data_3NLL # _model_server_result.job_id qLS40Yb1ELHznOkkKWGPzw _model_server_result.datetime_utc '2024-10-14 08:20:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":139}' # _entry.id 3NLL # _exptl.entry_id 3NLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NLL _cell.length_a 61.48 _cell.length_b 61.48 _cell.length_c 70.29 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3NLL _atom_sites.fract_transf_matrix[1][1] 0.016265 _atom_sites.fract_transf_matrix[1][2] 0.009391 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 139 139 FMN FMN . C 3 HOH A 1 144 144 HOH HOH . C 3 HOH A 2 145 145 HOH HOH . C 3 HOH A 3 146 146 HOH HOH . C 3 HOH A 4 147 147 HOH HOH . C 3 HOH A 5 149 149 HOH HOH . C 3 HOH A 6 152 152 HOH HOH . C 3 HOH A 7 155 155 HOH HOH . C 3 HOH A 8 156 156 HOH HOH . C 3 HOH A 9 158 158 HOH HOH . C 3 HOH A 10 160 160 HOH HOH . C 3 HOH A 11 161 161 HOH HOH . C 3 HOH A 12 162 162 HOH HOH . C 3 HOH A 13 163 163 HOH HOH . C 3 HOH A 14 164 164 HOH HOH . C 3 HOH A 15 166 166 HOH HOH . C 3 HOH A 16 168 168 HOH HOH . C 3 HOH A 17 169 169 HOH HOH . C 3 HOH A 18 172 172 HOH HOH . C 3 HOH A 19 173 173 HOH HOH . C 3 HOH A 20 174 174 HOH HOH . C 3 HOH A 21 175 175 HOH HOH . C 3 HOH A 22 176 176 HOH HOH . C 3 HOH A 23 179 179 HOH HOH . C 3 HOH A 24 180 180 HOH HOH . C 3 HOH A 25 185 185 HOH HOH . C 3 HOH A 26 186 186 HOH HOH . C 3 HOH A 27 187 187 HOH HOH . C 3 HOH A 28 189 189 HOH HOH . C 3 HOH A 29 190 190 HOH HOH . C 3 HOH A 30 191 191 HOH HOH . C 3 HOH A 31 194 194 HOH HOH . C 3 HOH A 32 196 196 HOH HOH . C 3 HOH A 33 198 198 HOH HOH . C 3 HOH A 34 201 201 HOH HOH . C 3 HOH A 35 206 206 HOH HOH . C 3 HOH A 36 207 207 HOH HOH . C 3 HOH A 37 208 208 HOH HOH . C 3 HOH A 38 210 210 HOH HOH . C 3 HOH A 39 211 211 HOH HOH . C 3 HOH A 40 212 212 HOH HOH . C 3 HOH A 41 213 213 HOH HOH . C 3 HOH A 42 214 214 HOH HOH . C 3 HOH A 43 216 216 HOH HOH . C 3 HOH A 44 217 217 HOH HOH . C 3 HOH A 45 218 218 HOH HOH . C 3 HOH A 46 219 219 HOH HOH . C 3 HOH A 47 222 222 HOH HOH . C 3 HOH A 48 223 223 HOH HOH . C 3 HOH A 49 224 224 HOH HOH . C 3 HOH A 50 225 225 HOH HOH . C 3 HOH A 51 226 226 HOH HOH . C 3 HOH A 52 229 229 HOH HOH . C 3 HOH A 53 231 231 HOH HOH . C 3 HOH A 54 232 232 HOH HOH . C 3 HOH A 55 233 233 HOH HOH . C 3 HOH A 56 234 234 HOH HOH . C 3 HOH A 57 235 235 HOH HOH . C 3 HOH A 58 236 236 HOH HOH . C 3 HOH A 59 237 237 HOH HOH . C 3 HOH A 60 238 238 HOH HOH . C 3 HOH A 61 239 239 HOH HOH . C 3 HOH A 62 240 240 HOH HOH . C 3 HOH A 63 241 241 HOH HOH . C 3 HOH A 64 242 242 HOH HOH . C 3 HOH A 65 244 244 HOH HOH . C 3 HOH A 66 245 245 HOH HOH . C 3 HOH A 67 246 246 HOH HOH . C 3 HOH A 68 247 247 HOH HOH . C 3 HOH A 69 249 249 HOH HOH . C 3 HOH A 70 250 250 HOH HOH . C 3 HOH A 71 253 253 HOH HOH . C 3 HOH A 72 254 254 HOH HOH . C 3 HOH A 73 256 256 HOH HOH . C 3 HOH A 74 258 258 HOH HOH . C 3 HOH A 75 260 260 HOH HOH . C 3 HOH A 76 261 261 HOH HOH . C 3 HOH A 77 262 262 HOH HOH . C 3 HOH A 78 263 263 HOH HOH . C 3 HOH A 79 264 264 HOH HOH . C 3 HOH A 80 265 265 HOH HOH . C 3 HOH A 81 266 266 HOH HOH . C 3 HOH A 82 267 267 HOH HOH . C 3 HOH A 83 269 269 HOH HOH . C 3 HOH A 84 270 270 HOH HOH . C 3 HOH A 85 273 273 HOH HOH . C 3 HOH A 86 275 275 HOH HOH . C 3 HOH A 87 276 276 HOH HOH . C 3 HOH A 88 280 280 HOH HOH . C 3 HOH A 89 282 282 HOH HOH . C 3 HOH A 90 284 284 HOH HOH . C 3 HOH A 91 285 285 HOH HOH . C 3 HOH A 92 286 286 HOH HOH . C 3 HOH A 93 287 287 HOH HOH . C 3 HOH A 94 288 288 HOH HOH . C 3 HOH A 95 289 289 HOH HOH . C 3 HOH A 96 290 290 HOH HOH . C 3 HOH A 97 291 291 HOH HOH . C 3 HOH A 98 292 292 HOH HOH . C 3 HOH A 99 294 294 HOH HOH . C 3 HOH A 100 295 295 HOH HOH . C 3 HOH A 101 296 296 HOH HOH . C 3 HOH A 102 298 298 HOH HOH . C 3 HOH A 103 299 299 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 27.662 14.345 15.794 1 3.17 ? N1 FMN 139 A 1 HETATM 2 C C2 FMN . . . B 2 27.781 14.092 17.132 1 2 ? C2 FMN 139 A 1 HETATM 3 O O2 FMN . . . B 2 26.805 13.868 17.785 1 2 ? O2 FMN 139 A 1 HETATM 4 N N3 FMN . . . B 2 29.035 14.083 17.729 1 2 ? N3 FMN 139 A 1 HETATM 5 C C4 FMN . . . B 2 30.214 14.262 17.052 1 3.01 ? C4 FMN 139 A 1 HETATM 6 O O4 FMN . . . B 2 31.303 14.265 17.622 1 2.05 ? O4 FMN 139 A 1 HETATM 7 C C4A FMN . . . B 2 30.077 14.487 15.589 1 2.42 ? C4A FMN 139 A 1 HETATM 8 N N5 FMN . . . B 2 31.153 14.593 14.838 1 4.15 ? N5 FMN 139 A 1 HETATM 9 C C5A FMN . . . B 2 30.998 14.832 13.463 1 2.72 ? C5A FMN 139 A 1 HETATM 10 C C6 FMN . . . B 2 32.153 15.013 12.652 1 2 ? C6 FMN 139 A 1 HETATM 11 C C7 FMN . . . B 2 32.033 15.242 11.304 1 2.57 ? C7 FMN 139 A 1 HETATM 12 C C7M FMN . . . B 2 33.257 15.291 10.437 1 2 ? C7M FMN 139 A 1 HETATM 13 C C8 FMN . . . B 2 30.722 15.385 10.72 1 3.07 ? C8 FMN 139 A 1 HETATM 14 C C8M FMN . . . B 2 30.539 15.695 9.254 1 2 ? C8M FMN 139 A 1 HETATM 15 C C9 FMN . . . B 2 29.588 15.227 11.497 1 3.05 ? C9 FMN 139 A 1 HETATM 16 C C9A FMN . . . B 2 29.706 14.947 12.87 1 3.15 ? C9A FMN 139 A 1 HETATM 17 N N10 FMN . . . B 2 28.598 14.773 13.703 1 2.15 ? N10 FMN 139 A 1 HETATM 18 C C10 FMN . . . B 2 28.723 14.538 15.058 1 2 ? C10 FMN 139 A 1 HETATM 19 C C1' FMN . . . B 2 27.274 14.8 13.099 1 3.39 ? C1' FMN 139 A 1 HETATM 20 C C2' FMN . . . B 2 26.732 16.21 12.896 1 3.55 ? C2' FMN 139 A 1 HETATM 21 O O2' FMN . . . B 2 26.812 16.928 14.134 1 6.11 ? O2' FMN 139 A 1 HETATM 22 C C3' FMN . . . B 2 25.28 16.116 12.453 1 2 ? C3' FMN 139 A 1 HETATM 23 O O3' FMN . . . B 2 25.208 15.316 11.278 1 3.12 ? O3' FMN 139 A 1 HETATM 24 C C4' FMN . . . B 2 24.428 17.362 12.264 1 2.01 ? C4' FMN 139 A 1 HETATM 25 O O4' FMN . . . B 2 23.085 16.972 11.954 1 2 ? O4' FMN 139 A 1 HETATM 26 C C5' FMN . . . B 2 25.045 18.27 11.205 1 2.89 ? C5' FMN 139 A 1 HETATM 27 O O5' FMN . . . B 2 24.334 19.476 11.175 1 3.08 ? O5' FMN 139 A 1 HETATM 28 P P FMN . . . B 2 24.737 20.567 10.148 1 2.87 ? P FMN 139 A 1 HETATM 29 O O1P FMN . . . B 2 26.182 20.6 10.033 1 5.15 ? O1P FMN 139 A 1 HETATM 30 O O2P FMN . . . B 2 24.081 21.796 10.583 1 3.35 ? O2P FMN 139 A 1 HETATM 31 O O3P FMN . . . B 2 24.134 20.144 8.775 1 2 ? O3P FMN 139 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #