data_3NLO # _model_server_result.job_id IY1gqUVxKQqBDjkVQbbadg _model_server_result.datetime_utc '2024-11-24 04:05:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nlo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":750}' # _entry.id 3NLO # _exptl.entry_id 3NLO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NLO _cell.length_a 51.41 _cell.length_b 112 _cell.length_c 164.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NLO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 I ZN ZN . A ZN 900 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc5 I ZN ZN . A ZN 900 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 J FE HEM . B HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 177 n n CHA C4D HEM doub 178 n n CHA HHA HEM sing 179 n n CHB C4A HEM sing 180 n n CHB C1B HEM doub 181 n n CHB HHB HEM sing 182 n n CHC C4B HEM sing 183 n n CHC C1C HEM doub 184 n n CHC HHC HEM sing 185 n n CHD C4C HEM doub 186 n n CHD C1D HEM sing 187 n n CHD HHD HEM sing 188 n n C1A C2A HEM doub 189 n y C1A NA HEM sing 190 n y C2A C3A HEM sing 191 n y C2A CAA HEM sing 192 n n C3A C4A HEM doub 193 n y C3A CMA HEM sing 194 n n C4A NA HEM sing 195 n y CMA HMA HEM sing 196 n n CMA HMAA HEM sing 197 n n CMA HMAB HEM sing 198 n n CAA CBA HEM sing 199 n n CAA HAA HEM sing 200 n n CAA HAAA HEM sing 201 n n CBA CGA HEM sing 202 n n CBA HBA HEM sing 203 n n CBA HBAA HEM sing 204 n n CGA O1A HEM doub 205 n n CGA O2A HEM sing 206 n n C1B C2B HEM sing 207 n n C1B NB HEM sing 208 n n C2B C3B HEM doub 209 n n C2B CMB HEM sing 210 n n C3B C4B HEM sing 211 n n C3B CAB HEM sing 212 n n C4B NB HEM doub 213 n n CMB HMB HEM sing 214 n n CMB HMBA HEM sing 215 n n CMB HMBB HEM sing 216 n n CAB CBB HEM doub 217 n n CAB HAB HEM sing 218 n n CBB HBB HEM sing 219 n n CBB HBBA HEM sing 220 n n C1C C2C HEM sing 221 n y C1C NC HEM sing 222 n y C2C C3C HEM doub 223 n y C2C CMC HEM sing 224 n n C3C C4C HEM sing 225 n y C3C CAC HEM sing 226 n n C4C NC HEM sing 227 n y CMC HMC HEM sing 228 n n CMC HMCA HEM sing 229 n n CMC HMCB HEM sing 230 n n CAC CBC HEM doub 231 n n CAC HAC HEM sing 232 n n CBC HBC HEM sing 233 n n CBC HBCA HEM sing 234 n n C1D C2D HEM sing 235 n n C1D ND HEM doub 236 n n C2D C3D HEM doub 237 n n C2D CMD HEM sing 238 n n C3D C4D HEM sing 239 n n C3D CAD HEM sing 240 n n C4D ND HEM sing 241 n n CMD HMD HEM sing 242 n n CMD HMDA HEM sing 243 n n CMD HMDB HEM sing 244 n n CAD CBD HEM sing 245 n n CAD HAD HEM sing 246 n n CAD HADA HEM sing 247 n n CBD CGD HEM sing 248 n n CBD HBD HEM sing 249 n n CBD HBDA HEM sing 250 n n CGD O1D HEM doub 251 n n CGD O2D HEM sing 252 n n O2A H2A HEM sing 253 n n O2D H2D HEM sing 254 n n FE NA HEM sing 255 n n FE NB HEM sing 256 n n FE NC HEM sing 257 n n FE ND HEM sing 258 n n # _atom_sites.entry_id 3NLO _atom_sites.fract_transf_matrix[1][1] 0.019451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 750 750 HEM HEM . D 3 H4B A 1 760 760 H4B H4B . E 4 JSR A 1 800 800 JSR JSR . F 5 ACT A 1 860 860 ACT ACT . G 6 EDO A 1 890 890 EDO EDO . H 6 EDO A 1 891 891 EDO EDO . I 7 ZN A 1 900 900 ZN ZN . J 2 HEM B 1 750 750 HEM HEM . K 3 H4B B 1 760 760 H4B H4B . L 4 JSR B 1 800 800 JSR JSR . M 5 ACT B 1 860 860 ACT ACT . N 8 HOH A 1 1001 1001 HOH HOH . N 8 HOH A 2 1002 1002 HOH HOH . N 8 HOH A 3 1003 1003 HOH HOH . N 8 HOH A 4 1004 1004 HOH HOH . N 8 HOH A 5 1005 1005 HOH HOH . N 8 HOH A 6 1006 1006 HOH HOH . N 8 HOH A 7 1007 1007 HOH HOH . N 8 HOH A 8 1008 1008 HOH HOH . N 8 HOH A 9 1009 1009 HOH HOH . N 8 HOH A 10 1010 1010 HOH HOH . N 8 HOH A 11 1011 1011 HOH HOH . N 8 HOH A 12 1012 1012 HOH HOH . N 8 HOH A 13 1013 1013 HOH HOH . N 8 HOH A 14 1014 1014 HOH HOH . N 8 HOH A 15 1015 1015 HOH HOH . N 8 HOH A 16 1016 1016 HOH HOH . N 8 HOH A 17 1017 1017 HOH HOH . N 8 HOH A 18 1018 1018 HOH HOH . N 8 HOH A 19 1019 1019 HOH HOH . N 8 HOH A 20 1020 1020 HOH HOH . N 8 HOH A 21 1021 1021 HOH HOH . N 8 HOH A 22 1022 1022 HOH HOH . N 8 HOH A 23 1023 1023 HOH HOH . N 8 HOH A 24 1024 1024 HOH HOH . N 8 HOH A 25 1025 1025 HOH HOH . N 8 HOH A 26 1026 1026 HOH HOH . N 8 HOH A 27 1027 1027 HOH HOH . N 8 HOH A 28 1028 1028 HOH HOH . N 8 HOH A 29 1029 1029 HOH HOH . N 8 HOH A 30 1030 1030 HOH HOH . N 8 HOH A 31 1031 1031 HOH HOH . N 8 HOH A 32 1032 1032 HOH HOH . N 8 HOH A 33 1033 1033 HOH HOH . N 8 HOH A 34 1034 1034 HOH HOH . N 8 HOH A 35 1035 1035 HOH HOH . N 8 HOH A 36 1036 1036 HOH HOH . N 8 HOH A 37 1037 1037 HOH HOH . N 8 HOH A 38 1038 1038 HOH HOH . N 8 HOH A 39 1039 1039 HOH HOH . N 8 HOH A 40 1040 1040 HOH HOH . N 8 HOH A 41 1041 1041 HOH HOH . N 8 HOH A 42 1042 1042 HOH HOH . N 8 HOH A 43 1043 1043 HOH HOH . O 8 HOH B 1 1001 1001 HOH HOH . O 8 HOH B 2 1002 1002 HOH HOH . O 8 HOH B 3 1003 1003 HOH HOH . O 8 HOH B 4 1004 1004 HOH HOH . O 8 HOH B 5 1005 1005 HOH HOH . O 8 HOH B 6 1006 1006 HOH HOH . O 8 HOH B 7 1007 1007 HOH HOH . O 8 HOH B 8 1008 1008 HOH HOH . O 8 HOH B 9 1009 1009 HOH HOH . O 8 HOH B 10 1010 1010 HOH HOH . O 8 HOH B 11 1011 1011 HOH HOH . O 8 HOH B 12 1012 1012 HOH HOH . O 8 HOH B 13 1013 1013 HOH HOH . O 8 HOH B 14 1014 1014 HOH HOH . O 8 HOH B 15 1015 1015 HOH HOH . O 8 HOH B 16 1016 1016 HOH HOH . O 8 HOH B 17 1017 1017 HOH HOH . O 8 HOH B 18 1018 1018 HOH HOH . O 8 HOH B 19 1019 1019 HOH HOH . O 8 HOH B 20 1020 1020 HOH HOH . O 8 HOH B 21 1021 1021 HOH HOH . O 8 HOH B 22 1022 1022 HOH HOH . O 8 HOH B 23 1023 1023 HOH HOH . O 8 HOH B 24 1024 1024 HOH HOH . O 8 HOH B 25 1025 1025 HOH HOH . O 8 HOH B 26 1026 1026 HOH HOH . O 8 HOH B 27 1027 1027 HOH HOH . O 8 HOH B 28 1028 1028 HOH HOH . O 8 HOH B 29 1029 1029 HOH HOH . O 8 HOH B 30 1030 1030 HOH HOH . O 8 HOH B 31 1031 1031 HOH HOH . O 8 HOH B 32 1032 1032 HOH HOH . O 8 HOH B 33 1033 1033 HOH HOH . O 8 HOH B 34 1034 1034 HOH HOH . O 8 HOH B 35 1035 1035 HOH HOH . O 8 HOH B 36 1036 1036 HOH HOH . O 8 HOH B 37 1037 1037 HOH HOH . O 8 HOH B 38 1038 1038 HOH HOH . O 8 HOH B 39 1039 1039 HOH HOH . O 8 HOH B 40 1040 1040 HOH HOH . O 8 HOH B 41 1041 1041 HOH HOH . O 8 HOH B 42 1042 1042 HOH HOH . O 8 HOH B 43 1043 1043 HOH HOH . O 8 HOH B 44 1044 1044 HOH HOH . O 8 HOH B 45 1045 1045 HOH HOH . O 8 HOH B 46 1046 1046 HOH HOH . O 8 HOH B 47 1047 1047 HOH HOH . O 8 HOH B 48 1048 1048 HOH HOH . O 8 HOH B 49 1049 1049 HOH HOH . O 8 HOH B 50 1050 1050 HOH HOH . O 8 HOH B 51 1051 1051 HOH HOH . O 8 HOH B 52 1052 1052 HOH HOH . O 8 HOH B 53 1053 1053 HOH HOH . O 8 HOH B 54 1054 1054 HOH HOH . O 8 HOH B 55 1055 1055 HOH HOH . O 8 HOH B 56 1056 1056 HOH HOH . O 8 HOH B 57 1057 1057 HOH HOH . O 8 HOH B 58 1058 1058 HOH HOH . O 8 HOH B 59 1059 1059 HOH HOH . O 8 HOH B 60 1060 1060 HOH HOH . O 8 HOH B 61 1061 1061 HOH HOH . O 8 HOH B 62 1062 1062 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 12.632 5.053 26.601 1 48.04 ? CHA HEM 750 A 1 HETATM 2 C CHB HEM . . . C 2 16.411 2.03 26.176 1 46.53 ? CHB HEM 750 A 1 HETATM 3 C CHC HEM . . . C 2 17.658 3.704 21.809 1 42.68 ? CHC HEM 750 A 1 HETATM 4 C CHD HEM . . . C 2 14.43 7.275 22.654 1 44.58 ? CHD HEM 750 A 1 HETATM 5 C C1A HEM . . . C 2 13.494 4.006 26.773 1 48.17 ? C1A HEM 750 A 1 HETATM 6 C C2A HEM . . . C 2 13.313 3.015 27.805 1 48.87 ? C2A HEM 750 A 1 HETATM 7 C C3A HEM . . . C 2 14.335 2.165 27.69 1 47.43 ? C3A HEM 750 A 1 HETATM 8 C C4A HEM . . . C 2 15.212 2.609 26.588 1 47.06 ? C4A HEM 750 A 1 HETATM 9 C CMA HEM . . . C 2 14.554 0.916 28.569 1 48.42 ? CMA HEM 750 A 1 HETATM 10 C CAA HEM . . . C 2 12.093 2.945 28.763 1 56.71 ? CAA HEM 750 A 1 HETATM 11 C CBA HEM . . . C 2 11.079 2.081 27.993 1 65.24 ? CBA HEM 750 A 1 HETATM 12 C CGA HEM . . . C 2 10.228 1.156 28.824 1 71.91 ? CGA HEM 750 A 1 HETATM 13 O O1A HEM . . . C 2 10.778 0.377 29.699 1 72.47 ? O1A HEM 750 A 1 HETATM 14 O O2A HEM . . . C 2 8.967 1.214 28.561 1 77.43 ? O2A HEM 750 A 1 HETATM 15 C C1B HEM . . . C 2 17.035 2.154 24.963 1 44.41 ? C1B HEM 750 A 1 HETATM 16 C C2B HEM . . . C 2 18.05 1.274 24.44 1 46.71 ? C2B HEM 750 A 1 HETATM 17 C C3B HEM . . . C 2 18.419 1.731 23.236 1 44.85 ? C3B HEM 750 A 1 HETATM 18 C C4B HEM . . . C 2 17.64 2.924 22.956 1 43.81 ? C4B HEM 750 A 1 HETATM 19 C CMB HEM . . . C 2 18.626 0.018 25.145 1 47.83 ? CMB HEM 750 A 1 HETATM 20 C CAB HEM . . . C 2 19.473 1.042 22.337 1 50.73 ? CAB HEM 750 A 1 HETATM 21 C CBB HEM . . . C 2 20.217 1.684 21.421 1 53.26 ? CBB HEM 750 A 1 HETATM 22 C C1C HEM . . . C 2 16.813 4.785 21.591 1 41.95 ? C1C HEM 750 A 1 HETATM 23 C C2C HEM . . . C 2 16.724 5.597 20.391 1 43.79 ? C2C HEM 750 A 1 HETATM 24 C C3C HEM . . . C 2 15.834 6.576 20.653 1 42.39 ? C3C HEM 750 A 1 HETATM 25 C C4C HEM . . . C 2 15.314 6.412 21.996 1 42.42 ? C4C HEM 750 A 1 HETATM 26 C CMC HEM . . . C 2 17.507 5.282 19.065 1 40.09 ? CMC HEM 750 A 1 HETATM 27 C CAC HEM . . . C 2 15.334 7.674 19.717 1 40.47 ? CAC HEM 750 A 1 HETATM 28 C CBC HEM . . . C 2 16.075 8.11 18.701 1 44.18 ? CBC HEM 750 A 1 HETATM 29 C C1D HEM . . . C 2 13.623 7.022 23.774 1 45.86 ? C1D HEM 750 A 1 HETATM 30 C C2D HEM . . . C 2 12.455 7.792 24.18 1 49.35 ? C2D HEM 750 A 1 HETATM 31 C C3D HEM . . . C 2 11.891 7.087 25.39 1 51.56 ? C3D HEM 750 A 1 HETATM 32 C C4D HEM . . . C 2 12.777 5.964 25.581 1 49.95 ? C4D HEM 750 A 1 HETATM 33 C CMD HEM . . . C 2 11.897 9.082 23.52 1 51.86 ? CMD HEM 750 A 1 HETATM 34 C CAD HEM . . . C 2 10.66 7.432 26.249 1 58.27 ? CAD HEM 750 A 1 HETATM 35 C CBD HEM . . . C 2 9.376 7.054 25.48 1 66.56 ? CBD HEM 750 A 1 HETATM 36 C CGD HEM . . . C 2 8.588 5.851 26.043 1 70.24 ? CGD HEM 750 A 1 HETATM 37 O O1D HEM . . . C 2 7.735 6.062 26.972 1 70.27 ? O1D HEM 750 A 1 HETATM 38 O O2D HEM . . . C 2 8.777 4.68 25.548 1 67.24 ? O2D HEM 750 A 1 HETATM 39 N NA HEM . . . C 2 14.702 3.789 26.104 1 44.12 ? NA HEM 750 A 1 HETATM 40 N NB HEM . . . C 2 16.87 3.197 24.064 1 42.39 ? NB HEM 750 A 1 HETATM 41 N NC HEM . . . C 2 16.001 5.352 22.541 1 42.29 ? NC HEM 750 A 1 HETATM 42 N ND HEM . . . C 2 13.8 5.992 24.657 1 42.32 ? ND HEM 750 A 1 HETATM 43 FE FE HEM . . . C 2 15.441 4.614 24.4 1 45.15 ? FE HEM 750 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #