data_3NLB # _model_server_result.job_id I4JFcIBg3nsIBiu6vWMS1g _model_server_result.datetime_utc '2024-12-08 11:49:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nlb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":298}' # _entry.id 3NLB # _exptl.entry_id 3NLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-methyl-5-[5-(1-methylethyl)-1H-benzimidazol-2-yl]-N-(1-methylpiperidin-4-yl)-1H-pyrazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.7 _cell.angle_gamma 90 _cell.entry_id 3NLB _cell.length_a 44.885 _cell.length_b 65.71 _cell.length_c 54.42 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N6 O' _chem_comp.formula_weight 380.487 _chem_comp.id 5BE _chem_comp.mon_nstd_flag . _chem_comp.name 3-methyl-5-[5-(1-methylethyl)-1H-benzimidazol-2-yl]-N-(1-methylpiperidin-4-yl)-1H-pyrazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C13 5BE sing 1 n n C1 N14 5BE sing 2 n n C2 C3 5BE sing 3 n y C2 N17 5BE doub 4 n y C2 N18 5BE sing 5 n y C3 C4 5BE doub 6 n y C3 N7 5BE sing 7 n y C4 C5 5BE sing 8 n y C4 C9 5BE sing 9 n n C5 N6 5BE doub 10 n y C5 C8 5BE sing 11 n n N6 N7 5BE sing 12 n y C9 O10 5BE doub 13 n n C9 N11 5BE sing 14 n n N11 C12 5BE sing 15 n n C12 C13 5BE sing 16 n n C12 C16 5BE sing 17 n n N14 C15 5BE sing 18 n n N14 C28 5BE sing 19 n n C15 C16 5BE sing 20 n n N17 C20 5BE sing 21 n y N18 C19 5BE sing 22 n y C19 C20 5BE doub 23 n y C19 C24 5BE sing 24 n y C20 C21 5BE sing 25 n y C21 C22 5BE doub 26 n y C22 C23 5BE sing 27 n y C22 C25 5BE sing 28 n n C23 C24 5BE doub 29 n y C25 C26 5BE sing 30 n n C25 C27 5BE sing 31 n n C1 H1 5BE sing 32 n n C1 H1A 5BE sing 33 n n N7 HN7 5BE sing 34 n n C8 H8 5BE sing 35 n n C8 H8A 5BE sing 36 n n C8 H8B 5BE sing 37 n n N11 HN11 5BE sing 38 n n C12 H12 5BE sing 39 n n C13 H13 5BE sing 40 n n C13 H13A 5BE sing 41 n n C15 H15 5BE sing 42 n n C15 H15A 5BE sing 43 n n C16 H16 5BE sing 44 n n C16 H16A 5BE sing 45 n n N18 HN18 5BE sing 46 n n C21 H21 5BE sing 47 n n C23 H23 5BE sing 48 n n C24 H24 5BE sing 49 n n C25 H25 5BE sing 50 n n C26 H26 5BE sing 51 n n C26 H26A 5BE sing 52 n n C26 H26B 5BE sing 53 n n C27 H27 5BE sing 54 n n C27 H27A 5BE sing 55 n n C27 H27B 5BE sing 56 n n C28 H28 5BE sing 57 n n C28 H28A 5BE sing 58 n n C28 H28B 5BE sing 59 n n # _atom_sites.entry_id 3NLB _atom_sites.fract_transf_matrix[1][1] 0.022279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00502 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5BE A 1 298 1 5BE 5BE . C 3 HOH A 1 299 1 HOH HOH . C 3 HOH A 2 300 2 HOH HOH . C 3 HOH A 3 301 3 HOH HOH . C 3 HOH A 4 302 4 HOH HOH . C 3 HOH A 5 303 5 HOH HOH . C 3 HOH A 6 304 6 HOH HOH . C 3 HOH A 7 305 7 HOH HOH . C 3 HOH A 8 306 8 HOH HOH . C 3 HOH A 9 307 9 HOH HOH . C 3 HOH A 10 308 10 HOH HOH . C 3 HOH A 11 309 11 HOH HOH . C 3 HOH A 12 310 12 HOH HOH . C 3 HOH A 13 311 13 HOH HOH . C 3 HOH A 14 312 14 HOH HOH . C 3 HOH A 15 313 15 HOH HOH . C 3 HOH A 16 314 16 HOH HOH . C 3 HOH A 17 315 17 HOH HOH . C 3 HOH A 18 316 18 HOH HOH . C 3 HOH A 19 317 20 HOH HOH . C 3 HOH A 20 318 21 HOH HOH . C 3 HOH A 21 319 22 HOH HOH . C 3 HOH A 22 320 23 HOH HOH . C 3 HOH A 23 321 24 HOH HOH . C 3 HOH A 24 322 25 HOH HOH . C 3 HOH A 25 323 26 HOH HOH . C 3 HOH A 26 324 27 HOH HOH . C 3 HOH A 27 325 28 HOH HOH . C 3 HOH A 28 326 29 HOH HOH . C 3 HOH A 29 327 30 HOH HOH . C 3 HOH A 30 328 31 HOH HOH . C 3 HOH A 31 329 32 HOH HOH . C 3 HOH A 32 330 33 HOH HOH . C 3 HOH A 33 331 34 HOH HOH . C 3 HOH A 34 332 35 HOH HOH . C 3 HOH A 35 333 36 HOH HOH . C 3 HOH A 36 334 38 HOH HOH . C 3 HOH A 37 335 39 HOH HOH . C 3 HOH A 38 336 40 HOH HOH . C 3 HOH A 39 337 41 HOH HOH . C 3 HOH A 40 338 42 HOH HOH . C 3 HOH A 41 339 43 HOH HOH . C 3 HOH A 42 340 44 HOH HOH . C 3 HOH A 43 341 46 HOH HOH . C 3 HOH A 44 342 47 HOH HOH . C 3 HOH A 45 343 48 HOH HOH . C 3 HOH A 46 344 49 HOH HOH . C 3 HOH A 47 345 50 HOH HOH . C 3 HOH A 48 346 51 HOH HOH . C 3 HOH A 49 347 52 HOH HOH . C 3 HOH A 50 348 53 HOH HOH . C 3 HOH A 51 349 55 HOH HOH . C 3 HOH A 52 350 56 HOH HOH . C 3 HOH A 53 351 57 HOH HOH . C 3 HOH A 54 352 58 HOH HOH . C 3 HOH A 55 353 59 HOH HOH . C 3 HOH A 56 354 61 HOH HOH . C 3 HOH A 57 355 62 HOH HOH . C 3 HOH A 58 356 64 HOH HOH . C 3 HOH A 59 357 65 HOH HOH . C 3 HOH A 60 358 66 HOH HOH . C 3 HOH A 61 359 67 HOH HOH . C 3 HOH A 62 360 68 HOH HOH . C 3 HOH A 63 361 69 HOH HOH . C 3 HOH A 64 362 70 HOH HOH . C 3 HOH A 65 363 71 HOH HOH . C 3 HOH A 66 364 72 HOH HOH . C 3 HOH A 67 365 73 HOH HOH . C 3 HOH A 68 366 74 HOH HOH . C 3 HOH A 69 367 75 HOH HOH . C 3 HOH A 70 368 76 HOH HOH . C 3 HOH A 71 369 78 HOH HOH . C 3 HOH A 72 370 80 HOH HOH . C 3 HOH A 73 371 82 HOH HOH . C 3 HOH A 74 372 84 HOH HOH . C 3 HOH A 75 373 85 HOH HOH . C 3 HOH A 76 374 86 HOH HOH . C 3 HOH A 77 375 87 HOH HOH . C 3 HOH A 78 376 88 HOH HOH . C 3 HOH A 79 377 89 HOH HOH . C 3 HOH A 80 378 90 HOH HOH . C 3 HOH A 81 379 91 HOH HOH . C 3 HOH A 82 380 92 HOH HOH . C 3 HOH A 83 381 93 HOH HOH . C 3 HOH A 84 382 94 HOH HOH . C 3 HOH A 85 383 95 HOH HOH . C 3 HOH A 86 384 96 HOH HOH . C 3 HOH A 87 385 97 HOH HOH . C 3 HOH A 88 386 99 HOH HOH . C 3 HOH A 89 387 100 HOH HOH . C 3 HOH A 90 388 101 HOH HOH . C 3 HOH A 91 389 102 HOH HOH . C 3 HOH A 92 390 104 HOH HOH . C 3 HOH A 93 391 105 HOH HOH . C 3 HOH A 94 392 106 HOH HOH . C 3 HOH A 95 393 107 HOH HOH . C 3 HOH A 96 394 108 HOH HOH . C 3 HOH A 97 395 109 HOH HOH . C 3 HOH A 98 396 110 HOH HOH . C 3 HOH A 99 397 111 HOH HOH . C 3 HOH A 100 398 114 HOH HOH . C 3 HOH A 101 399 115 HOH HOH . C 3 HOH A 102 400 116 HOH HOH . C 3 HOH A 103 401 117 HOH HOH . C 3 HOH A 104 402 118 HOH HOH . C 3 HOH A 105 403 119 HOH HOH . C 3 HOH A 106 404 120 HOH HOH . C 3 HOH A 107 405 122 HOH HOH . C 3 HOH A 108 406 123 HOH HOH . C 3 HOH A 109 407 124 HOH HOH . C 3 HOH A 110 408 125 HOH HOH . C 3 HOH A 111 409 126 HOH HOH . C 3 HOH A 112 410 127 HOH HOH . C 3 HOH A 113 411 128 HOH HOH . C 3 HOH A 114 412 129 HOH HOH . C 3 HOH A 115 413 130 HOH HOH . C 3 HOH A 116 414 131 HOH HOH . C 3 HOH A 117 415 132 HOH HOH . C 3 HOH A 118 416 133 HOH HOH . C 3 HOH A 119 417 134 HOH HOH . C 3 HOH A 120 418 135 HOH HOH . C 3 HOH A 121 419 136 HOH HOH . C 3 HOH A 122 420 137 HOH HOH . C 3 HOH A 123 421 138 HOH HOH . C 3 HOH A 124 422 139 HOH HOH . C 3 HOH A 125 423 140 HOH HOH . C 3 HOH A 126 424 141 HOH HOH . C 3 HOH A 127 425 142 HOH HOH . C 3 HOH A 128 426 143 HOH HOH . C 3 HOH A 129 427 144 HOH HOH . C 3 HOH A 130 428 145 HOH HOH . C 3 HOH A 131 429 146 HOH HOH . C 3 HOH A 132 430 147 HOH HOH . C 3 HOH A 133 431 148 HOH HOH . C 3 HOH A 134 432 149 HOH HOH . C 3 HOH A 135 433 150 HOH HOH . C 3 HOH A 136 434 151 HOH HOH . C 3 HOH A 137 435 152 HOH HOH . C 3 HOH A 138 436 153 HOH HOH . C 3 HOH A 139 437 154 HOH HOH . C 3 HOH A 140 438 155 HOH HOH . C 3 HOH A 141 439 156 HOH HOH . C 3 HOH A 142 440 157 HOH HOH . C 3 HOH A 143 441 158 HOH HOH . C 3 HOH A 144 442 159 HOH HOH . C 3 HOH A 145 443 160 HOH HOH . C 3 HOH A 146 444 161 HOH HOH . C 3 HOH A 147 445 162 HOH HOH . C 3 HOH A 148 446 163 HOH HOH . C 3 HOH A 149 447 164 HOH HOH . C 3 HOH A 150 448 165 HOH HOH . C 3 HOH A 151 449 166 HOH HOH . C 3 HOH A 152 450 167 HOH HOH . C 3 HOH A 153 451 168 HOH HOH . C 3 HOH A 154 452 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5BE . . . B 2 3.73 -6.951 14.055 1 27.58 ? C1 5BE 298 A 1 HETATM 2 C C2 5BE . . . B 2 2.351 -3.124 19.451 1 23.61 ? C2 5BE 298 A 1 HETATM 3 C C3 5BE . . . B 2 3.67 -2.662 19.327 1 25.71 ? C3 5BE 298 A 1 HETATM 4 C C4 5BE . . . B 2 4.707 -3.297 18.692 1 25.4 ? C4 5BE 298 A 1 HETATM 5 C C5 5BE . . . B 2 5.778 -2.43 18.888 1 26.73 ? C5 5BE 298 A 1 HETATM 6 N N6 5BE . . . B 2 5.383 -1.394 19.631 1 27.09 ? N6 5BE 298 A 1 HETATM 7 N N7 5BE . . . B 2 4.169 -1.534 19.911 1 26.43 ? N7 5BE 298 A 1 HETATM 8 C C8 5BE . . . B 2 7.213 -2.606 18.378 1 28.34 ? C8 5BE 298 A 1 HETATM 9 C C9 5BE . . . B 2 4.807 -4.565 17.818 1 25.52 ? C9 5BE 298 A 1 HETATM 10 O O10 5BE . . . B 2 5.905 -4.848 17.321 1 31.73 ? O10 5BE 298 A 1 HETATM 11 N N11 5BE . . . B 2 3.712 -5.226 17.5 1 30.15 ? N11 5BE 298 A 1 HETATM 12 C C12 5BE . . . B 2 3.748 -6.378 16.556 1 26.96 ? C12 5BE 298 A 1 HETATM 13 C C13 5BE . . . B 2 3.726 -5.837 15.1 1 31.68 ? C13 5BE 298 A 1 HETATM 14 N N14 5BE . . . B 2 2.536 -7.815 14.29 1 32.42 ? N14 5BE 298 A 1 HETATM 15 C C15 5BE . . . B 2 2.576 -8.438 15.631 1 26.84 ? C15 5BE 298 A 1 HETATM 16 C C16 5BE . . . B 2 2.549 -7.331 16.755 1 28.89 ? C16 5BE 298 A 1 HETATM 17 N N17 5BE . . . B 2 1.48 -2.46 20.203 1 24.13 ? N17 5BE 298 A 1 HETATM 18 N N18 5BE . . . B 2 1.774 -4.217 18.923 1 25.93 ? N18 5BE 298 A 1 HETATM 19 C C19 5BE . . . B 2 0.523 -4.25 19.38 1 26.36 ? C19 5BE 298 A 1 HETATM 20 C C20 5BE . . . B 2 0.352 -3.137 20.19 1 27.93 ? C20 5BE 298 A 1 HETATM 21 C C21 5BE . . . B 2 -0.852 -2.92 20.866 1 28.31 ? C21 5BE 298 A 1 HETATM 22 C C22 5BE . . . B 2 -1.912 -3.791 20.703 1 29.96 ? C22 5BE 298 A 1 HETATM 23 C C23 5BE . . . B 2 -1.765 -4.899 19.861 1 30.66 ? C23 5BE 298 A 1 HETATM 24 C C24 5BE . . . B 2 -0.551 -5.138 19.191 1 28.16 ? C24 5BE 298 A 1 HETATM 25 C C25 5BE . . . B 2 -3.22 -3.441 21.463 1 35.13 ? C25 5BE 298 A 1 HETATM 26 C C26 5BE . . . B 2 -3.326 -4.364 22.709 1 40.44 ? C26 5BE 298 A 1 HETATM 27 C C27 5BE . . . B 2 -4.491 -3.454 20.597 1 39.34 ? C27 5BE 298 A 1 HETATM 28 C C28 5BE . . . B 2 2.423 -8.908 13.261 1 28.43 ? C28 5BE 298 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #