data_3NLU
#
_model_server_result.job_id            4qP4ChVwmDDmeMGkhk4rzA 
_model_server_result.datetime_utc      '2025-01-10 11:03:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nlu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":800}' 
#
_entry.id    3NLU 
#
_exptl.entry_id    3NLU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              408.46 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-{[(3R,4R)-4-(2-{[2,2-difluoro-2-(3-fluorophenyl)ethyl]amino}ethoxy)pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NLU 
_cell.length_a            57.976 
_cell.length_b            107.015 
_cell.length_c            156.845 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NLU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 I ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc5 I ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc6 B SG CYS 148 B CYS 186 1_555 J FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
#
_chem_comp.formula           'C21 H27 F3 N4 O' 
_chem_comp.formula_weight    408.46 
_chem_comp.id                3XB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-{[(3R,4R)-4-(2-{[2,2-difluoro-2-(3-fluorophenyl)ethyl]amino}ethoxy)pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 3XB sing 1 n n 
C2 C1 3XB sing 2 n n 
C1 H1 3XB sing 3 n n 
C1 H1A 3XB sing 4 n n 
C3' O1 3XB sing 5 n n 
C2 N2 3XB sing 6 n n 
C2 H2 3XB sing 7 n n 
C2 H2A 3XB sing 8 n n 
N2 C3 3XB sing 9 n n 
N2 HN2 3XB sing 10 n n 
C3 C4 3XB sing 11 n n 
C3 H3 3XB sing 12 n n 
C3 H3A 3XB sing 13 n n 
F6 C4 3XB sing 14 n n 
C4 C11 3XB sing 15 n n 
C4 F5 3XB sing 16 n n 
N1' C5' 3XB sing 17 n n 
N1' C2' 3XB sing 18 n n 
N1' HN1' 3XB sing 19 n n 
C16 C11 3XB doub 20 n y 
C11 C12 3XB sing 21 n y 
C12 C13 3XB doub 22 n y 
C12 H12 3XB sing 23 n n 
C14 C13 3XB sing 24 n y 
C13 F13 3XB sing 25 n n 
C15 C14 3XB doub 26 n y 
C14 H14 3XB sing 27 n n 
C16 C15 3XB sing 28 n y 
C15 H15 3XB sing 29 n n 
C16 H16 3XB sing 30 n n 
C6A N1A 3XB doub 31 n y 
C2A N1A 3XB sing 32 n y 
C2' C3' 3XB sing 33 n n 
C2' H2' 3XB sing 34 n n 
C2' "H2'A" 3XB sing 35 n n 
C3A C2A 3XB doub 36 n y 
C2A C7A 3XB sing 37 n n 
C4' C3' 3XB sing 38 n n 
C3' H3' 3XB sing 39 n n 
C4A C3A 3XB sing 40 n y 
C3A H3AA 3XB sing 41 n n 
C5' C4' 3XB sing 42 n n 
C4' C7A 3XB sing 43 n n 
C4' H4' 3XB sing 44 n n 
C8A C4A 3XB sing 45 n n 
C4A C5A 3XB doub 46 n y 
C5' H5' 3XB sing 47 n n 
C5' "H5'A" 3XB sing 48 n n 
C5A C6A 3XB sing 49 n y 
C5A H5A 3XB sing 50 n n 
C6A N6A 3XB sing 51 n n 
N6A HN6A 3XB sing 52 n n 
N6A HN6B 3XB sing 53 n n 
C7A H7A 3XB sing 54 n n 
C7A H7AA 3XB sing 55 n n 
C8A H8A 3XB sing 56 n n 
C8A H8AA 3XB sing 57 n n 
C8A H8AB 3XB sing 58 n n 
#
_atom_sites.entry_id                     3NLU 
_atom_sites.fract_transf_matrix[1][1]    0.017249 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009344 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 H4B A 1 600 600 H4B H4B . 
E 4 ACT A 1 860 860 ACT ACT . 
F 5 GOL A 1 880 880 GOL GOL . 
G 6 3XB A 1 800 800 3XB 3XB . 
H 7 CAD A 1 950 950 CAD CAD . 
I 8 ZN A 1 900 900 ZN ZN . 
J 2 HEM B 1 500 500 HEM HEM . 
K 3 H4B B 1 600 600 H4B H4B . 
L 5 GOL B 1 880 880 GOL GOL . 
M 6 3XB B 1 800 800 3XB 3XB . 
N 7 CAD B 1 950 950 CAD CAD . 
O 9 HOH A 1 1001 1001 HOH HOH . 
O 9 HOH A 2 1002 1002 HOH HOH . 
O 9 HOH A 3 1003 1003 HOH HOH . 
O 9 HOH A 4 1004 1004 HOH HOH . 
O 9 HOH A 5 1005 1005 HOH HOH . 
O 9 HOH A 6 1006 1006 HOH HOH . 
O 9 HOH A 7 1007 1007 HOH HOH . 
O 9 HOH A 8 1008 1008 HOH HOH . 
O 9 HOH A 9 1009 1009 HOH HOH . 
O 9 HOH A 10 1010 1010 HOH HOH . 
O 9 HOH A 11 1011 1011 HOH HOH . 
O 9 HOH A 12 1012 1012 HOH HOH . 
O 9 HOH A 13 1013 1013 HOH HOH . 
O 9 HOH A 14 1014 1014 HOH HOH . 
O 9 HOH A 15 1015 1015 HOH HOH . 
O 9 HOH A 16 1016 1016 HOH HOH . 
O 9 HOH A 17 1017 1017 HOH HOH . 
O 9 HOH A 18 1018 1018 HOH HOH . 
O 9 HOH A 19 1019 1019 HOH HOH . 
O 9 HOH A 20 1020 1020 HOH HOH . 
O 9 HOH A 21 1021 1021 HOH HOH . 
O 9 HOH A 22 1022 1022 HOH HOH . 
O 9 HOH A 23 1023 1023 HOH HOH . 
O 9 HOH A 24 1024 1024 HOH HOH . 
O 9 HOH A 25 1025 1025 HOH HOH . 
O 9 HOH A 26 1026 1026 HOH HOH . 
O 9 HOH A 27 1027 1027 HOH HOH . 
O 9 HOH A 28 1028 1028 HOH HOH . 
O 9 HOH A 29 1029 1029 HOH HOH . 
O 9 HOH A 30 1030 1030 HOH HOH . 
O 9 HOH A 31 1031 1031 HOH HOH . 
O 9 HOH A 32 1032 1032 HOH HOH . 
O 9 HOH A 33 1033 1033 HOH HOH . 
O 9 HOH A 34 1034 1034 HOH HOH . 
O 9 HOH A 35 1035 1035 HOH HOH . 
O 9 HOH A 36 1036 1036 HOH HOH . 
O 9 HOH A 37 1037 1037 HOH HOH . 
O 9 HOH A 38 1038 1038 HOH HOH . 
O 9 HOH A 39 1039 1039 HOH HOH . 
O 9 HOH A 40 1040 1040 HOH HOH . 
O 9 HOH A 41 1041 1041 HOH HOH . 
O 9 HOH A 42 1042 1042 HOH HOH . 
O 9 HOH A 43 1043 1043 HOH HOH . 
O 9 HOH A 44 1044 1044 HOH HOH . 
O 9 HOH A 45 1045 1045 HOH HOH . 
O 9 HOH A 46 1046 1046 HOH HOH . 
O 9 HOH A 47 1047 1047 HOH HOH . 
O 9 HOH A 48 1048 1048 HOH HOH . 
O 9 HOH A 49 1049 1049 HOH HOH . 
O 9 HOH A 50 1050 1050 HOH HOH . 
P 9 HOH B 1 1001 1001 HOH HOH . 
P 9 HOH B 2 1002 1002 HOH HOH . 
P 9 HOH B 3 1003 1003 HOH HOH . 
P 9 HOH B 4 1004 1004 HOH HOH . 
P 9 HOH B 5 1005 1005 HOH HOH . 
P 9 HOH B 6 1006 1006 HOH HOH . 
P 9 HOH B 7 1007 1007 HOH HOH . 
P 9 HOH B 8 1008 1008 HOH HOH . 
P 9 HOH B 9 1009 1009 HOH HOH . 
P 9 HOH B 10 1010 1010 HOH HOH . 
P 9 HOH B 11 1011 1011 HOH HOH . 
P 9 HOH B 12 1012 1012 HOH HOH . 
P 9 HOH B 13 1013 1013 HOH HOH . 
P 9 HOH B 14 1014 1014 HOH HOH . 
P 9 HOH B 15 1015 1015 HOH HOH . 
P 9 HOH B 16 1016 1016 HOH HOH . 
P 9 HOH B 17 1017 1017 HOH HOH . 
P 9 HOH B 18 1018 1018 HOH HOH . 
P 9 HOH B 19 1019 1019 HOH HOH . 
P 9 HOH B 20 1020 1020 HOH HOH . 
P 9 HOH B 21 1021 1021 HOH HOH . 
P 9 HOH B 22 1022 1022 HOH HOH . 
P 9 HOH B 23 1023 1023 HOH HOH . 
P 9 HOH B 24 1024 1024 HOH HOH . 
P 9 HOH B 25 1025 1025 HOH HOH . 
P 9 HOH B 26 1026 1026 HOH HOH . 
P 9 HOH B 27 1027 1027 HOH HOH . 
P 9 HOH B 28 1028 1028 HOH HOH . 
P 9 HOH B 29 1029 1029 HOH HOH . 
P 9 HOH B 30 1030 1030 HOH HOH . 
P 9 HOH B 31 1031 1031 HOH HOH . 
P 9 HOH B 32 1032 1032 HOH HOH . 
P 9 HOH B 33 1033 1033 HOH HOH . 
P 9 HOH B 34 1034 1034 HOH HOH . 
P 9 HOH B 35 1035 1035 HOH HOH . 
P 9 HOH B 36 1036 1036 HOH HOH . 
P 9 HOH B 37 1037 1037 HOH HOH . 
P 9 HOH B 38 1038 1038 HOH HOH . 
P 9 HOH B 39 1039 1039 HOH HOH . 
P 9 HOH B 40 1040 1040 HOH HOH . 
P 9 HOH B 41 1041 1041 HOH HOH . 
P 9 HOH B 42 1042 1042 HOH HOH . 
P 9 HOH B 43 1043 1043 HOH HOH . 
P 9 HOH B 44 1044 1044 HOH HOH . 
P 9 HOH B 45 1045 1045 HOH HOH . 
P 9 HOH B 46 1046 1046 HOH HOH . 
P 9 HOH B 47 1047 1047 HOH HOH . 
P 9 HOH B 48 1048 1048 HOH HOH . 
P 9 HOH B 49 1049 1049 HOH HOH . 
P 9 HOH B 50 1050 1050 HOH HOH . 
P 9 HOH B 51 1051 1051 HOH HOH . 
P 9 HOH B 52 1052 1052 HOH HOH . 
P 9 HOH B 53 1053 1053 HOH HOH . 
P 9 HOH B 54 1054 1054 HOH HOH . 
P 9 HOH B 55 1055 1055 HOH HOH . 
P 9 HOH B 56 1056 1056 HOH HOH . 
P 9 HOH B 57 1057 1057 HOH HOH . 
P 9 HOH B 58 1058 1058 HOH HOH . 
P 9 HOH B 59 1059 1059 HOH HOH . 
P 9 HOH B 60 1060 1060 HOH HOH . 
P 9 HOH B 61 1061 1061 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3XB . . . M 6 -2.075 4.017 64.465 1 51.78 ? C1 3XB 800 B 1 
HETATM 2 O O1 3XB . . . M 6 -1.126 3.328 63.664 1 52.77 ? O1 3XB 800 B 1 
HETATM 3 C C2 3XB . . . M 6 -1.637 5.457 64.419 1 49.45 ? C2 3XB 800 B 1 
HETATM 4 N N2 3XB . . . M 6 -0.189 5.545 64.468 1 50.73 ? N2 3XB 800 B 1 
HETATM 5 C C3 3XB . . . M 6 0.439 6.758 64.989 1 52.5 ? C3 3XB 800 B 1 
HETATM 6 C C4 3XB . . . M 6 -0.548 7.444 65.924 1 52.69 ? C4 3XB 800 B 1 
HETATM 7 F F5 3XB . . . M 6 -0.896 6.542 66.823 1 57.46 ? F5 3XB 800 B 1 
HETATM 8 F F6 3XB . . . M 6 -1.661 7.714 65.26 1 55.46 ? F6 3XB 800 B 1 
HETATM 9 N N1' 3XB . . . M 6 -0.592 3.547 60.472 1 50.7 ? N1' 3XB 800 B 1 
HETATM 10 C C11 3XB . . . M 6 -0.036 8.658 66.66 1 49.34 ? C11 3XB 800 B 1 
HETATM 11 C C12 3XB . . . M 6 0.55 8.498 67.896 1 46.6 ? C12 3XB 800 B 1 
HETATM 12 C C13 3XB . . . M 6 0.981 9.59 68.595 1 44.41 ? C13 3XB 800 B 1 
HETATM 13 F F13 3XB . . . M 6 1.534 9.396 69.785 1 44.99 ? F13 3XB 800 B 1 
HETATM 14 C C14 3XB . . . M 6 0.832 10.864 68.095 1 43.94 ? C14 3XB 800 B 1 
HETATM 15 C C15 3XB . . . M 6 0.23 11.049 66.871 1 44.75 ? C15 3XB 800 B 1 
HETATM 16 C C16 3XB . . . M 6 -0.208 9.943 66.172 1 47.31 ? C16 3XB 800 B 1 
HETATM 17 N N1A 3XB . . . M 6 2.416 0.347 62.805 1 49.69 ? N1A 3XB 800 B 1 
HETATM 18 C C2' 3XB . . . M 6 -1.773 3.772 61.291 1 51.7 ? C2' 3XB 800 B 1 
HETATM 19 C C2A 3XB . . . M 6 1.076 0.194 62.738 1 48.17 ? C2A 3XB 800 B 1 
HETATM 20 C C3' 3XB . . . M 6 -1.65 2.768 62.45 1 51.64 ? C3' 3XB 800 B 1 
HETATM 21 C C3A 3XB . . . M 6 0.499 -0.953 62.206 1 48.77 ? C3A 3XB 800 B 1 
HETATM 22 C C4' 3XB . . . M 6 -0.602 1.763 62.018 1 50.51 ? C4' 3XB 800 B 1 
HETATM 23 C C4A 3XB . . . M 6 1.327 -1.974 61.741 1 50.39 ? C4A 3XB 800 B 1 
HETATM 24 C C5' 3XB . . . M 6 0.219 2.421 60.905 1 49.89 ? C5' 3XB 800 B 1 
HETATM 25 C C5A 3XB . . . M 6 2.723 -1.809 61.826 1 50.23 ? C5A 3XB 800 B 1 
HETATM 26 C C6A 3XB . . . M 6 3.251 -0.622 62.371 1 50.04 ? C6A 3XB 800 B 1 
HETATM 27 N N6A 3XB . . . M 6 4.582 -0.403 62.482 1 49.9 ? N6A 3XB 800 B 1 
HETATM 28 C C7A 3XB . . . M 6 0.223 1.313 63.22 1 48.01 ? C7A 3XB 800 B 1 
HETATM 29 C C8A 3XB . . . M 6 0.697 -3.229 61.171 1 49.51 ? C8A 3XB 800 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           29 
#