data_3NMB # _model_server_result.job_id kj4dv4ia5YaO3O30-cZFPA _model_server_result.datetime_utc '2024-11-05 00:55:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":8}' # _entry.id 3NMB # _exptl.entry_id 3NMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NMB _cell.length_a 99.88 _cell.length_b 99.88 _cell.length_c 94.722 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 161 A ASP 189 1_555 A N MSE 162 A MSE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 162 A MSE 190 1_555 A N ILE 163 A ILE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C ILE 181 A ILE 209 1_555 A N MSE 182 A MSE 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 182 A MSE 210 1_555 A N VAL 183 A VAL 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C ASP 209 A ASP 237 1_555 A N MSE 210 A MSE 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 A C MSE 210 A MSE 238 1_555 A N LEU 211 A LEU 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 B NA NA . A NA 1 1_555 A OD1 ASN 104 A ASN 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc2 B NA NA . A NA 1 1_555 A O SER 105 A SER 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 B NA NA . A NA 1 1_555 A OE2 GLU 134 A GLU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc4 B NA NA . A NA 1 1_555 A OE1 GLN 136 A GLN 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc5 B NA NA . A NA 1 1_555 A OE1 GLN 243 A GLN 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc6 B NA NA . A NA 1 1_555 S O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3NMB _atom_sites.fract_transf_matrix[1][1] 0.010012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1 1 NA NA . C 3 PEG A 1 2 2 PEG PEG . D 3 PEG A 1 3 3 PEG PEG . E 4 EDO A 1 4 4 EDO EDO . F 4 EDO A 1 5 5 EDO EDO . G 4 EDO A 1 6 6 EDO EDO . H 4 EDO A 1 7 7 EDO EDO . I 4 EDO A 1 8 8 EDO EDO . J 4 EDO A 1 9 9 EDO EDO . K 4 EDO A 1 10 10 EDO EDO . L 4 EDO A 1 11 11 EDO EDO . M 4 EDO A 1 12 12 EDO EDO . N 4 EDO A 1 13 13 EDO EDO . O 4 EDO A 1 14 14 EDO EDO . P 4 EDO A 1 15 15 EDO EDO . Q 4 EDO A 1 16 16 EDO EDO . R 4 EDO A 1 17 17 EDO EDO . S 5 HOH A 1 18 18 HOH HOH . S 5 HOH A 2 19 19 HOH HOH . S 5 HOH A 3 20 20 HOH HOH . S 5 HOH A 4 21 21 HOH HOH . S 5 HOH A 5 22 22 HOH HOH . S 5 HOH A 6 23 23 HOH HOH . S 5 HOH A 7 24 24 HOH HOH . S 5 HOH A 8 25 25 HOH HOH . S 5 HOH A 9 26 26 HOH HOH . S 5 HOH A 10 27 27 HOH HOH . S 5 HOH A 11 28 28 HOH HOH . S 5 HOH A 12 289 29 HOH HOH . S 5 HOH A 13 290 30 HOH HOH . S 5 HOH A 14 291 31 HOH HOH . S 5 HOH A 15 292 32 HOH HOH . S 5 HOH A 16 293 33 HOH HOH . S 5 HOH A 17 294 34 HOH HOH . S 5 HOH A 18 295 35 HOH HOH . S 5 HOH A 19 296 36 HOH HOH . S 5 HOH A 20 297 37 HOH HOH . S 5 HOH A 21 298 38 HOH HOH . S 5 HOH A 22 299 39 HOH HOH . S 5 HOH A 23 300 40 HOH HOH . S 5 HOH A 24 301 41 HOH HOH . S 5 HOH A 25 302 42 HOH HOH . S 5 HOH A 26 303 43 HOH HOH . S 5 HOH A 27 304 44 HOH HOH . S 5 HOH A 28 305 45 HOH HOH . S 5 HOH A 29 306 46 HOH HOH . S 5 HOH A 30 307 47 HOH HOH . S 5 HOH A 31 308 48 HOH HOH . S 5 HOH A 32 309 49 HOH HOH . S 5 HOH A 33 310 50 HOH HOH . S 5 HOH A 34 311 51 HOH HOH . S 5 HOH A 35 312 52 HOH HOH . S 5 HOH A 36 313 53 HOH HOH . S 5 HOH A 37 314 54 HOH HOH . S 5 HOH A 38 315 55 HOH HOH . S 5 HOH A 39 316 56 HOH HOH . S 5 HOH A 40 317 57 HOH HOH . S 5 HOH A 41 318 58 HOH HOH . S 5 HOH A 42 319 59 HOH HOH . S 5 HOH A 43 320 60 HOH HOH . S 5 HOH A 44 321 61 HOH HOH . S 5 HOH A 45 322 62 HOH HOH . S 5 HOH A 46 323 63 HOH HOH . S 5 HOH A 47 324 64 HOH HOH . S 5 HOH A 48 325 65 HOH HOH . S 5 HOH A 49 326 66 HOH HOH . S 5 HOH A 50 327 67 HOH HOH . S 5 HOH A 51 328 68 HOH HOH . S 5 HOH A 52 329 69 HOH HOH . S 5 HOH A 53 330 70 HOH HOH . S 5 HOH A 54 331 71 HOH HOH . S 5 HOH A 55 332 72 HOH HOH . S 5 HOH A 56 333 73 HOH HOH . S 5 HOH A 57 334 74 HOH HOH . S 5 HOH A 58 335 75 HOH HOH . S 5 HOH A 59 336 76 HOH HOH . S 5 HOH A 60 337 77 HOH HOH . S 5 HOH A 61 338 78 HOH HOH . S 5 HOH A 62 339 79 HOH HOH . S 5 HOH A 63 340 80 HOH HOH . S 5 HOH A 64 341 81 HOH HOH . S 5 HOH A 65 342 82 HOH HOH . S 5 HOH A 66 343 83 HOH HOH . S 5 HOH A 67 344 84 HOH HOH . S 5 HOH A 68 345 85 HOH HOH . S 5 HOH A 69 346 86 HOH HOH . S 5 HOH A 70 347 87 HOH HOH . S 5 HOH A 71 348 88 HOH HOH . S 5 HOH A 72 349 89 HOH HOH . S 5 HOH A 73 350 90 HOH HOH . S 5 HOH A 74 351 91 HOH HOH . S 5 HOH A 75 352 92 HOH HOH . S 5 HOH A 76 353 93 HOH HOH . S 5 HOH A 77 354 94 HOH HOH . S 5 HOH A 78 355 95 HOH HOH . S 5 HOH A 79 356 96 HOH HOH . S 5 HOH A 80 357 97 HOH HOH . S 5 HOH A 81 358 98 HOH HOH . S 5 HOH A 82 359 99 HOH HOH . S 5 HOH A 83 360 100 HOH HOH . S 5 HOH A 84 361 101 HOH HOH . S 5 HOH A 85 362 102 HOH HOH . S 5 HOH A 86 363 103 HOH HOH . S 5 HOH A 87 364 104 HOH HOH . S 5 HOH A 88 365 105 HOH HOH . S 5 HOH A 89 366 106 HOH HOH . S 5 HOH A 90 367 107 HOH HOH . S 5 HOH A 91 368 108 HOH HOH . S 5 HOH A 92 369 109 HOH HOH . S 5 HOH A 93 370 110 HOH HOH . S 5 HOH A 94 371 111 HOH HOH . S 5 HOH A 95 372 112 HOH HOH . S 5 HOH A 96 373 113 HOH HOH . S 5 HOH A 97 374 114 HOH HOH . S 5 HOH A 98 375 115 HOH HOH . S 5 HOH A 99 376 116 HOH HOH . S 5 HOH A 100 377 117 HOH HOH . S 5 HOH A 101 378 118 HOH HOH . S 5 HOH A 102 379 119 HOH HOH . S 5 HOH A 103 380 120 HOH HOH . S 5 HOH A 104 381 121 HOH HOH . S 5 HOH A 105 382 122 HOH HOH . S 5 HOH A 106 383 123 HOH HOH . S 5 HOH A 107 384 124 HOH HOH . S 5 HOH A 108 385 125 HOH HOH . S 5 HOH A 109 386 126 HOH HOH . S 5 HOH A 110 387 127 HOH HOH . S 5 HOH A 111 388 128 HOH HOH . S 5 HOH A 112 389 129 HOH HOH . S 5 HOH A 113 390 130 HOH HOH . S 5 HOH A 114 391 131 HOH HOH . S 5 HOH A 115 392 132 HOH HOH . S 5 HOH A 116 393 133 HOH HOH . S 5 HOH A 117 394 134 HOH HOH . S 5 HOH A 118 395 135 HOH HOH . S 5 HOH A 119 396 136 HOH HOH . S 5 HOH A 120 397 137 HOH HOH . S 5 HOH A 121 398 138 HOH HOH . S 5 HOH A 122 399 139 HOH HOH . S 5 HOH A 123 400 140 HOH HOH . S 5 HOH A 124 401 141 HOH HOH . S 5 HOH A 125 402 142 HOH HOH . S 5 HOH A 126 403 143 HOH HOH . S 5 HOH A 127 404 144 HOH HOH . S 5 HOH A 128 405 145 HOH HOH . S 5 HOH A 129 406 146 HOH HOH . S 5 HOH A 130 407 147 HOH HOH . S 5 HOH A 131 408 148 HOH HOH . S 5 HOH A 132 409 149 HOH HOH . S 5 HOH A 133 410 150 HOH HOH . S 5 HOH A 134 411 151 HOH HOH . S 5 HOH A 135 412 152 HOH HOH . S 5 HOH A 136 413 153 HOH HOH . S 5 HOH A 137 414 154 HOH HOH . S 5 HOH A 138 415 155 HOH HOH . S 5 HOH A 139 416 156 HOH HOH . S 5 HOH A 140 417 157 HOH HOH . S 5 HOH A 141 418 158 HOH HOH . S 5 HOH A 142 419 159 HOH HOH . S 5 HOH A 143 420 160 HOH HOH . S 5 HOH A 144 421 161 HOH HOH . S 5 HOH A 145 422 162 HOH HOH . S 5 HOH A 146 423 163 HOH HOH . S 5 HOH A 147 424 164 HOH HOH . S 5 HOH A 148 425 165 HOH HOH . S 5 HOH A 149 426 166 HOH HOH . S 5 HOH A 150 427 167 HOH HOH . S 5 HOH A 151 428 168 HOH HOH . S 5 HOH A 152 429 169 HOH HOH . S 5 HOH A 153 430 170 HOH HOH . S 5 HOH A 154 431 171 HOH HOH . S 5 HOH A 155 432 172 HOH HOH . S 5 HOH A 156 433 173 HOH HOH . S 5 HOH A 157 434 174 HOH HOH . S 5 HOH A 158 435 175 HOH HOH . S 5 HOH A 159 436 176 HOH HOH . S 5 HOH A 160 437 177 HOH HOH . S 5 HOH A 161 438 178 HOH HOH . S 5 HOH A 162 439 179 HOH HOH . S 5 HOH A 163 440 180 HOH HOH . S 5 HOH A 164 441 181 HOH HOH . S 5 HOH A 165 442 182 HOH HOH . S 5 HOH A 166 443 183 HOH HOH . S 5 HOH A 167 444 184 HOH HOH . S 5 HOH A 168 445 185 HOH HOH . S 5 HOH A 169 446 186 HOH HOH . S 5 HOH A 170 447 187 HOH HOH . S 5 HOH A 171 448 188 HOH HOH . S 5 HOH A 172 449 189 HOH HOH . S 5 HOH A 173 450 190 HOH HOH . S 5 HOH A 174 451 191 HOH HOH . S 5 HOH A 175 452 192 HOH HOH . S 5 HOH A 176 453 193 HOH HOH . S 5 HOH A 177 454 194 HOH HOH . S 5 HOH A 178 455 195 HOH HOH . S 5 HOH A 179 456 196 HOH HOH . S 5 HOH A 180 457 197 HOH HOH . S 5 HOH A 181 458 198 HOH HOH . S 5 HOH A 182 459 199 HOH HOH . S 5 HOH A 183 460 200 HOH HOH . S 5 HOH A 184 461 201 HOH HOH . S 5 HOH A 185 462 202 HOH HOH . S 5 HOH A 186 463 203 HOH HOH . S 5 HOH A 187 464 204 HOH HOH . S 5 HOH A 188 465 205 HOH HOH . S 5 HOH A 189 466 206 HOH HOH . S 5 HOH A 190 467 207 HOH HOH . S 5 HOH A 191 468 208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 4 8.842 46.356 21.164 1 76.48 ? C1 EDO 8 A 1 HETATM 2 O O1 EDO . . . I 4 9.288 47.322 20.168 1 75.94 ? O1 EDO 8 A 1 HETATM 3 C C2 EDO . . . I 4 8.241 45.055 20.605 1 75.39 ? C2 EDO 8 A 1 HETATM 4 O O2 EDO . . . I 4 7.112 44.658 21.376 1 72.23 ? O2 EDO 8 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #