data_3NKZ
#
_model_server_result.job_id            9t3uDQ5zdBvo-GTz8hvm3Q 
_model_server_result.datetime_utc      '2025-01-10 06:52:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nkz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":122}' 
#
_entry.id    3NKZ 
#
_exptl.entry_id    3NKZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.226 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TETRAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NKZ 
_cell.length_a            66.798 
_cell.length_b            66.758 
_cell.length_c            137.649 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NKZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,B,E,F,G,K,L 2 1 
C,D,H,I,J,M,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C MSE 4 A MSE 1 1_555 A N GLU 5 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C GLN 23 A GLN 20 1_555 A N MSE 24 A MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 A C MSE 24 A MSE 21 1_555 A N LEU 25 A LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C GLU 40 A GLU 37 1_555 A N MSE 41 A MSE 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 A C MSE 41 A MSE 38 1_555 A N THR 42 A THR 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 A C LEU 61 A LEU 58 1_555 A N MSE 62 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 A C MSE 62 A MSE 59 1_555 A N LEU 63 A LEU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 B C MSE 4 B MSE 1 1_555 B N GLU 5 B GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale11 B C GLN 23 B GLN 20 1_555 B N MSE 24 B MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 B C MSE 24 B MSE 21 1_555 B N LEU 25 B LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale13 B C GLU 40 B GLU 37 1_555 B N MSE 41 B MSE 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale14 B C MSE 41 B MSE 38 1_555 B N THR 42 B THR 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale15 B C LEU 61 B LEU 58 1_555 B N MSE 62 B MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 B C MSE 62 B MSE 59 1_555 B N LEU 63 B LEU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale17 C C ALA 3 C ALA 0 1_555 C N MSE 4 C MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 C C MSE 4 C MSE 1 1_555 C N GLU 5 C GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale19 C C GLN 23 C GLN 20 1_555 C N MSE 24 C MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale20 C C MSE 24 C MSE 21 1_555 C N LEU 25 C LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale21 C C GLU 40 C GLU 37 1_555 C N MSE 41 C MSE 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale22 C C MSE 41 C MSE 38 1_555 C N THR 42 C THR 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale23 C C LEU 61 C LEU 58 1_555 C N MSE 62 C MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale24 C C MSE 62 C MSE 59 1_555 C N LEU 63 C LEU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale25 D C ALA 3 D ALA 0 1_555 D N MSE 4 D MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale26 D C MSE 4 D MSE 1 1_555 D N GLU 5 D GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale27 D C GLN 23 D GLN 20 1_555 D N MSE 24 D MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale28 D C MSE 24 D MSE 21 1_555 D N LEU 25 D LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale29 D C GLU 40 D GLU 37 1_555 D N MSE 41 D MSE 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale30 D C MSE 41 D MSE 38 1_555 D N THR 42 D THR 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale31 D C LEU 61 D LEU 58 1_555 D N MSE 62 D MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale32 D C MSE 62 D MSE 59 1_555 D N LEU 63 D LEU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
#
_chem_comp.formula           'C8 H18 O5' 
_chem_comp.formula_weight    194.226 
_chem_comp.id                PG4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TETRAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 PG4 sing 237 n n 
O1 HO1 PG4 sing 238 n n 
C1 C2 PG4 sing 239 n n 
C1 H11 PG4 sing 240 n n 
C1 H12 PG4 sing 241 n n 
C2 O2 PG4 sing 242 n n 
C2 H21 PG4 sing 243 n n 
C2 H22 PG4 sing 244 n n 
O2 C3 PG4 sing 245 n n 
C3 C4 PG4 sing 246 n n 
C3 H31 PG4 sing 247 n n 
C3 H32 PG4 sing 248 n n 
C4 O3 PG4 sing 249 n n 
C4 H41 PG4 sing 250 n n 
C4 H42 PG4 sing 251 n n 
O3 C5 PG4 sing 252 n n 
C5 C6 PG4 sing 253 n n 
C5 H51 PG4 sing 254 n n 
C5 H52 PG4 sing 255 n n 
C6 O4 PG4 sing 256 n n 
C6 H61 PG4 sing 257 n n 
C6 H62 PG4 sing 258 n n 
O4 C7 PG4 sing 259 n n 
C7 C8 PG4 sing 260 n n 
C7 H71 PG4 sing 261 n n 
C7 H72 PG4 sing 262 n n 
C8 O5 PG4 sing 263 n n 
C8 H81 PG4 sing 264 n n 
C8 H82 PG4 sing 265 n n 
O5 HO5 PG4 sing 266 n n 
#
_atom_sites.entry_id                     3NKZ 
_atom_sites.fract_transf_matrix[1][1]    0.014971 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014979 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007265 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 121 2 SO4 SO4 . 
F 3 PG4 A 1 122 2 PG4 PG4 . 
G 2 SO4 B 1 121 1 SO4 SO4 . 
H 2 SO4 C 1 121 3 SO4 SO4 . 
I 3 PG4 C 1 122 1 PG4 PG4 . 
J 2 SO4 D 1 121 4 SO4 SO4 . 
K 4 HOH A 1 123 5 HOH HOH . 
K 4 HOH A 2 124 6 HOH HOH . 
K 4 HOH A 3 125 7 HOH HOH . 
K 4 HOH A 4 126 8 HOH HOH . 
K 4 HOH A 5 127 9 HOH HOH . 
K 4 HOH A 6 128 16 HOH HOH . 
K 4 HOH A 7 129 20 HOH HOH . 
K 4 HOH A 8 130 24 HOH HOH . 
K 4 HOH A 9 131 28 HOH HOH . 
K 4 HOH A 10 132 37 HOH HOH . 
K 4 HOH A 11 133 38 HOH HOH . 
K 4 HOH A 12 134 40 HOH HOH . 
K 4 HOH A 13 135 46 HOH HOH . 
K 4 HOH A 14 136 48 HOH HOH . 
K 4 HOH A 15 137 53 HOH HOH . 
K 4 HOH A 16 138 55 HOH HOH . 
K 4 HOH A 17 139 56 HOH HOH . 
K 4 HOH A 18 140 62 HOH HOH . 
K 4 HOH A 19 141 63 HOH HOH . 
K 4 HOH A 20 142 72 HOH HOH . 
K 4 HOH A 21 143 73 HOH HOH . 
K 4 HOH A 22 144 74 HOH HOH . 
K 4 HOH A 23 145 80 HOH HOH . 
K 4 HOH A 24 146 81 HOH HOH . 
K 4 HOH A 25 147 82 HOH HOH . 
K 4 HOH A 26 148 83 HOH HOH . 
L 4 HOH B 1 122 4 HOH HOH . 
L 4 HOH B 2 123 11 HOH HOH . 
L 4 HOH B 3 124 13 HOH HOH . 
L 4 HOH B 4 125 14 HOH HOH . 
L 4 HOH B 5 126 21 HOH HOH . 
L 4 HOH B 6 127 22 HOH HOH . 
L 4 HOH B 7 128 23 HOH HOH . 
L 4 HOH B 8 129 26 HOH HOH . 
L 4 HOH B 9 130 33 HOH HOH . 
L 4 HOH B 10 131 44 HOH HOH . 
L 4 HOH B 11 132 47 HOH HOH . 
L 4 HOH B 12 133 52 HOH HOH . 
L 4 HOH B 13 134 61 HOH HOH . 
L 4 HOH B 14 135 75 HOH HOH . 
L 4 HOH B 15 136 76 HOH HOH . 
L 4 HOH B 16 137 78 HOH HOH . 
L 4 HOH B 17 138 2 HOH HOH . 
M 4 HOH C 1 123 1 HOH HOH . 
M 4 HOH C 2 125 3 HOH HOH . 
M 4 HOH C 3 126 12 HOH HOH . 
M 4 HOH C 4 127 19 HOH HOH . 
M 4 HOH C 5 128 29 HOH HOH . 
M 4 HOH C 6 129 31 HOH HOH . 
M 4 HOH C 7 130 32 HOH HOH . 
M 4 HOH C 8 131 34 HOH HOH . 
M 4 HOH C 9 132 35 HOH HOH . 
M 4 HOH C 10 133 39 HOH HOH . 
M 4 HOH C 11 134 42 HOH HOH . 
M 4 HOH C 12 135 43 HOH HOH . 
M 4 HOH C 13 136 45 HOH HOH . 
M 4 HOH C 14 137 51 HOH HOH . 
M 4 HOH C 15 138 54 HOH HOH . 
M 4 HOH C 16 139 57 HOH HOH . 
M 4 HOH C 17 140 60 HOH HOH . 
M 4 HOH C 18 141 64 HOH HOH . 
M 4 HOH C 19 142 66 HOH HOH . 
M 4 HOH C 20 143 67 HOH HOH . 
M 4 HOH C 21 144 69 HOH HOH . 
M 4 HOH C 22 145 70 HOH HOH . 
M 4 HOH C 23 146 77 HOH HOH . 
M 4 HOH C 24 147 84 HOH HOH . 
M 4 HOH C 25 148 85 HOH HOH . 
M 4 HOH C 26 149 86 HOH HOH . 
N 4 HOH D 1 122 10 HOH HOH . 
N 4 HOH D 2 123 15 HOH HOH . 
N 4 HOH D 3 124 17 HOH HOH . 
N 4 HOH D 4 125 18 HOH HOH . 
N 4 HOH D 5 126 25 HOH HOH . 
N 4 HOH D 6 127 27 HOH HOH . 
N 4 HOH D 7 128 30 HOH HOH . 
N 4 HOH D 8 129 36 HOH HOH . 
N 4 HOH D 9 130 41 HOH HOH . 
N 4 HOH D 10 131 49 HOH HOH . 
N 4 HOH D 11 132 50 HOH HOH . 
N 4 HOH D 12 133 58 HOH HOH . 
N 4 HOH D 13 134 59 HOH HOH . 
N 4 HOH D 14 135 65 HOH HOH . 
N 4 HOH D 15 136 68 HOH HOH . 
N 4 HOH D 16 137 71 HOH HOH . 
N 4 HOH D 17 138 79 HOH HOH . 
N 4 HOH D 18 139 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PG4 . . . I 3 4.423 -15.63 1.52 1 50.29 ? O1 PG4 122 C 1 
HETATM 2 C C1 PG4 . . . I 3 4.768 -14.297 1.834 1 53.25 ? C1 PG4 122 C 1 
HETATM 3 C C2 PG4 . . . I 3 6.236 -14.017 1.422 1 40.48 ? C2 PG4 122 C 1 
HETATM 4 O O2 PG4 . . . I 3 7.118 -14.554 2.381 1 44.26 ? O2 PG4 122 C 1 
HETATM 5 C C3 PG4 . . . I 3 8.069 -15.521 1.978 1 46.45 ? C3 PG4 122 C 1 
HETATM 6 C C4 PG4 . . . I 3 9.451 -14.849 1.778 1 45.89 ? C4 PG4 122 C 1 
HETATM 7 O O3 PG4 . . . I 3 10.25 -15.652 0.918 1 52.58 ? O3 PG4 122 C 1 
HETATM 8 C C5 PG4 . . . I 3 10.165 -15.488 -0.5 1 50.32 ? C5 PG4 122 C 1 
HETATM 9 C C6 PG4 . . . I 3 9.895 -16.856 -1.18 1 52.69 ? C6 PG4 122 C 1 
HETATM 10 O O4 PG4 . . . I 3 9.543 -16.69 -2.551 1 54.78 ? O4 PG4 122 C 1 
HETATM 11 C C7 PG4 . . . I 3 9.335 -17.838 -3.373 1 56.16 ? C7 PG4 122 C 1 
HETATM 12 C C8 PG4 . . . I 3 7.952 -17.783 -4.054 1 60.49 ? C8 PG4 122 C 1 
HETATM 13 O O5 PG4 . . . I 3 7.836 -18.825 -4.996 1 62.54 ? O5 PG4 122 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           13 
#