data_3NKY # _model_server_result.job_id W_PDhRNhEKNdmaVt-_JfqQ _model_server_result.datetime_utc '2024-12-26 10:16:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3NKY # _exptl.entry_id 3NKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NKY _cell.length_a 93.53 _cell.length_b 93.53 _cell.length_c 121.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 115 A THR 115 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 C MG MG . A MG 501 1_555 D O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NKY _atom_sites.fract_transf_matrix[1][1] 0.010692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 500 500 MG MG . C 2 MG A 1 501 501 MG MG . D 3 HOH A 1 477 1 HOH HOH . D 3 HOH A 2 478 2 HOH HOH . D 3 HOH A 3 479 3 HOH HOH . D 3 HOH A 4 480 4 HOH HOH . D 3 HOH A 5 481 6 HOH HOH . D 3 HOH A 6 482 7 HOH HOH . D 3 HOH A 7 483 8 HOH HOH . D 3 HOH A 8 484 9 HOH HOH . D 3 HOH A 9 485 10 HOH HOH . D 3 HOH A 10 486 12 HOH HOH . D 3 HOH A 11 487 15 HOH HOH . D 3 HOH A 12 488 17 HOH HOH . D 3 HOH A 13 489 19 HOH HOH . D 3 HOH A 14 490 20 HOH HOH . D 3 HOH A 15 491 22 HOH HOH . D 3 HOH A 16 492 29 HOH HOH . D 3 HOH A 17 493 34 HOH HOH . D 3 HOH A 18 494 35 HOH HOH . D 3 HOH A 19 495 37 HOH HOH . D 3 HOH A 20 496 41 HOH HOH . D 3 HOH A 21 497 48 HOH HOH . D 3 HOH A 22 498 52 HOH HOH . D 3 HOH A 23 499 53 HOH HOH . D 3 HOH A 24 502 56 HOH HOH . D 3 HOH A 25 503 61 HOH HOH . D 3 HOH A 26 504 65 HOH HOH . D 3 HOH A 27 505 67 HOH HOH . D 3 HOH A 28 506 68 HOH HOH . D 3 HOH A 29 507 73 HOH HOH . D 3 HOH A 30 508 74 HOH HOH . D 3 HOH A 31 509 79 HOH HOH . D 3 HOH A 32 510 80 HOH HOH . D 3 HOH A 33 511 81 HOH HOH . D 3 HOH A 34 512 82 HOH HOH . D 3 HOH A 35 513 85 HOH HOH . D 3 HOH A 36 514 86 HOH HOH . D 3 HOH A 37 515 87 HOH HOH . D 3 HOH A 38 516 88 HOH HOH . D 3 HOH A 39 517 91 HOH HOH . D 3 HOH A 40 518 106 HOH HOH . D 3 HOH A 41 519 114 HOH HOH . D 3 HOH A 42 520 150 HOH HOH . D 3 HOH A 43 521 157 HOH HOH . D 3 HOH A 44 522 162 HOH HOH . D 3 HOH A 45 523 169 HOH HOH . D 3 HOH A 46 524 179 HOH HOH . D 3 HOH A 47 525 181 HOH HOH . D 3 HOH A 48 526 200 HOH HOH . D 3 HOH A 49 527 201 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 32.201 _atom_site.Cartn_y 35.045 _atom_site.Cartn_z 23.669 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #