data_3NLU # _model_server_result.job_id bt29V_M2FZ5pffL3s6ITjA _model_server_result.datetime_utc '2025-01-10 11:16:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nlu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3NLU # _exptl.entry_id 3NLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NLU _cell.length_a 57.976 _cell.length_b 107.015 _cell.length_c 156.845 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc4 I ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc5 I ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc6 B SG CYS 148 B CYS 186 1_555 J FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 250 n n CHA C4D HEM doub 251 n n CHA HHA HEM sing 252 n n CHB C4A HEM sing 253 n n CHB C1B HEM doub 254 n n CHB HHB HEM sing 255 n n CHC C4B HEM sing 256 n n CHC C1C HEM doub 257 n n CHC HHC HEM sing 258 n n CHD C4C HEM doub 259 n n CHD C1D HEM sing 260 n n CHD HHD HEM sing 261 n n C1A C2A HEM doub 262 n y C1A NA HEM sing 263 n y C2A C3A HEM sing 264 n y C2A CAA HEM sing 265 n n C3A C4A HEM doub 266 n y C3A CMA HEM sing 267 n n C4A NA HEM sing 268 n y CMA HMA HEM sing 269 n n CMA HMAA HEM sing 270 n n CMA HMAB HEM sing 271 n n CAA CBA HEM sing 272 n n CAA HAA HEM sing 273 n n CAA HAAA HEM sing 274 n n CBA CGA HEM sing 275 n n CBA HBA HEM sing 276 n n CBA HBAA HEM sing 277 n n CGA O1A HEM doub 278 n n CGA O2A HEM sing 279 n n C1B C2B HEM sing 280 n n C1B NB HEM sing 281 n n C2B C3B HEM doub 282 n n C2B CMB HEM sing 283 n n C3B C4B HEM sing 284 n n C3B CAB HEM sing 285 n n C4B NB HEM doub 286 n n CMB HMB HEM sing 287 n n CMB HMBA HEM sing 288 n n CMB HMBB HEM sing 289 n n CAB CBB HEM doub 290 n n CAB HAB HEM sing 291 n n CBB HBB HEM sing 292 n n CBB HBBA HEM sing 293 n n C1C C2C HEM sing 294 n y C1C NC HEM sing 295 n y C2C C3C HEM doub 296 n y C2C CMC HEM sing 297 n n C3C C4C HEM sing 298 n y C3C CAC HEM sing 299 n n C4C NC HEM sing 300 n y CMC HMC HEM sing 301 n n CMC HMCA HEM sing 302 n n CMC HMCB HEM sing 303 n n CAC CBC HEM doub 304 n n CAC HAC HEM sing 305 n n CBC HBC HEM sing 306 n n CBC HBCA HEM sing 307 n n C1D C2D HEM sing 308 n n C1D ND HEM doub 309 n n C2D C3D HEM doub 310 n n C2D CMD HEM sing 311 n n C3D C4D HEM sing 312 n n C3D CAD HEM sing 313 n n C4D ND HEM sing 314 n n CMD HMD HEM sing 315 n n CMD HMDA HEM sing 316 n n CMD HMDB HEM sing 317 n n CAD CBD HEM sing 318 n n CAD HAD HEM sing 319 n n CAD HADA HEM sing 320 n n CBD CGD HEM sing 321 n n CBD HBD HEM sing 322 n n CBD HBDA HEM sing 323 n n CGD O1D HEM doub 324 n n CGD O2D HEM sing 325 n n O2A H2A HEM sing 326 n n O2D H2D HEM sing 327 n n FE NA HEM sing 328 n n FE NB HEM sing 329 n n FE NC HEM sing 330 n n FE ND HEM sing 331 n n # _atom_sites.entry_id 3NLU _atom_sites.fract_transf_matrix[1][1] 0.017249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 H4B A 1 600 600 H4B H4B . E 4 ACT A 1 860 860 ACT ACT . F 5 GOL A 1 880 880 GOL GOL . G 6 3XB A 1 800 800 3XB 3XB . H 7 CAD A 1 950 950 CAD CAD . I 8 ZN A 1 900 900 ZN ZN . J 2 HEM B 1 500 500 HEM HEM . K 3 H4B B 1 600 600 H4B H4B . L 5 GOL B 1 880 880 GOL GOL . M 6 3XB B 1 800 800 3XB 3XB . N 7 CAD B 1 950 950 CAD CAD . O 9 HOH A 1 1001 1001 HOH HOH . O 9 HOH A 2 1002 1002 HOH HOH . O 9 HOH A 3 1003 1003 HOH HOH . O 9 HOH A 4 1004 1004 HOH HOH . O 9 HOH A 5 1005 1005 HOH HOH . O 9 HOH A 6 1006 1006 HOH HOH . O 9 HOH A 7 1007 1007 HOH HOH . O 9 HOH A 8 1008 1008 HOH HOH . O 9 HOH A 9 1009 1009 HOH HOH . O 9 HOH A 10 1010 1010 HOH HOH . O 9 HOH A 11 1011 1011 HOH HOH . O 9 HOH A 12 1012 1012 HOH HOH . O 9 HOH A 13 1013 1013 HOH HOH . O 9 HOH A 14 1014 1014 HOH HOH . O 9 HOH A 15 1015 1015 HOH HOH . O 9 HOH A 16 1016 1016 HOH HOH . O 9 HOH A 17 1017 1017 HOH HOH . O 9 HOH A 18 1018 1018 HOH HOH . O 9 HOH A 19 1019 1019 HOH HOH . O 9 HOH A 20 1020 1020 HOH HOH . O 9 HOH A 21 1021 1021 HOH HOH . O 9 HOH A 22 1022 1022 HOH HOH . O 9 HOH A 23 1023 1023 HOH HOH . O 9 HOH A 24 1024 1024 HOH HOH . O 9 HOH A 25 1025 1025 HOH HOH . O 9 HOH A 26 1026 1026 HOH HOH . O 9 HOH A 27 1027 1027 HOH HOH . O 9 HOH A 28 1028 1028 HOH HOH . O 9 HOH A 29 1029 1029 HOH HOH . O 9 HOH A 30 1030 1030 HOH HOH . O 9 HOH A 31 1031 1031 HOH HOH . O 9 HOH A 32 1032 1032 HOH HOH . O 9 HOH A 33 1033 1033 HOH HOH . O 9 HOH A 34 1034 1034 HOH HOH . O 9 HOH A 35 1035 1035 HOH HOH . O 9 HOH A 36 1036 1036 HOH HOH . O 9 HOH A 37 1037 1037 HOH HOH . O 9 HOH A 38 1038 1038 HOH HOH . O 9 HOH A 39 1039 1039 HOH HOH . O 9 HOH A 40 1040 1040 HOH HOH . O 9 HOH A 41 1041 1041 HOH HOH . O 9 HOH A 42 1042 1042 HOH HOH . O 9 HOH A 43 1043 1043 HOH HOH . O 9 HOH A 44 1044 1044 HOH HOH . O 9 HOH A 45 1045 1045 HOH HOH . O 9 HOH A 46 1046 1046 HOH HOH . O 9 HOH A 47 1047 1047 HOH HOH . O 9 HOH A 48 1048 1048 HOH HOH . O 9 HOH A 49 1049 1049 HOH HOH . O 9 HOH A 50 1050 1050 HOH HOH . P 9 HOH B 1 1001 1001 HOH HOH . P 9 HOH B 2 1002 1002 HOH HOH . P 9 HOH B 3 1003 1003 HOH HOH . P 9 HOH B 4 1004 1004 HOH HOH . P 9 HOH B 5 1005 1005 HOH HOH . P 9 HOH B 6 1006 1006 HOH HOH . P 9 HOH B 7 1007 1007 HOH HOH . P 9 HOH B 8 1008 1008 HOH HOH . P 9 HOH B 9 1009 1009 HOH HOH . P 9 HOH B 10 1010 1010 HOH HOH . P 9 HOH B 11 1011 1011 HOH HOH . P 9 HOH B 12 1012 1012 HOH HOH . P 9 HOH B 13 1013 1013 HOH HOH . P 9 HOH B 14 1014 1014 HOH HOH . P 9 HOH B 15 1015 1015 HOH HOH . P 9 HOH B 16 1016 1016 HOH HOH . P 9 HOH B 17 1017 1017 HOH HOH . P 9 HOH B 18 1018 1018 HOH HOH . P 9 HOH B 19 1019 1019 HOH HOH . P 9 HOH B 20 1020 1020 HOH HOH . P 9 HOH B 21 1021 1021 HOH HOH . P 9 HOH B 22 1022 1022 HOH HOH . P 9 HOH B 23 1023 1023 HOH HOH . P 9 HOH B 24 1024 1024 HOH HOH . P 9 HOH B 25 1025 1025 HOH HOH . P 9 HOH B 26 1026 1026 HOH HOH . P 9 HOH B 27 1027 1027 HOH HOH . P 9 HOH B 28 1028 1028 HOH HOH . P 9 HOH B 29 1029 1029 HOH HOH . P 9 HOH B 30 1030 1030 HOH HOH . P 9 HOH B 31 1031 1031 HOH HOH . P 9 HOH B 32 1032 1032 HOH HOH . P 9 HOH B 33 1033 1033 HOH HOH . P 9 HOH B 34 1034 1034 HOH HOH . P 9 HOH B 35 1035 1035 HOH HOH . P 9 HOH B 36 1036 1036 HOH HOH . P 9 HOH B 37 1037 1037 HOH HOH . P 9 HOH B 38 1038 1038 HOH HOH . P 9 HOH B 39 1039 1039 HOH HOH . P 9 HOH B 40 1040 1040 HOH HOH . P 9 HOH B 41 1041 1041 HOH HOH . P 9 HOH B 42 1042 1042 HOH HOH . P 9 HOH B 43 1043 1043 HOH HOH . P 9 HOH B 44 1044 1044 HOH HOH . P 9 HOH B 45 1045 1045 HOH HOH . P 9 HOH B 46 1046 1046 HOH HOH . P 9 HOH B 47 1047 1047 HOH HOH . P 9 HOH B 48 1048 1048 HOH HOH . P 9 HOH B 49 1049 1049 HOH HOH . P 9 HOH B 50 1050 1050 HOH HOH . P 9 HOH B 51 1051 1051 HOH HOH . P 9 HOH B 52 1052 1052 HOH HOH . P 9 HOH B 53 1053 1053 HOH HOH . P 9 HOH B 54 1054 1054 HOH HOH . P 9 HOH B 55 1055 1055 HOH HOH . P 9 HOH B 56 1056 1056 HOH HOH . P 9 HOH B 57 1057 1057 HOH HOH . P 9 HOH B 58 1058 1058 HOH HOH . P 9 HOH B 59 1059 1059 HOH HOH . P 9 HOH B 60 1060 1060 HOH HOH . P 9 HOH B 61 1061 1061 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 9.144 8.852 35.289 1 22.88 ? CHA HEM 500 A 1 HETATM 2 C CHB HEM . . . C 2 4.573 8.916 33.868 1 21.52 ? CHB HEM 500 A 1 HETATM 3 C CHC HEM . . . C 2 6.008 7.235 29.615 1 21.2 ? CHC HEM 500 A 1 HETATM 4 C CHD HEM . . . C 2 10.424 6.407 31.261 1 19.76 ? CHD HEM 500 A 1 HETATM 5 C C1A HEM . . . C 2 7.805 9.154 35.262 1 22.29 ? C1A HEM 500 A 1 HETATM 6 C C2A HEM . . . C 2 7.045 9.977 36.186 1 22.45 ? C2A HEM 500 A 1 HETATM 7 C C3A HEM . . . C 2 5.761 9.996 35.798 1 21.44 ? C3A HEM 500 A 1 HETATM 8 C C4A HEM . . . C 2 5.697 9.186 34.602 1 20.19 ? C4A HEM 500 A 1 HETATM 9 C CMA HEM . . . C 2 4.577 10.761 36.494 1 17.57 ? CMA HEM 500 A 1 HETATM 10 C CAA HEM . . . C 2 7.601 10.721 37.409 1 25.97 ? CAA HEM 500 A 1 HETATM 11 C CBA HEM . . . C 2 8.516 11.807 36.841 1 31.55 ? CBA HEM 500 A 1 HETATM 12 C CGA HEM . . . C 2 8.654 13.083 37.651 1 33.07 ? CGA HEM 500 A 1 HETATM 13 O O1A HEM . . . C 2 7.774 13.419 38.497 1 35.05 ? O1A HEM 500 A 1 HETATM 14 O O2A HEM . . . C 2 9.665 13.788 37.399 1 32.9 ? O2A HEM 500 A 1 HETATM 15 C C1B HEM . . . C 2 4.558 8.499 32.568 1 20.84 ? C1B HEM 500 A 1 HETATM 16 C C2B HEM . . . C 2 3.406 8.487 31.687 1 21.85 ? C2B HEM 500 A 1 HETATM 17 C C3B HEM . . . C 2 3.823 7.997 30.522 1 22.64 ? C3B HEM 500 A 1 HETATM 18 C C4B HEM . . . C 2 5.236 7.712 30.631 1 22.28 ? C4B HEM 500 A 1 HETATM 19 C CMB HEM . . . C 2 1.961 8.914 32.018 1 18.47 ? CMB HEM 500 A 1 HETATM 20 C CAB HEM . . . C 2 2.986 7.788 29.249 1 23.9 ? CAB HEM 500 A 1 HETATM 21 C CBB HEM . . . C 2 3.349 6.803 28.419 1 23.75 ? CBB HEM 500 A 1 HETATM 22 C C1C HEM . . . C 2 7.331 6.952 29.666 1 19.97 ? C1C HEM 500 A 1 HETATM 23 C C2C HEM . . . C 2 8.141 6.595 28.525 1 19.39 ? C2C HEM 500 A 1 HETATM 24 C C3C HEM . . . C 2 9.369 6.37 28.98 1 20.12 ? C3C HEM 500 A 1 HETATM 25 C C4C HEM . . . C 2 9.378 6.572 30.411 1 20.29 ? C4C HEM 500 A 1 HETATM 26 C CMC HEM . . . C 2 7.704 6.505 27.049 1 15.75 ? CMC HEM 500 A 1 HETATM 27 C CAC HEM . . . C 2 10.556 5.963 28.105 1 20.78 ? CAC HEM 500 A 1 HETATM 28 C CBC HEM . . . C 2 10.427 4.912 27.296 1 21.54 ? CBC HEM 500 A 1 HETATM 29 C C1D HEM . . . C 2 10.501 7.021 32.48 1 21.17 ? C1D HEM 500 A 1 HETATM 30 C C2D HEM . . . C 2 11.718 7.161 33.245 1 21.24 ? C2D HEM 500 A 1 HETATM 31 C C3D HEM . . . C 2 11.313 7.908 34.49 1 22.28 ? C3D HEM 500 A 1 HETATM 32 C C4D HEM . . . C 2 9.898 8.172 34.349 1 22.69 ? C4D HEM 500 A 1 HETATM 33 C CMD HEM . . . C 2 13.124 6.65 32.879 1 22.61 ? CMD HEM 500 A 1 HETATM 34 C CAD HEM . . . C 2 12.257 8.338 35.623 1 25.69 ? CAD HEM 500 A 1 HETATM 35 C CBD HEM . . . C 2 12.72 9.719 35.153 1 28.65 ? CBD HEM 500 A 1 HETATM 36 C CGD HEM . . . C 2 13.865 10.324 35.919 1 29.96 ? CGD HEM 500 A 1 HETATM 37 O O1D HEM . . . C 2 14.462 9.631 36.794 1 32.88 ? O1D HEM 500 A 1 HETATM 38 O O2D HEM . . . C 2 14.163 11.521 35.634 1 31.16 ? O2D HEM 500 A 1 HETATM 39 N NA HEM . . . C 2 6.949 8.684 34.316 1 21.42 ? NA HEM 500 A 1 HETATM 40 N NB HEM . . . C 2 5.652 7.999 31.902 1 20.57 ? NB HEM 500 A 1 HETATM 41 N NC HEM . . . C 2 8.105 6.905 30.808 1 21.13 ? NC HEM 500 A 1 HETATM 42 N ND HEM . . . C 2 9.45 7.61 33.157 1 20.75 ? ND HEM 500 A 1 HETATM 43 FE FE HEM . . . C 2 7.563 7.745 32.552 1 22.33 ? FE HEM 500 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #