data_3NLO # _model_server_result.job_id odtKq5itpebBEmhOpy6siw _model_server_result.datetime_utc '2024-11-04 23:00:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nlo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":760}' # _entry.id 3NLO # _exptl.entry_id 3NLO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NLO _cell.length_a 51.41 _cell.length_b 112 _cell.length_c 164.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NLO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 I ZN ZN . A ZN 900 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc5 I ZN ZN . A ZN 900 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 J FE HEM . B HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 144 n y N1 C8A H4B sing 145 n y C2 N2 H4B sing 146 n n C2 N3 H4B sing 147 n y N2 HN21 H4B sing 148 n n N2 HN22 H4B sing 149 n n N3 C4 H4B sing 150 n y N3 HN3 H4B sing 151 n n C4 O4 H4B doub 152 n n C4 C4A H4B sing 153 n y C4A C8A H4B doub 154 n y C4A N5 H4B sing 155 n n C8A N8 H4B sing 156 n n N5 C6 H4B sing 157 n n N5 HN5 H4B sing 158 n n N8 C7 H4B sing 159 n n N8 HN8 H4B sing 160 n n C6 C7 H4B sing 161 n n C6 C9 H4B sing 162 n n C6 H6 H4B sing 163 n n C7 H71 H4B sing 164 n n C7 H72 H4B sing 165 n n C9 O9 H4B sing 166 n n C9 C10 H4B sing 167 n n C9 H9 H4B sing 168 n n O9 HO9 H4B sing 169 n n C10 C11 H4B sing 170 n n C10 O10 H4B sing 171 n n C10 H10 H4B sing 172 n n C11 H111 H4B sing 173 n n C11 H112 H4B sing 174 n n C11 H113 H4B sing 175 n n O10 HO0 H4B sing 176 n n # _atom_sites.entry_id 3NLO _atom_sites.fract_transf_matrix[1][1] 0.019451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 750 750 HEM HEM . D 3 H4B A 1 760 760 H4B H4B . E 4 JSR A 1 800 800 JSR JSR . F 5 ACT A 1 860 860 ACT ACT . G 6 EDO A 1 890 890 EDO EDO . H 6 EDO A 1 891 891 EDO EDO . I 7 ZN A 1 900 900 ZN ZN . J 2 HEM B 1 750 750 HEM HEM . K 3 H4B B 1 760 760 H4B H4B . L 4 JSR B 1 800 800 JSR JSR . M 5 ACT B 1 860 860 ACT ACT . N 8 HOH A 1 1001 1001 HOH HOH . N 8 HOH A 2 1002 1002 HOH HOH . N 8 HOH A 3 1003 1003 HOH HOH . N 8 HOH A 4 1004 1004 HOH HOH . N 8 HOH A 5 1005 1005 HOH HOH . N 8 HOH A 6 1006 1006 HOH HOH . N 8 HOH A 7 1007 1007 HOH HOH . N 8 HOH A 8 1008 1008 HOH HOH . N 8 HOH A 9 1009 1009 HOH HOH . N 8 HOH A 10 1010 1010 HOH HOH . N 8 HOH A 11 1011 1011 HOH HOH . N 8 HOH A 12 1012 1012 HOH HOH . N 8 HOH A 13 1013 1013 HOH HOH . N 8 HOH A 14 1014 1014 HOH HOH . N 8 HOH A 15 1015 1015 HOH HOH . N 8 HOH A 16 1016 1016 HOH HOH . N 8 HOH A 17 1017 1017 HOH HOH . N 8 HOH A 18 1018 1018 HOH HOH . N 8 HOH A 19 1019 1019 HOH HOH . N 8 HOH A 20 1020 1020 HOH HOH . N 8 HOH A 21 1021 1021 HOH HOH . N 8 HOH A 22 1022 1022 HOH HOH . N 8 HOH A 23 1023 1023 HOH HOH . N 8 HOH A 24 1024 1024 HOH HOH . N 8 HOH A 25 1025 1025 HOH HOH . N 8 HOH A 26 1026 1026 HOH HOH . N 8 HOH A 27 1027 1027 HOH HOH . N 8 HOH A 28 1028 1028 HOH HOH . N 8 HOH A 29 1029 1029 HOH HOH . N 8 HOH A 30 1030 1030 HOH HOH . N 8 HOH A 31 1031 1031 HOH HOH . N 8 HOH A 32 1032 1032 HOH HOH . N 8 HOH A 33 1033 1033 HOH HOH . N 8 HOH A 34 1034 1034 HOH HOH . N 8 HOH A 35 1035 1035 HOH HOH . N 8 HOH A 36 1036 1036 HOH HOH . N 8 HOH A 37 1037 1037 HOH HOH . N 8 HOH A 38 1038 1038 HOH HOH . N 8 HOH A 39 1039 1039 HOH HOH . N 8 HOH A 40 1040 1040 HOH HOH . N 8 HOH A 41 1041 1041 HOH HOH . N 8 HOH A 42 1042 1042 HOH HOH . N 8 HOH A 43 1043 1043 HOH HOH . O 8 HOH B 1 1001 1001 HOH HOH . O 8 HOH B 2 1002 1002 HOH HOH . O 8 HOH B 3 1003 1003 HOH HOH . O 8 HOH B 4 1004 1004 HOH HOH . O 8 HOH B 5 1005 1005 HOH HOH . O 8 HOH B 6 1006 1006 HOH HOH . O 8 HOH B 7 1007 1007 HOH HOH . O 8 HOH B 8 1008 1008 HOH HOH . O 8 HOH B 9 1009 1009 HOH HOH . O 8 HOH B 10 1010 1010 HOH HOH . O 8 HOH B 11 1011 1011 HOH HOH . O 8 HOH B 12 1012 1012 HOH HOH . O 8 HOH B 13 1013 1013 HOH HOH . O 8 HOH B 14 1014 1014 HOH HOH . O 8 HOH B 15 1015 1015 HOH HOH . O 8 HOH B 16 1016 1016 HOH HOH . O 8 HOH B 17 1017 1017 HOH HOH . O 8 HOH B 18 1018 1018 HOH HOH . O 8 HOH B 19 1019 1019 HOH HOH . O 8 HOH B 20 1020 1020 HOH HOH . O 8 HOH B 21 1021 1021 HOH HOH . O 8 HOH B 22 1022 1022 HOH HOH . O 8 HOH B 23 1023 1023 HOH HOH . O 8 HOH B 24 1024 1024 HOH HOH . O 8 HOH B 25 1025 1025 HOH HOH . O 8 HOH B 26 1026 1026 HOH HOH . O 8 HOH B 27 1027 1027 HOH HOH . O 8 HOH B 28 1028 1028 HOH HOH . O 8 HOH B 29 1029 1029 HOH HOH . O 8 HOH B 30 1030 1030 HOH HOH . O 8 HOH B 31 1031 1031 HOH HOH . O 8 HOH B 32 1032 1032 HOH HOH . O 8 HOH B 33 1033 1033 HOH HOH . O 8 HOH B 34 1034 1034 HOH HOH . O 8 HOH B 35 1035 1035 HOH HOH . O 8 HOH B 36 1036 1036 HOH HOH . O 8 HOH B 37 1037 1037 HOH HOH . O 8 HOH B 38 1038 1038 HOH HOH . O 8 HOH B 39 1039 1039 HOH HOH . O 8 HOH B 40 1040 1040 HOH HOH . O 8 HOH B 41 1041 1041 HOH HOH . O 8 HOH B 42 1042 1042 HOH HOH . O 8 HOH B 43 1043 1043 HOH HOH . O 8 HOH B 44 1044 1044 HOH HOH . O 8 HOH B 45 1045 1045 HOH HOH . O 8 HOH B 46 1046 1046 HOH HOH . O 8 HOH B 47 1047 1047 HOH HOH . O 8 HOH B 48 1048 1048 HOH HOH . O 8 HOH B 49 1049 1049 HOH HOH . O 8 HOH B 50 1050 1050 HOH HOH . O 8 HOH B 51 1051 1051 HOH HOH . O 8 HOH B 52 1052 1052 HOH HOH . O 8 HOH B 53 1053 1053 HOH HOH . O 8 HOH B 54 1054 1054 HOH HOH . O 8 HOH B 55 1055 1055 HOH HOH . O 8 HOH B 56 1056 1056 HOH HOH . O 8 HOH B 57 1057 1057 HOH HOH . O 8 HOH B 58 1058 1058 HOH HOH . O 8 HOH B 59 1059 1059 HOH HOH . O 8 HOH B 60 1060 1060 HOH HOH . O 8 HOH B 61 1061 1061 HOH HOH . O 8 HOH B 62 1062 1062 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . K 3 14.6 3.423 48.445 1 51.47 ? N1 H4B 760 B 1 HETATM 2 C C2 H4B . . . K 3 14.625 2.932 49.721 1 52.01 ? C2 H4B 760 B 1 HETATM 3 N N2 H4B . . . K 3 13.577 2.193 50.196 1 48.87 ? N2 H4B 760 B 1 HETATM 4 N N3 H4B . . . K 3 15.695 3.175 50.484 1 50.93 ? N3 H4B 760 B 1 HETATM 5 C C4 H4B . . . K 3 16.74 3.902 49.981 1 53.91 ? C4 H4B 760 B 1 HETATM 6 O O4 H4B . . . K 3 17.739 4.124 50.734 1 55.35 ? O4 H4B 760 B 1 HETATM 7 C C4A H4B . . . K 3 16.695 4.417 48.679 1 49.48 ? C4A H4B 760 B 1 HETATM 8 C C8A H4B . . . K 3 15.586 4.164 47.916 1 49.74 ? C8A H4B 760 B 1 HETATM 9 N N5 H4B . . . K 3 17.702 5.149 48.123 1 51.81 ? N5 H4B 760 B 1 HETATM 10 N N8 H4B . . . K 3 15.475 4.61 46.612 1 51.93 ? N8 H4B 760 B 1 HETATM 11 C C6 H4B . . . K 3 17.374 6.081 47.031 1 56.16 ? C6 H4B 760 B 1 HETATM 12 C C7 H4B . . . K 3 16.527 5.415 45.937 1 52.07 ? C7 H4B 760 B 1 HETATM 13 C C9 H4B . . . K 3 18.615 6.711 46.423 1 59.32 ? C9 H4B 760 B 1 HETATM 14 O O9 H4B . . . K 3 19.576 5.689 46.111 1 64.85 ? O9 H4B 760 B 1 HETATM 15 C C10 H4B . . . K 3 18.26 7.545 45.18 1 59.22 ? C10 H4B 760 B 1 HETATM 16 C C11 H4B . . . K 3 19.482 8.203 44.585 1 56.09 ? C11 H4B 760 B 1 HETATM 17 O O10 H4B . . . K 3 17.276 8.542 45.499 1 58.79 ? O10 H4B 760 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 17 #