data_3NLO
#
_model_server_result.job_id            qMvXpA8l2tgL9U-bRCpO9A 
_model_server_result.datetime_utc      '2024-11-04 22:57:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nlo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":800}' 
#
_entry.id    3NLO 
#
_exptl.entry_id    3NLO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              372.48 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-{[(3R,4S)-4-(2-{[2-(3-fluorophenyl)ethyl]amino}ethoxy)pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NLO 
_cell.length_a            51.41 
_cell.length_b            112 
_cell.length_c            164.3 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NLO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc4 I ZN ZN . A ZN 900 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc5 I ZN ZN . A ZN 900 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 J FE HEM . B HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
#
_chem_comp.formula           'C21 H29 F N4 O' 
_chem_comp.formula_weight    372.48 
_chem_comp.id                JSR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-{[(3R,4S)-4-(2-{[2-(3-fluorophenyl)ethyl]amino}ethoxy)pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 JSR sing 303 n n 
C2 C1 JSR sing 304 n n 
C1 H1 JSR sing 305 n n 
C1 H1A JSR sing 306 n n 
O1 C3' JSR sing 307 n n 
C2 N2 JSR sing 308 n n 
C2 H2 JSR sing 309 n n 
C2 H2A JSR sing 310 n n 
N2 C3 JSR sing 311 n n 
N2 HN2 JSR sing 312 n n 
C3 C4 JSR sing 313 n n 
C3 H3 JSR sing 314 n n 
C3 H3A JSR sing 315 n n 
C4 C11 JSR sing 316 n n 
C4 H4 JSR sing 317 n n 
C4 H4A JSR sing 318 n n 
C5' N1' JSR sing 319 n n 
C2' N1' JSR sing 320 n n 
N1' HN1' JSR sing 321 n n 
C11 C12 JSR doub 322 n y 
C11 C16 JSR sing 323 n y 
C12 C13 JSR sing 324 n y 
C12 H12 JSR sing 325 n n 
C13 F13 JSR sing 326 n n 
C13 C14 JSR doub 327 n y 
C15 C14 JSR sing 328 n y 
C14 H14 JSR sing 329 n n 
C16 C15 JSR doub 330 n y 
C15 H15 JSR sing 331 n n 
C16 H16 JSR sing 332 n n 
C6A N1A JSR doub 333 n y 
C2A N1A JSR sing 334 n y 
C3' C2' JSR sing 335 n n 
C2' H2' JSR sing 336 n n 
C2' "H2'A" JSR sing 337 n n 
C3A C2A JSR doub 338 n y 
C2A C7A JSR sing 339 n n 
C4' C3' JSR sing 340 n n 
C3' H3' JSR sing 341 n n 
C4A C3A JSR sing 342 n y 
C3A H3AA JSR sing 343 n n 
C7A C4' JSR sing 344 n n 
C4' C5' JSR sing 345 n n 
C4' H4' JSR sing 346 n n 
C8A C4A JSR sing 347 n n 
C4A C5A JSR doub 348 n y 
C5' H5' JSR sing 349 n n 
C5' "H5'A" JSR sing 350 n n 
C5A C6A JSR sing 351 n y 
C5A H5A JSR sing 352 n n 
C6A N6A JSR sing 353 n n 
N6A HN6A JSR sing 354 n n 
N6A HN6B JSR sing 355 n n 
C7A H7A JSR sing 356 n n 
C7A H7AA JSR sing 357 n n 
C8A H8A JSR sing 358 n n 
C8A H8AA JSR sing 359 n n 
C8A H8AB JSR sing 360 n n 
#
_atom_sites.entry_id                     3NLO 
_atom_sites.fract_transf_matrix[1][1]    0.019451 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008929 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006086 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 750 750 HEM HEM . 
D 3 H4B A 1 760 760 H4B H4B . 
E 4 JSR A 1 800 800 JSR JSR . 
F 5 ACT A 1 860 860 ACT ACT . 
G 6 EDO A 1 890 890 EDO EDO . 
H 6 EDO A 1 891 891 EDO EDO . 
I 7 ZN A 1 900 900 ZN ZN . 
J 2 HEM B 1 750 750 HEM HEM . 
K 3 H4B B 1 760 760 H4B H4B . 
L 4 JSR B 1 800 800 JSR JSR . 
M 5 ACT B 1 860 860 ACT ACT . 
N 8 HOH A 1 1001 1001 HOH HOH . 
N 8 HOH A 2 1002 1002 HOH HOH . 
N 8 HOH A 3 1003 1003 HOH HOH . 
N 8 HOH A 4 1004 1004 HOH HOH . 
N 8 HOH A 5 1005 1005 HOH HOH . 
N 8 HOH A 6 1006 1006 HOH HOH . 
N 8 HOH A 7 1007 1007 HOH HOH . 
N 8 HOH A 8 1008 1008 HOH HOH . 
N 8 HOH A 9 1009 1009 HOH HOH . 
N 8 HOH A 10 1010 1010 HOH HOH . 
N 8 HOH A 11 1011 1011 HOH HOH . 
N 8 HOH A 12 1012 1012 HOH HOH . 
N 8 HOH A 13 1013 1013 HOH HOH . 
N 8 HOH A 14 1014 1014 HOH HOH . 
N 8 HOH A 15 1015 1015 HOH HOH . 
N 8 HOH A 16 1016 1016 HOH HOH . 
N 8 HOH A 17 1017 1017 HOH HOH . 
N 8 HOH A 18 1018 1018 HOH HOH . 
N 8 HOH A 19 1019 1019 HOH HOH . 
N 8 HOH A 20 1020 1020 HOH HOH . 
N 8 HOH A 21 1021 1021 HOH HOH . 
N 8 HOH A 22 1022 1022 HOH HOH . 
N 8 HOH A 23 1023 1023 HOH HOH . 
N 8 HOH A 24 1024 1024 HOH HOH . 
N 8 HOH A 25 1025 1025 HOH HOH . 
N 8 HOH A 26 1026 1026 HOH HOH . 
N 8 HOH A 27 1027 1027 HOH HOH . 
N 8 HOH A 28 1028 1028 HOH HOH . 
N 8 HOH A 29 1029 1029 HOH HOH . 
N 8 HOH A 30 1030 1030 HOH HOH . 
N 8 HOH A 31 1031 1031 HOH HOH . 
N 8 HOH A 32 1032 1032 HOH HOH . 
N 8 HOH A 33 1033 1033 HOH HOH . 
N 8 HOH A 34 1034 1034 HOH HOH . 
N 8 HOH A 35 1035 1035 HOH HOH . 
N 8 HOH A 36 1036 1036 HOH HOH . 
N 8 HOH A 37 1037 1037 HOH HOH . 
N 8 HOH A 38 1038 1038 HOH HOH . 
N 8 HOH A 39 1039 1039 HOH HOH . 
N 8 HOH A 40 1040 1040 HOH HOH . 
N 8 HOH A 41 1041 1041 HOH HOH . 
N 8 HOH A 42 1042 1042 HOH HOH . 
N 8 HOH A 43 1043 1043 HOH HOH . 
O 8 HOH B 1 1001 1001 HOH HOH . 
O 8 HOH B 2 1002 1002 HOH HOH . 
O 8 HOH B 3 1003 1003 HOH HOH . 
O 8 HOH B 4 1004 1004 HOH HOH . 
O 8 HOH B 5 1005 1005 HOH HOH . 
O 8 HOH B 6 1006 1006 HOH HOH . 
O 8 HOH B 7 1007 1007 HOH HOH . 
O 8 HOH B 8 1008 1008 HOH HOH . 
O 8 HOH B 9 1009 1009 HOH HOH . 
O 8 HOH B 10 1010 1010 HOH HOH . 
O 8 HOH B 11 1011 1011 HOH HOH . 
O 8 HOH B 12 1012 1012 HOH HOH . 
O 8 HOH B 13 1013 1013 HOH HOH . 
O 8 HOH B 14 1014 1014 HOH HOH . 
O 8 HOH B 15 1015 1015 HOH HOH . 
O 8 HOH B 16 1016 1016 HOH HOH . 
O 8 HOH B 17 1017 1017 HOH HOH . 
O 8 HOH B 18 1018 1018 HOH HOH . 
O 8 HOH B 19 1019 1019 HOH HOH . 
O 8 HOH B 20 1020 1020 HOH HOH . 
O 8 HOH B 21 1021 1021 HOH HOH . 
O 8 HOH B 22 1022 1022 HOH HOH . 
O 8 HOH B 23 1023 1023 HOH HOH . 
O 8 HOH B 24 1024 1024 HOH HOH . 
O 8 HOH B 25 1025 1025 HOH HOH . 
O 8 HOH B 26 1026 1026 HOH HOH . 
O 8 HOH B 27 1027 1027 HOH HOH . 
O 8 HOH B 28 1028 1028 HOH HOH . 
O 8 HOH B 29 1029 1029 HOH HOH . 
O 8 HOH B 30 1030 1030 HOH HOH . 
O 8 HOH B 31 1031 1031 HOH HOH . 
O 8 HOH B 32 1032 1032 HOH HOH . 
O 8 HOH B 33 1033 1033 HOH HOH . 
O 8 HOH B 34 1034 1034 HOH HOH . 
O 8 HOH B 35 1035 1035 HOH HOH . 
O 8 HOH B 36 1036 1036 HOH HOH . 
O 8 HOH B 37 1037 1037 HOH HOH . 
O 8 HOH B 38 1038 1038 HOH HOH . 
O 8 HOH B 39 1039 1039 HOH HOH . 
O 8 HOH B 40 1040 1040 HOH HOH . 
O 8 HOH B 41 1041 1041 HOH HOH . 
O 8 HOH B 42 1042 1042 HOH HOH . 
O 8 HOH B 43 1043 1043 HOH HOH . 
O 8 HOH B 44 1044 1044 HOH HOH . 
O 8 HOH B 45 1045 1045 HOH HOH . 
O 8 HOH B 46 1046 1046 HOH HOH . 
O 8 HOH B 47 1047 1047 HOH HOH . 
O 8 HOH B 48 1048 1048 HOH HOH . 
O 8 HOH B 49 1049 1049 HOH HOH . 
O 8 HOH B 50 1050 1050 HOH HOH . 
O 8 HOH B 51 1051 1051 HOH HOH . 
O 8 HOH B 52 1052 1052 HOH HOH . 
O 8 HOH B 53 1053 1053 HOH HOH . 
O 8 HOH B 54 1054 1054 HOH HOH . 
O 8 HOH B 55 1055 1055 HOH HOH . 
O 8 HOH B 56 1056 1056 HOH HOH . 
O 8 HOH B 57 1057 1057 HOH HOH . 
O 8 HOH B 58 1058 1058 HOH HOH . 
O 8 HOH B 59 1059 1059 HOH HOH . 
O 8 HOH B 60 1060 1060 HOH HOH . 
O 8 HOH B 61 1061 1061 HOH HOH . 
O 8 HOH B 62 1062 1062 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 JSR . . . E 4 7.93 -1.736 25.977 1 106.13 ? C1 JSR 800 A 1 
HETATM 2 O O1 JSR . . . E 4 8.604 -1.052 24.892 1 99.48 ? O1 JSR 800 A 1 
HETATM 3 C C2 JSR . . . E 4 6.417 -1.949 25.744 1 113.39 ? C2 JSR 800 A 1 
HETATM 4 N N2 JSR . . . E 4 5.586 -1.509 26.867 1 120.21 ? N2 JSR 800 A 1 
HETATM 5 C C3 JSR . . . E 4 4.735 -0.313 26.826 1 125.42 ? C3 JSR 800 A 1 
HETATM 6 C C4 JSR . . . E 4 4.945 0.68 27.992 1 128.24 ? C4 JSR 800 A 1 
HETATM 7 N N1' JSR . . . E 4 7.891 2.344 24.577 1 82.62 ? N1' JSR 800 A 1 
HETATM 8 C C11 JSR . . . E 4 3.84 1.74 28.07 1 132.75 ? C11 JSR 800 A 1 
HETATM 9 C C12 JSR . . . E 4 4.162 3.114 28.14 1 132.32 ? C12 JSR 800 A 1 
HETATM 10 C C13 JSR . . . E 4 3.137 4.082 28.211 1 134.34 ? C13 JSR 800 A 1 
HETATM 11 F F13 JSR . . . E 4 3.434 5.399 28.277 1 132.92 ? F13 JSR 800 A 1 
HETATM 12 C C14 JSR . . . E 4 1.79 3.681 28.219 1 137.08 ? C14 JSR 800 A 1 
HETATM 13 C C15 JSR . . . E 4 1.458 2.321 28.149 1 138.25 ? C15 JSR 800 A 1 
HETATM 14 C C16 JSR . . . E 4 2.478 1.359 28.08 1 136.5 ? C16 JSR 800 A 1 
HETATM 15 N N1A JSR . . . E 4 13.401 0.409 24.003 1 68.25 ? N1A JSR 800 A 1 
HETATM 16 C C2' JSR . . . E 4 7.781 1.2 25.438 1 90.02 ? C2' JSR 800 A 1 
HETATM 17 C C2A JSR . . . E 4 12.446 1.325 23.673 1 71.01 ? C2A JSR 800 A 1 
HETATM 18 C C3' JSR . . . E 4 9.015 0.311 25.193 1 90.61 ? C3' JSR 800 A 1 
HETATM 19 C C3A JSR . . . E 4 12.669 2.099 22.528 1 65.91 ? C3A JSR 800 A 1 
HETATM 20 C C4' JSR . . . E 4 9.866 1.001 24.111 1 82.38 ? C4' JSR 800 A 1 
HETATM 21 C C4A JSR . . . E 4 13.807 1.898 21.75 1 62.53 ? C4A JSR 800 A 1 
HETATM 22 C C5' JSR . . . E 4 9.143 2.307 23.857 1 83.46 ? C5' JSR 800 A 1 
HETATM 23 C C5A JSR . . . E 4 14.75 0.959 22.124 1 61.15 ? C5A JSR 800 A 1 
HETATM 24 C C6A JSR . . . E 4 14.525 0.218 23.267 1 63.11 ? C6A JSR 800 A 1 
HETATM 25 N N6A JSR . . . E 4 15.425 -0.711 23.652 1 62.01 ? N6A JSR 800 A 1 
HETATM 26 C C7A JSR . . . E 4 11.23 1.493 24.589 1 75.36 ? C7A JSR 800 A 1 
HETATM 27 C C8A JSR . . . E 4 14.053 2.687 20.483 1 60.19 ? C8A JSR 800 A 1 
#
_model_server_stats.io_time_ms              105 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#