data_3NM6
#
_model_server_result.job_id            i0mYcnP6a5u2z09skitOAg 
_model_server_result.datetime_utc      '2024-11-23 08:50:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nm6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    3NM6 
#
_exptl.entry_id    3NM6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NM6 
_cell.length_a            81.35 
_cell.length_b            81.35 
_cell.length_c            67.595 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NM6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_557 x-y,-y,-z+7/3 1 0 0 0 -1 0 0 0 -1 0 0 157.721667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 99 n n 
C1 C2 EDO sing 100 n n 
C1 H11 EDO sing 101 n n 
C1 H12 EDO sing 102 n n 
O1 HO1 EDO sing 103 n n 
C2 O2 EDO sing 104 n n 
C2 H21 EDO sing 105 n n 
C2 H22 EDO sing 106 n n 
O2 HO2 EDO sing 107 n n 
#
_atom_sites.entry_id                     3NM6 
_atom_sites.fract_transf_matrix[1][1]    0.012293 
_atom_sites.fract_transf_matrix[1][2]    0.007097 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014194 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014794 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADE B 1 231 231 ADE ADE . 
C 3 TRS B 1 232 232 TRS TRS . 
D 4 EDO B 1 1001 1001 EDO EDO . 
E 4 EDO B 1 1002 1002 EDO EDO . 
F 4 EDO B 1 1003 1003 EDO EDO . 
G 4 EDO B 1 1004 1004 EDO EDO . 
H 5 HOH B 1 233 233 HOH HOH . 
H 5 HOH B 2 234 234 HOH HOH . 
H 5 HOH B 3 235 235 HOH HOH . 
H 5 HOH B 4 236 236 HOH HOH . 
H 5 HOH B 5 237 237 HOH HOH . 
H 5 HOH B 6 238 238 HOH HOH . 
H 5 HOH B 7 239 239 HOH HOH . 
H 5 HOH B 8 240 240 HOH HOH . 
H 5 HOH B 9 241 241 HOH HOH . 
H 5 HOH B 10 242 242 HOH HOH . 
H 5 HOH B 11 243 243 HOH HOH . 
H 5 HOH B 12 244 244 HOH HOH . 
H 5 HOH B 13 245 245 HOH HOH . 
H 5 HOH B 14 246 246 HOH HOH . 
H 5 HOH B 15 247 247 HOH HOH . 
H 5 HOH B 16 248 248 HOH HOH . 
H 5 HOH B 17 249 249 HOH HOH . 
H 5 HOH B 18 250 250 HOH HOH . 
H 5 HOH B 19 251 251 HOH HOH . 
H 5 HOH B 20 252 252 HOH HOH . 
H 5 HOH B 21 253 253 HOH HOH . 
H 5 HOH B 22 254 254 HOH HOH . 
H 5 HOH B 23 255 255 HOH HOH . 
H 5 HOH B 24 256 256 HOH HOH . 
H 5 HOH B 25 257 257 HOH HOH . 
H 5 HOH B 26 258 258 HOH HOH . 
H 5 HOH B 27 259 259 HOH HOH . 
H 5 HOH B 28 260 260 HOH HOH . 
H 5 HOH B 29 261 261 HOH HOH . 
H 5 HOH B 30 262 262 HOH HOH . 
H 5 HOH B 31 263 263 HOH HOH . 
H 5 HOH B 32 264 264 HOH HOH . 
H 5 HOH B 33 265 265 HOH HOH . 
H 5 HOH B 34 266 266 HOH HOH . 
H 5 HOH B 35 267 267 HOH HOH . 
H 5 HOH B 36 268 268 HOH HOH . 
H 5 HOH B 37 269 269 HOH HOH . 
H 5 HOH B 38 270 270 HOH HOH . 
H 5 HOH B 39 271 271 HOH HOH . 
H 5 HOH B 40 272 272 HOH HOH . 
H 5 HOH B 41 273 273 HOH HOH . 
H 5 HOH B 42 274 274 HOH HOH . 
H 5 HOH B 43 275 275 HOH HOH . 
H 5 HOH B 44 276 276 HOH HOH . 
H 5 HOH B 45 277 277 HOH HOH . 
H 5 HOH B 46 278 278 HOH HOH . 
H 5 HOH B 47 279 279 HOH HOH . 
H 5 HOH B 48 280 280 HOH HOH . 
H 5 HOH B 49 281 281 HOH HOH . 
H 5 HOH B 50 282 282 HOH HOH . 
H 5 HOH B 51 283 283 HOH HOH . 
H 5 HOH B 52 284 284 HOH HOH . 
H 5 HOH B 53 285 285 HOH HOH . 
H 5 HOH B 54 286 286 HOH HOH . 
H 5 HOH B 55 287 287 HOH HOH . 
H 5 HOH B 56 288 288 HOH HOH . 
H 5 HOH B 57 289 289 HOH HOH . 
H 5 HOH B 58 290 290 HOH HOH . 
H 5 HOH B 59 291 291 HOH HOH . 
H 5 HOH B 60 292 292 HOH HOH . 
H 5 HOH B 61 293 293 HOH HOH . 
H 5 HOH B 62 294 294 HOH HOH . 
H 5 HOH B 63 295 295 HOH HOH . 
H 5 HOH B 64 296 296 HOH HOH . 
H 5 HOH B 65 297 297 HOH HOH . 
H 5 HOH B 66 298 298 HOH HOH . 
H 5 HOH B 67 299 299 HOH HOH . 
H 5 HOH B 68 300 300 HOH HOH . 
H 5 HOH B 69 301 301 HOH HOH . 
H 5 HOH B 70 302 302 HOH HOH . 
H 5 HOH B 71 303 303 HOH HOH . 
H 5 HOH B 72 304 304 HOH HOH . 
H 5 HOH B 73 305 305 HOH HOH . 
H 5 HOH B 74 306 306 HOH HOH . 
H 5 HOH B 75 307 307 HOH HOH . 
H 5 HOH B 76 308 308 HOH HOH . 
H 5 HOH B 77 309 309 HOH HOH . 
H 5 HOH B 78 310 310 HOH HOH . 
H 5 HOH B 79 311 311 HOH HOH . 
H 5 HOH B 80 312 312 HOH HOH . 
H 5 HOH B 81 313 313 HOH HOH . 
H 5 HOH B 82 314 314 HOH HOH . 
H 5 HOH B 83 315 315 HOH HOH . 
H 5 HOH B 84 316 316 HOH HOH . 
H 5 HOH B 85 317 317 HOH HOH . 
H 5 HOH B 86 318 318 HOH HOH . 
H 5 HOH B 87 319 319 HOH HOH . 
H 5 HOH B 88 320 320 HOH HOH . 
H 5 HOH B 89 321 321 HOH HOH . 
H 5 HOH B 90 322 322 HOH HOH . 
H 5 HOH B 91 323 323 HOH HOH . 
H 5 HOH B 92 324 324 HOH HOH . 
H 5 HOH B 93 325 325 HOH HOH . 
H 5 HOH B 94 326 326 HOH HOH . 
H 5 HOH B 95 327 327 HOH HOH . 
H 5 HOH B 96 328 328 HOH HOH . 
H 5 HOH B 97 329 329 HOH HOH . 
H 5 HOH B 98 330 330 HOH HOH . 
H 5 HOH B 99 331 331 HOH HOH . 
H 5 HOH B 100 332 332 HOH HOH . 
H 5 HOH B 101 333 333 HOH HOH . 
H 5 HOH B 102 334 334 HOH HOH . 
H 5 HOH B 103 335 335 HOH HOH . 
H 5 HOH B 104 336 336 HOH HOH . 
H 5 HOH B 105 337 337 HOH HOH . 
H 5 HOH B 106 338 338 HOH HOH . 
H 5 HOH B 107 339 339 HOH HOH . 
H 5 HOH B 108 340 340 HOH HOH . 
H 5 HOH B 109 341 341 HOH HOH . 
H 5 HOH B 110 342 342 HOH HOH . 
H 5 HOH B 111 343 343 HOH HOH . 
H 5 HOH B 112 344 344 HOH HOH . 
H 5 HOH B 113 345 345 HOH HOH . 
H 5 HOH B 114 346 346 HOH HOH . 
H 5 HOH B 115 347 347 HOH HOH . 
H 5 HOH B 116 348 348 HOH HOH . 
H 5 HOH B 117 349 349 HOH HOH . 
H 5 HOH B 118 350 350 HOH HOH . 
H 5 HOH B 119 351 351 HOH HOH . 
H 5 HOH B 120 352 352 HOH HOH . 
H 5 HOH B 121 353 353 HOH HOH . 
H 5 HOH B 122 354 354 HOH HOH . 
H 5 HOH B 123 355 355 HOH HOH . 
H 5 HOH B 124 356 356 HOH HOH . 
H 5 HOH B 125 357 357 HOH HOH . 
H 5 HOH B 126 358 358 HOH HOH . 
H 5 HOH B 127 359 359 HOH HOH . 
H 5 HOH B 128 360 360 HOH HOH . 
H 5 HOH B 129 361 361 HOH HOH . 
H 5 HOH B 130 362 362 HOH HOH . 
H 5 HOH B 131 363 363 HOH HOH . 
H 5 HOH B 132 364 364 HOH HOH . 
H 5 HOH B 133 365 365 HOH HOH . 
H 5 HOH B 134 366 366 HOH HOH . 
H 5 HOH B 135 367 367 HOH HOH . 
H 5 HOH B 136 368 368 HOH HOH . 
H 5 HOH B 137 369 369 HOH HOH . 
H 5 HOH B 138 370 370 HOH HOH . 
H 5 HOH B 139 371 371 HOH HOH . 
H 5 HOH B 140 372 372 HOH HOH . 
H 5 HOH B 141 373 373 HOH HOH . 
H 5 HOH B 142 374 374 HOH HOH . 
H 5 HOH B 143 375 375 HOH HOH . 
H 5 HOH B 144 376 376 HOH HOH . 
H 5 HOH B 145 377 377 HOH HOH . 
H 5 HOH B 146 378 378 HOH HOH . 
H 5 HOH B 147 379 379 HOH HOH . 
H 5 HOH B 148 380 380 HOH HOH . 
H 5 HOH B 149 381 381 HOH HOH . 
H 5 HOH B 150 382 382 HOH HOH . 
H 5 HOH B 151 383 383 HOH HOH . 
H 5 HOH B 152 384 384 HOH HOH . 
H 5 HOH B 153 385 385 HOH HOH . 
H 5 HOH B 154 386 386 HOH HOH . 
H 5 HOH B 155 387 387 HOH HOH . 
H 5 HOH B 156 388 388 HOH HOH . 
H 5 HOH B 157 389 389 HOH HOH . 
H 5 HOH B 158 390 390 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 54.906 12.541 56.856 1 48.3 ? C1 EDO 1001 B 1 
HETATM 2 O O1 EDO . . . D 4 55.97 13.273 56.239 1 48.13 ? O1 EDO 1001 B 1 
HETATM 3 C C2 EDO . . . D 4 54.787 12.902 58.332 1 47.95 ? C2 EDO 1001 B 1 
HETATM 4 O O2 EDO . . . D 4 55.957 12.5 59.054 1 49.43 ? O2 EDO 1001 B 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           4 
#