data_3NM4 # _model_server_result.job_id mmqOxU_petErGUJP9NCrng _model_server_result.datetime_utc '2024-11-27 03:20:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1004}' # _entry.id 3NM4 # _exptl.entry_id 3NM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NM4 _cell.length_a 81.31 _cell.length_b 81.31 _cell.length_c 135.485 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3NM4 _atom_sites.fract_transf_matrix[1][1] 0.012299 _atom_sites.fract_transf_matrix[1][2] 0.007101 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRS A 1 301 301 TRS TRS . D 3 EDO A 1 1002 1002 EDO EDO . E 3 EDO A 1 1005 1005 EDO EDO . F 3 EDO B 1 1001 1001 EDO EDO . G 3 EDO B 1 1003 1003 EDO EDO . H 3 EDO B 1 1004 1004 EDO EDO . I 3 EDO B 1 1006 1006 EDO EDO . J 4 HOH A 1 231 231 HOH HOH . J 4 HOH A 2 232 232 HOH HOH . J 4 HOH A 3 233 2 HOH HOH . J 4 HOH A 4 234 4 HOH HOH . J 4 HOH A 5 235 5 HOH HOH . J 4 HOH A 6 236 236 HOH HOH . J 4 HOH A 7 237 237 HOH HOH . J 4 HOH A 8 238 238 HOH HOH . J 4 HOH A 9 239 7 HOH HOH . J 4 HOH A 10 240 240 HOH HOH . J 4 HOH A 11 241 241 HOH HOH . J 4 HOH A 12 242 9 HOH HOH . J 4 HOH A 13 243 12 HOH HOH . J 4 HOH A 14 244 244 HOH HOH . J 4 HOH A 15 245 14 HOH HOH . J 4 HOH A 16 246 246 HOH HOH . J 4 HOH A 17 247 247 HOH HOH . J 4 HOH A 18 248 248 HOH HOH . J 4 HOH A 19 249 17 HOH HOH . J 4 HOH A 20 250 250 HOH HOH . J 4 HOH A 21 251 21 HOH HOH . J 4 HOH A 22 252 252 HOH HOH . J 4 HOH A 23 253 24 HOH HOH . J 4 HOH A 24 254 25 HOH HOH . J 4 HOH A 25 255 255 HOH HOH . J 4 HOH A 26 256 26 HOH HOH . J 4 HOH A 27 257 27 HOH HOH . J 4 HOH A 28 258 29 HOH HOH . J 4 HOH A 29 259 30 HOH HOH . J 4 HOH A 30 260 31 HOH HOH . J 4 HOH A 31 261 32 HOH HOH . J 4 HOH A 32 262 262 HOH HOH . J 4 HOH A 33 263 36 HOH HOH . J 4 HOH A 34 264 40 HOH HOH . J 4 HOH A 35 265 41 HOH HOH . J 4 HOH A 36 266 266 HOH HOH . J 4 HOH A 37 267 42 HOH HOH . J 4 HOH A 38 268 268 HOH HOH . J 4 HOH A 39 269 43 HOH HOH . J 4 HOH A 40 270 270 HOH HOH . J 4 HOH A 41 271 44 HOH HOH . J 4 HOH A 42 272 272 HOH HOH . J 4 HOH A 43 273 46 HOH HOH . J 4 HOH A 44 274 274 HOH HOH . J 4 HOH A 45 275 48 HOH HOH . J 4 HOH A 46 276 49 HOH HOH . J 4 HOH A 47 277 51 HOH HOH . J 4 HOH A 48 278 278 HOH HOH . J 4 HOH A 49 279 52 HOH HOH . J 4 HOH A 50 280 53 HOH HOH . J 4 HOH A 51 281 281 HOH HOH . J 4 HOH A 52 282 56 HOH HOH . J 4 HOH A 53 283 57 HOH HOH . J 4 HOH A 54 284 58 HOH HOH . J 4 HOH A 55 285 59 HOH HOH . J 4 HOH A 56 286 63 HOH HOH . J 4 HOH A 57 287 64 HOH HOH . J 4 HOH A 58 288 66 HOH HOH . J 4 HOH A 59 289 68 HOH HOH . J 4 HOH A 60 290 69 HOH HOH . J 4 HOH A 61 291 71 HOH HOH . J 4 HOH A 62 292 72 HOH HOH . J 4 HOH A 63 293 74 HOH HOH . J 4 HOH A 64 294 294 HOH HOH . J 4 HOH A 65 295 295 HOH HOH . J 4 HOH A 66 296 76 HOH HOH . J 4 HOH A 67 297 79 HOH HOH . J 4 HOH A 68 298 298 HOH HOH . J 4 HOH A 69 299 81 HOH HOH . J 4 HOH A 70 300 300 HOH HOH . J 4 HOH A 71 302 86 HOH HOH . J 4 HOH A 72 303 303 HOH HOH . J 4 HOH A 73 304 304 HOH HOH . J 4 HOH A 74 305 88 HOH HOH . J 4 HOH A 75 306 89 HOH HOH . J 4 HOH A 76 307 90 HOH HOH . J 4 HOH A 77 308 92 HOH HOH . J 4 HOH A 78 309 93 HOH HOH . J 4 HOH A 79 310 310 HOH HOH . J 4 HOH A 80 311 311 HOH HOH . J 4 HOH A 81 312 312 HOH HOH . J 4 HOH A 82 313 94 HOH HOH . J 4 HOH A 83 314 95 HOH HOH . J 4 HOH A 84 315 96 HOH HOH . J 4 HOH A 85 316 97 HOH HOH . J 4 HOH A 86 317 98 HOH HOH . J 4 HOH A 87 318 99 HOH HOH . J 4 HOH A 88 319 100 HOH HOH . J 4 HOH A 89 320 320 HOH HOH . J 4 HOH A 90 321 321 HOH HOH . J 4 HOH A 91 322 322 HOH HOH . J 4 HOH A 92 323 102 HOH HOH . J 4 HOH A 93 324 324 HOH HOH . J 4 HOH A 94 325 103 HOH HOH . J 4 HOH A 95 326 104 HOH HOH . J 4 HOH A 96 327 327 HOH HOH . J 4 HOH A 97 328 105 HOH HOH . J 4 HOH A 98 329 108 HOH HOH . J 4 HOH A 99 330 330 HOH HOH . J 4 HOH A 100 331 110 HOH HOH . J 4 HOH A 101 332 332 HOH HOH . J 4 HOH A 102 333 111 HOH HOH . J 4 HOH A 103 334 112 HOH HOH . J 4 HOH A 104 335 335 HOH HOH . J 4 HOH A 105 336 114 HOH HOH . J 4 HOH A 106 337 337 HOH HOH . J 4 HOH A 107 338 115 HOH HOH . J 4 HOH A 108 339 116 HOH HOH . J 4 HOH A 109 340 117 HOH HOH . J 4 HOH A 110 341 118 HOH HOH . J 4 HOH A 111 342 119 HOH HOH . J 4 HOH A 112 343 120 HOH HOH . J 4 HOH A 113 344 122 HOH HOH . J 4 HOH A 114 345 345 HOH HOH . J 4 HOH A 115 346 123 HOH HOH . J 4 HOH A 116 347 347 HOH HOH . J 4 HOH A 117 348 124 HOH HOH . J 4 HOH A 118 349 126 HOH HOH . J 4 HOH A 119 350 350 HOH HOH . J 4 HOH A 120 351 351 HOH HOH . J 4 HOH A 121 352 129 HOH HOH . J 4 HOH A 122 353 131 HOH HOH . J 4 HOH A 123 354 354 HOH HOH . J 4 HOH A 124 355 132 HOH HOH . J 4 HOH A 125 356 133 HOH HOH . J 4 HOH A 126 357 139 HOH HOH . J 4 HOH A 127 358 358 HOH HOH . J 4 HOH A 128 359 141 HOH HOH . J 4 HOH A 129 360 143 HOH HOH . J 4 HOH A 130 361 144 HOH HOH . J 4 HOH A 131 362 146 HOH HOH . J 4 HOH A 132 363 148 HOH HOH . J 4 HOH A 133 364 149 HOH HOH . J 4 HOH A 134 365 152 HOH HOH . J 4 HOH A 135 366 153 HOH HOH . J 4 HOH A 136 367 154 HOH HOH . J 4 HOH A 137 368 157 HOH HOH . J 4 HOH A 138 369 158 HOH HOH . J 4 HOH A 139 370 161 HOH HOH . J 4 HOH A 140 371 165 HOH HOH . J 4 HOH A 141 372 170 HOH HOH . J 4 HOH A 142 373 171 HOH HOH . J 4 HOH A 143 374 172 HOH HOH . J 4 HOH A 144 375 375 HOH HOH . J 4 HOH A 145 376 173 HOH HOH . J 4 HOH A 146 377 175 HOH HOH . J 4 HOH A 147 378 177 HOH HOH . J 4 HOH A 148 379 178 HOH HOH . J 4 HOH A 149 380 181 HOH HOH . J 4 HOH A 150 381 182 HOH HOH . J 4 HOH A 151 382 183 HOH HOH . J 4 HOH A 152 383 184 HOH HOH . J 4 HOH A 153 384 186 HOH HOH . J 4 HOH A 154 385 191 HOH HOH . J 4 HOH A 155 386 194 HOH HOH . J 4 HOH A 156 387 195 HOH HOH . J 4 HOH A 157 388 196 HOH HOH . J 4 HOH A 158 389 197 HOH HOH . J 4 HOH A 159 390 198 HOH HOH . J 4 HOH A 160 391 199 HOH HOH . J 4 HOH A 161 392 204 HOH HOH . J 4 HOH A 162 393 205 HOH HOH . J 4 HOH A 163 394 208 HOH HOH . J 4 HOH A 164 395 209 HOH HOH . J 4 HOH A 165 396 211 HOH HOH . J 4 HOH A 166 397 213 HOH HOH . J 4 HOH A 167 398 214 HOH HOH . J 4 HOH A 168 399 215 HOH HOH . J 4 HOH A 169 400 216 HOH HOH . J 4 HOH A 170 401 220 HOH HOH . J 4 HOH A 171 402 221 HOH HOH . J 4 HOH A 172 403 225 HOH HOH . J 4 HOH A 173 404 226 HOH HOH . J 4 HOH A 174 405 228 HOH HOH . J 4 HOH A 175 406 230 HOH HOH . J 4 HOH A 176 407 407 HOH HOH . J 4 HOH A 177 408 301 HOH HOH . J 4 HOH A 178 419 419 HOH HOH . J 4 HOH A 179 438 438 HOH HOH . J 4 HOH A 180 439 439 HOH HOH . J 4 HOH A 181 440 440 HOH HOH . J 4 HOH A 182 442 442 HOH HOH . J 4 HOH A 183 462 462 HOH HOH . J 4 HOH A 184 463 463 HOH HOH . J 4 HOH A 185 464 464 HOH HOH . K 4 HOH B 1 231 1 HOH HOH . K 4 HOH B 2 232 3 HOH HOH . K 4 HOH B 3 233 233 HOH HOH . K 4 HOH B 4 234 6 HOH HOH . K 4 HOH B 5 235 235 HOH HOH . K 4 HOH B 6 236 8 HOH HOH . K 4 HOH B 7 237 10 HOH HOH . K 4 HOH B 8 238 11 HOH HOH . K 4 HOH B 9 239 239 HOH HOH . K 4 HOH B 10 240 13 HOH HOH . K 4 HOH B 11 241 15 HOH HOH . K 4 HOH B 12 242 242 HOH HOH . K 4 HOH B 13 243 243 HOH HOH . K 4 HOH B 14 244 16 HOH HOH . K 4 HOH B 15 245 245 HOH HOH . K 4 HOH B 16 246 18 HOH HOH . K 4 HOH B 17 247 19 HOH HOH . K 4 HOH B 18 248 20 HOH HOH . K 4 HOH B 19 249 249 HOH HOH . K 4 HOH B 20 250 22 HOH HOH . K 4 HOH B 21 251 251 HOH HOH . K 4 HOH B 22 252 23 HOH HOH . K 4 HOH B 23 253 253 HOH HOH . K 4 HOH B 24 254 28 HOH HOH . K 4 HOH B 25 255 33 HOH HOH . K 4 HOH B 26 256 256 HOH HOH . K 4 HOH B 27 257 257 HOH HOH . K 4 HOH B 28 258 34 HOH HOH . K 4 HOH B 29 259 259 HOH HOH . K 4 HOH B 30 260 35 HOH HOH . K 4 HOH B 31 261 261 HOH HOH . K 4 HOH B 32 262 37 HOH HOH . K 4 HOH B 33 263 263 HOH HOH . K 4 HOH B 34 264 264 HOH HOH . K 4 HOH B 35 265 265 HOH HOH . K 4 HOH B 36 266 38 HOH HOH . K 4 HOH B 37 267 267 HOH HOH . K 4 HOH B 38 268 39 HOH HOH . K 4 HOH B 39 269 269 HOH HOH . K 4 HOH B 40 270 45 HOH HOH . K 4 HOH B 41 271 47 HOH HOH . K 4 HOH B 42 272 50 HOH HOH . K 4 HOH B 43 273 273 HOH HOH . K 4 HOH B 44 274 54 HOH HOH . K 4 HOH B 45 275 55 HOH HOH . K 4 HOH B 46 276 276 HOH HOH . K 4 HOH B 47 277 60 HOH HOH . K 4 HOH B 48 278 61 HOH HOH . K 4 HOH B 49 279 279 HOH HOH . K 4 HOH B 50 280 280 HOH HOH . K 4 HOH B 51 281 62 HOH HOH . K 4 HOH B 52 282 282 HOH HOH . K 4 HOH B 53 283 67 HOH HOH . K 4 HOH B 54 284 70 HOH HOH . K 4 HOH B 55 285 285 HOH HOH . K 4 HOH B 56 286 73 HOH HOH . K 4 HOH B 57 287 75 HOH HOH . K 4 HOH B 58 288 77 HOH HOH . K 4 HOH B 59 289 78 HOH HOH . K 4 HOH B 60 290 290 HOH HOH . K 4 HOH B 61 291 80 HOH HOH . K 4 HOH B 62 292 292 HOH HOH . K 4 HOH B 63 293 82 HOH HOH . K 4 HOH B 64 294 83 HOH HOH . K 4 HOH B 65 295 84 HOH HOH . K 4 HOH B 66 296 296 HOH HOH . K 4 HOH B 67 297 85 HOH HOH . K 4 HOH B 68 298 87 HOH HOH . K 4 HOH B 69 299 91 HOH HOH . K 4 HOH B 70 300 101 HOH HOH . K 4 HOH B 71 301 106 HOH HOH . K 4 HOH B 72 302 107 HOH HOH . K 4 HOH B 73 303 109 HOH HOH . K 4 HOH B 74 304 113 HOH HOH . K 4 HOH B 75 305 121 HOH HOH . K 4 HOH B 76 306 125 HOH HOH . K 4 HOH B 77 307 128 HOH HOH . K 4 HOH B 78 308 130 HOH HOH . K 4 HOH B 79 309 134 HOH HOH . K 4 HOH B 80 310 135 HOH HOH . K 4 HOH B 81 311 136 HOH HOH . K 4 HOH B 82 312 137 HOH HOH . K 4 HOH B 83 313 313 HOH HOH . K 4 HOH B 84 314 314 HOH HOH . K 4 HOH B 85 315 140 HOH HOH . K 4 HOH B 86 316 142 HOH HOH . K 4 HOH B 87 317 145 HOH HOH . K 4 HOH B 88 318 147 HOH HOH . K 4 HOH B 89 319 150 HOH HOH . K 4 HOH B 90 320 155 HOH HOH . K 4 HOH B 91 321 156 HOH HOH . K 4 HOH B 92 322 159 HOH HOH . K 4 HOH B 93 323 323 HOH HOH . K 4 HOH B 94 324 160 HOH HOH . K 4 HOH B 95 325 162 HOH HOH . K 4 HOH B 96 326 326 HOH HOH . K 4 HOH B 97 327 163 HOH HOH . K 4 HOH B 98 328 328 HOH HOH . K 4 HOH B 99 329 164 HOH HOH . K 4 HOH B 100 330 166 HOH HOH . K 4 HOH B 101 331 167 HOH HOH . K 4 HOH B 102 332 168 HOH HOH . K 4 HOH B 103 333 169 HOH HOH . K 4 HOH B 104 334 174 HOH HOH . K 4 HOH B 105 335 176 HOH HOH . K 4 HOH B 106 336 179 HOH HOH . K 4 HOH B 107 337 185 HOH HOH . K 4 HOH B 108 338 338 HOH HOH . K 4 HOH B 109 339 188 HOH HOH . K 4 HOH B 110 340 340 HOH HOH . K 4 HOH B 111 341 341 HOH HOH . K 4 HOH B 112 342 342 HOH HOH . K 4 HOH B 113 343 343 HOH HOH . K 4 HOH B 114 344 344 HOH HOH . K 4 HOH B 115 345 189 HOH HOH . K 4 HOH B 116 346 346 HOH HOH . K 4 HOH B 117 347 192 HOH HOH . K 4 HOH B 118 348 193 HOH HOH . K 4 HOH B 119 349 349 HOH HOH . K 4 HOH B 120 350 200 HOH HOH . K 4 HOH B 121 351 201 HOH HOH . K 4 HOH B 122 352 202 HOH HOH . K 4 HOH B 123 353 353 HOH HOH . K 4 HOH B 124 354 206 HOH HOH . K 4 HOH B 125 355 210 HOH HOH . K 4 HOH B 126 356 212 HOH HOH . K 4 HOH B 127 357 217 HOH HOH . K 4 HOH B 128 358 218 HOH HOH . K 4 HOH B 129 359 359 HOH HOH . K 4 HOH B 130 360 360 HOH HOH . K 4 HOH B 131 361 219 HOH HOH . K 4 HOH B 132 362 222 HOH HOH . K 4 HOH B 133 363 223 HOH HOH . K 4 HOH B 134 364 224 HOH HOH . K 4 HOH B 135 365 227 HOH HOH . K 4 HOH B 136 366 229 HOH HOH . K 4 HOH B 137 417 417 HOH HOH . K 4 HOH B 138 436 436 HOH HOH . K 4 HOH B 139 437 437 HOH HOH . K 4 HOH B 140 458 458 HOH HOH . K 4 HOH B 141 465 465 HOH HOH . K 4 HOH B 142 484 484 HOH HOH . K 4 HOH B 143 485 485 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 20.997 -31.945 -32.914 1 29.4 ? C1 EDO 1004 B 1 HETATM 2 O O1 EDO . . . H 3 19.88 -31.165 -32.465 1 31.45 ? O1 EDO 1004 B 1 HETATM 3 C C2 EDO . . . H 3 22.124 -31.024 -33.37 1 39.29 ? C2 EDO 1004 B 1 HETATM 4 O O2 EDO . . . H 3 22.467 -30.123 -32.31 1 30.18 ? O2 EDO 1004 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #