B 2 247 29 HOH HOH . G 4 HOH B 3 248 30 HOH HOH . G 4 HOH B 4 249 31 HOH HOH . G 4 HOH B 5 250 33 HOH HOH . G 4 HOH B 6 251 35 HOH HOH . G 4 HOH B 7 252 36 HOH HOH . G 4 HOH B 8 253 38 HOH HOH . G 4 HOH B 9 254 40 HOH HOH . G 4 HOH B 10 255 42 HOH HOH . G 4 HOH B 11 256 44 HOH HOH . G 4 HOH B 12 257 46 HOH HOH . G 4 HOH B 13 258 48 HOH HOH . G 4 HOH B 14 259 50 HOH HOH . G 4 HOH B 15 260 52 HOH HOH . G 4 HOH B 16 261 54 HOH HOH . G 4 HOH B 17 262 56 HOH HOH . G 4 HOH B 18 263 58 HOH HOH . G 4 HOH B 19 264 59 HOH HOH . G 4 HOH B 20 265 61 HOH HOH . G 4 HOH B 21 266 63 HOH HOH . G 4 HOH B 22 267 65 HOH HOH . G 4 HOH B 23 268 67 HOH HOH . G 4 HOH B 24 269 68 HOH HOH . G 4 HOH B 25 270 70 HOH HOH . G 4 HOH B 26 271 72 HOH HOH . G 4 HOH B 27 272 74 HOH HOH . G 4 HOH B 28 273 75 HOH HOH . G 4 HOH B 29 274 77 HOH HOH . G 4 HOH B 30 275 79 HOH HOH . G 4 HOH B 31 276 81 HOH HOH . G 4 HOH B 32 277 83 HOH HOH . G 4 HOH B 33 278 85 HOH HOH . G 4 HOH B 34 279 87 HOH HOH . G 4 HOH B 35 280 89 HOH HOH . G 4 HOH B 36 281 91 HOH HOH . G 4 HOH B 37 282 93 HOH HOH . G 4 HOH B 38 283 95 HOH HOH . G 4 HOH B 39 284 97 HOH HOH . G 4 HOH B 40 285 99 HOH HOH . G 4 HOH B 41 286 101 HOH HOH . G 4 HOH B 42 287 103 HOH HOH . G 4 HOH B 43 288 105 HOH HOH . G 4 HOH B 44 289 107 HOH HOH . G 4 HOH B 45 290 109 HOH HOH . G 4 HOH B 46 291 111 HOH HOH . G 4 HOH B 47 292 113 HOH HOH . G 4 HOH B 48 293 115 HOH HOH . G 4 HOH B 49 294 117 HOH HOH . G 4 HOH B 50 295 119 HOH HOH . G 4 HOH B 51 296 121 HOH HOH . G 4 HOH B 52 297 123 HOH HOH . G 4 HOH B 53 298 125 HOH HOH . G 4 HOH B 54 299 127 HOH HOH . G 4 HOH B 55 300 129 HOH HOH . G 4 HOH B 56 301 131 HOH HOH . G 4 HOH B 57 302 135 HOH HOH . G 4 HOH B 58 303 137 HOH HOH . G 4 HOH B 59 304 139 HOH HOH . G 4 HOH B 60 305 141 HOH HOH . G 4 HOH B 61 306 143 HOH HOH . G 4 HOH B 62 307 145 HOH HOH . G 4 HOH B 63 308 147 HOH HOH . G 4 HOH B 64 309 148 HOH HOH . G 4 HOH B 65 310 150 HOH HOH . G 4 HOH B 66 311 152 HOH HOH . G 4 HOH B 67 312 154 HOH HOH . G 4 HOH B 68 313 156 HOH HOH . G 4 HOH B 69 314 157 HOH HOH . G 4 HOH B 70 315 159 HOH HOH . G 4 HOH B 71 316 161 HOH HOH . G 4 HOH B 72 317 163 HOH HOH . G 4 HOH B 73 318 165 HOH HOH . H 4 HOH P 1 12 12 HOH HOH . H 4 HOH P 2 14 14 HOH HOH . H 4 HOH P 3 15 15 HOH HOH . H 4 HOH P 4 16 16 HOH HOH . H 4 HOH P 5 17 17 HOH HOH . H 4 HOH P 6 18 18 HOH HOH . H 4 HOH P 7 19 19 HOH HOH . H 4 HOH P 8 20 20 HOH HOH . H 4 HOH P 9 21 21 HOH HOH . H 4 HOH P 10 22 22 HOH HOH . H 4 HOH P 11 24 24 HOH HOH . H 4 HOH P 12 25 25 HOH HOH . H 4 HOH P 13 26 26 HOH HOH . H 4 HOH P 14 27 27 HOH HOH . H 4 HOH P 15 28 28 HOH HOH . I 4 HOH Q 1 1 1 HOH HOH . I 4 HOH Q 2 3 3 HOH HOH . I 4 HOH Q 3 4 4 HOH HOH . I 4 HOH Q 4 5 5 HOH HOH . I 4 HOH Q 5 6 6 HOH HOH . I 4 HOH Q 6 7 7 HOH HOH . I 4 HOH Q 7 8 8 HOH HOH . I 4 HOH Q 8 9 9 HOH HOH . I 4 HOH Q 9 10 10 HOH HOH . I 4 HOH Q 10 11 11 HOH HOH . I 4 HOH Q 11 13 13 HOH HOH . I 4 HOH Q 12 133 133 HOH HOH . I 4 HOH Q 13 167 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PPI . . . E 3 52.924 -21.155 11.066 1 32.79 ? C1 PPI 247 A 1 HETATM 2 C C2 PPI . . . E 3 53.053 -20.819 12.588 1 30.13 ? C2 PPI 247 A 1 HETATM 3 C C3 PPI . . . E 3 52.92 -22.184 13.366 1 31.5 ? C3 PPI 247 A 1 HETATM 4 O O1 PPI . . . E 3 52.441 -22.25 10.664 1 31.27 ? O1 PPI 247 A 1 HETATM 5 O O2 PPI . . . E 3 53.252 -20.253 10.267 1 31.32 ? O2 PPI 247 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #