data_3NL9 # _model_server_result.job_id e_3YhtU8p-HqYfbL835gIg _model_server_result.datetime_utc '2024-10-20 13:05:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 3NL9 # _exptl.entry_id 3NL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.81 _cell.angle_gamma 90 _cell.entry_id 3NL9 _cell.length_a 52.088 _cell.length_b 69.043 _cell.length_c 50.208 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.653772 0 46.614161 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 105 A ILE 104 1_555 A N MSE 106 A MSE 105 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C ILE 105 A ILE 104 1_555 A N MSE 106 A MSE 105 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C MSE 106 A MSE 105 1_555 A N GLY 107 A GLY 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C ASN 127 A ASN 126 1_555 A N MSE 128 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C MSE 128 A MSE 127 1_555 A N ALA 129 A ALA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C VAL 146 A VAL 145 1_555 A N MSE 147 A MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C MSE 147 A MSE 146 1_555 A N LYS 148 A LYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C GLN 166 A GLN 165 1_555 A N MSE 167 A MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C MSE 167 A MSE 166 1_555 A N LYS 168 A LYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 3NL9 _atom_sites.fract_transf_matrix[1][1] 0.019198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007682 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 201 EDO EDO . C 2 EDO A 1 202 202 EDO EDO . D 3 HOH A 1 203 203 HOH HOH . D 3 HOH A 2 204 204 HOH HOH . D 3 HOH A 3 205 205 HOH HOH . D 3 HOH A 4 206 206 HOH HOH . D 3 HOH A 5 207 207 HOH HOH . D 3 HOH A 6 208 208 HOH HOH . D 3 HOH A 7 209 209 HOH HOH . D 3 HOH A 8 210 210 HOH HOH . D 3 HOH A 9 211 211 HOH HOH . D 3 HOH A 10 212 212 HOH HOH . D 3 HOH A 11 213 213 HOH HOH . D 3 HOH A 12 214 214 HOH HOH . D 3 HOH A 13 215 215 HOH HOH . D 3 HOH A 14 216 216 HOH HOH . D 3 HOH A 15 217 217 HOH HOH . D 3 HOH A 16 218 218 HOH HOH . D 3 HOH A 17 219 219 HOH HOH . D 3 HOH A 18 220 220 HOH HOH . D 3 HOH A 19 221 221 HOH HOH . D 3 HOH A 20 222 222 HOH HOH . D 3 HOH A 21 223 223 HOH HOH . D 3 HOH A 22 224 224 HOH HOH . D 3 HOH A 23 225 225 HOH HOH . D 3 HOH A 24 226 226 HOH HOH . D 3 HOH A 25 227 227 HOH HOH . D 3 HOH A 26 228 228 HOH HOH . D 3 HOH A 27 229 229 HOH HOH . D 3 HOH A 28 230 230 HOH HOH . D 3 HOH A 29 231 231 HOH HOH . D 3 HOH A 30 232 232 HOH HOH . D 3 HOH A 31 233 233 HOH HOH . D 3 HOH A 32 234 234 HOH HOH . D 3 HOH A 33 235 235 HOH HOH . D 3 HOH A 34 236 236 HOH HOH . D 3 HOH A 35 237 237 HOH HOH . D 3 HOH A 36 238 238 HOH HOH . D 3 HOH A 37 239 239 HOH HOH . D 3 HOH A 38 240 240 HOH HOH . D 3 HOH A 39 241 241 HOH HOH . D 3 HOH A 40 242 242 HOH HOH . D 3 HOH A 41 243 243 HOH HOH . D 3 HOH A 42 244 244 HOH HOH . D 3 HOH A 43 245 245 HOH HOH . D 3 HOH A 44 246 246 HOH HOH . D 3 HOH A 45 247 247 HOH HOH . D 3 HOH A 46 248 248 HOH HOH . D 3 HOH A 47 249 249 HOH HOH . D 3 HOH A 48 250 250 HOH HOH . D 3 HOH A 49 251 251 HOH HOH . D 3 HOH A 50 252 252 HOH HOH . D 3 HOH A 51 253 253 HOH HOH . D 3 HOH A 52 254 254 HOH HOH . D 3 HOH A 53 255 255 HOH HOH . D 3 HOH A 54 256 256 HOH HOH . D 3 HOH A 55 257 257 HOH HOH . D 3 HOH A 56 258 258 HOH HOH . D 3 HOH A 57 259 259 HOH HOH . D 3 HOH A 58 260 260 HOH HOH . D 3 HOH A 59 261 261 HOH HOH . D 3 HOH A 60 262 262 HOH HOH . D 3 HOH A 61 263 263 HOH HOH . D 3 HOH A 62 264 264 HOH HOH . D 3 HOH A 63 265 265 HOH HOH . D 3 HOH A 64 266 266 HOH HOH . D 3 HOH A 65 267 267 HOH HOH . D 3 HOH A 66 268 268 HOH HOH . D 3 HOH A 67 269 269 HOH HOH . D 3 HOH A 68 270 270 HOH HOH . D 3 HOH A 69 271 271 HOH HOH . D 3 HOH A 70 272 272 HOH HOH . D 3 HOH A 71 273 273 HOH HOH . D 3 HOH A 72 274 274 HOH HOH . D 3 HOH A 73 275 275 HOH HOH . D 3 HOH A 74 276 276 HOH HOH . D 3 HOH A 75 277 277 HOH HOH . D 3 HOH A 76 278 278 HOH HOH . D 3 HOH A 77 279 279 HOH HOH . D 3 HOH A 78 280 280 HOH HOH . D 3 HOH A 79 281 281 HOH HOH . D 3 HOH A 80 282 282 HOH HOH . D 3 HOH A 81 283 283 HOH HOH . D 3 HOH A 82 284 284 HOH HOH . D 3 HOH A 83 285 285 HOH HOH . D 3 HOH A 84 286 286 HOH HOH . D 3 HOH A 85 287 287 HOH HOH . D 3 HOH A 86 288 288 HOH HOH . D 3 HOH A 87 289 289 HOH HOH . D 3 HOH A 88 290 290 HOH HOH . D 3 HOH A 89 291 291 HOH HOH . D 3 HOH A 90 292 292 HOH HOH . D 3 HOH A 91 293 293 HOH HOH . D 3 HOH A 92 294 294 HOH HOH . D 3 HOH A 93 295 295 HOH HOH . D 3 HOH A 94 296 296 HOH HOH . D 3 HOH A 95 297 297 HOH HOH . D 3 HOH A 96 298 298 HOH HOH . D 3 HOH A 97 299 299 HOH HOH . D 3 HOH A 98 300 300 HOH HOH . D 3 HOH A 99 301 301 HOH HOH . D 3 HOH A 100 302 302 HOH HOH . D 3 HOH A 101 303 303 HOH HOH . D 3 HOH A 102 304 304 HOH HOH . D 3 HOH A 103 305 305 HOH HOH . D 3 HOH A 104 306 306 HOH HOH . D 3 HOH A 105 307 307 HOH HOH . D 3 HOH A 106 308 308 HOH HOH . D 3 HOH A 107 309 309 HOH HOH . D 3 HOH A 108 310 310 HOH HOH . D 3 HOH A 109 311 311 HOH HOH . D 3 HOH A 110 312 312 HOH HOH . D 3 HOH A 111 313 313 HOH HOH . D 3 HOH A 112 314 314 HOH HOH . D 3 HOH A 113 315 315 HOH HOH . D 3 HOH A 114 316 316 HOH HOH . D 3 HOH A 115 317 317 HOH HOH . D 3 HOH A 116 318 318 HOH HOH . D 3 HOH A 117 319 319 HOH HOH . D 3 HOH A 118 320 320 HOH HOH . D 3 HOH A 119 321 321 HOH HOH . D 3 HOH A 120 322 322 HOH HOH . D 3 HOH A 121 323 323 HOH HOH . D 3 HOH A 122 324 324 HOH HOH . D 3 HOH A 123 325 325 HOH HOH . D 3 HOH A 124 326 326 HOH HOH . D 3 HOH A 125 327 327 HOH HOH . D 3 HOH A 126 328 328 HOH HOH . D 3 HOH A 127 329 329 HOH HOH . D 3 HOH A 128 330 330 HOH HOH . D 3 HOH A 129 331 331 HOH HOH . D 3 HOH A 130 332 332 HOH HOH . D 3 HOH A 131 333 333 HOH HOH . D 3 HOH A 132 334 334 HOH HOH . D 3 HOH A 133 335 335 HOH HOH . D 3 HOH A 134 336 336 HOH HOH . D 3 HOH A 135 337 337 HOH HOH . D 3 HOH A 136 338 338 HOH HOH . D 3 HOH A 137 339 339 HOH HOH . D 3 HOH A 138 340 340 HOH HOH . D 3 HOH A 139 341 341 HOH HOH . D 3 HOH A 140 342 342 HOH HOH . D 3 HOH A 141 343 343 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 1.815 16.182 42.208 1 37.67 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . C 2 2.715 16.617 41.182 1 32.67 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . C 2 2.299 14.871 42.831 1 37.9 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . C 2 3.714 14.919 43.052 1 36.93 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #