data_3NMJ # _model_server_result.job_id -HZOI-Mt_vGqpG9RNsay8w _model_server_result.datetime_utc '2024-11-12 20:54:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nmj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":151}' # _entry.id 3NMJ # _exptl.entry_id 3NMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 237.257 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-1,10-phenanthrolin-5-ylacetamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NMJ _cell.length_a 99.291 _cell.length_b 99.291 _cell.length_c 109.317 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,O 1 1 B,G,H,I,P 2 1 C,J,K,L 3 1 D,M,N,Q 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 L N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 7 A MET 7 1_555 E FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc2 A NE2 HIS 102 A HIS 102 1_555 E FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc3 O O HOH . A HOH 107 1_555 J NI NI . C NI 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc4 F NAJ PXX . A PXX 151 1_555 J NI NI . C NI 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 F NAK PXX . A PXX 151 1_555 J NI NI . C NI 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc6 B SD MET 7 B MET 7 1_555 G FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc7 B NE2 HIS 102 B HIS 102 1_555 G FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc8 H NAK PXX . B PXX 151 1_555 I NI NI . B NI 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc9 H NAJ PXX . B PXX 151 1_555 I NI NI . B NI 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc10 I NI NI . B NI 152 1_555 Q O HOH . D HOH 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc11 I NI NI . B NI 152 1_555 N NAK PXX . D PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc12 I NI NI . B NI 152 1_555 N NAJ PXX . D PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc13 C SD MET 7 C MET 7 1_555 K FE HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc14 C NE2 HIS 102 C HIS 102 1_555 K FE HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc15 L NAK PXX . C PXX 151 1_555 J NI NI . C NI 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc16 L NAJ PXX . C PXX 151 1_555 J NI NI . C NI 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc17 D SD MET 7 D MET 7 1_555 M FE HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc18 D NE2 HIS 102 D HIS 102 1_555 M FE HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? # _chem_comp.formula 'C14 H11 N3 O' _chem_comp.formula_weight 237.257 _chem_comp.id PXX _chem_comp.mon_nstd_flag . _chem_comp.name N-1,10-phenanthrolin-5-ylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAM PXX sing 359 n n CAM OAB PXX doub 360 n n CAM NAL PXX sing 361 n n NAL CAN PXX sing 362 n n CAN CAP PXX doub 363 n y CAN CAI PXX sing 364 n y CAP CAH PXX sing 365 n y CAP CAR PXX sing 366 n y CAH CAD PXX doub 367 n y CAD CAF PXX sing 368 n y CAF NAK PXX doub 369 n y NAK CAR PXX sing 370 n y CAR CAQ PXX doub 371 n y CAQ NAJ PXX sing 372 n y CAQ CAO PXX sing 373 n y NAJ CAE PXX doub 374 n y CAE CAC PXX sing 375 n y CAC CAG PXX doub 376 n y CAG CAO PXX sing 377 n y CAO CAI PXX doub 378 n y CAA HAA PXX sing 379 n n CAA HAAA PXX sing 380 n n CAA HAAB PXX sing 381 n n NAL HNAL PXX sing 382 n n CAH HAH PXX sing 383 n n CAD HAD PXX sing 384 n n CAF HAF PXX sing 385 n n CAE HAE PXX sing 386 n n CAC HAC PXX sing 387 n n CAG HAG PXX sing 388 n n CAI HAI PXX sing 389 n n # _atom_sites.entry_id 3NMJ _atom_sites.fract_transf_matrix[1][1] 0.010071 _atom_sites.fract_transf_matrix[1][2] 0.005815 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 150 150 HEM HEM . F 3 PXX A 1 151 151 PXX PXX . G 2 HEM B 1 150 150 HEM HEM . H 3 PXX B 1 151 151 PXX PXX . I 4 NI B 1 152 152 NI NI . J 4 NI C 1 152 152 NI NI . K 2 HEM C 1 150 150 HEM HEM . L 3 PXX C 1 151 151 PXX PXX . M 2 HEM D 1 150 150 HEM HEM . N 3 PXX D 1 151 151 PXX PXX . O 5 HOH A 1 107 1 HOH HOH . P 5 HOH B 1 107 5 HOH HOH . Q 5 HOH D 1 107 2 HOH HOH . Q 5 HOH D 2 108 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA PXX . . . L 3 19.523 -44.076 28.36 1 46.29 ? CAA PXX 151 C 1 HETATM 2 C CAM PXX . . . L 3 20.604 -44.664 27.495 1 50.34 ? CAM PXX 151 C 1 HETATM 3 O OAB PXX . . . L 3 21.786 -44.381 27.658 1 55.86 ? OAB PXX 151 C 1 HETATM 4 N NAL PXX . . . L 3 20.21 -45.473 26.508 1 45.93 ? NAL PXX 151 C 1 HETATM 5 C CAN PXX . . . L 3 21.168 -46.023 25.633 1 41.54 ? CAN PXX 151 C 1 HETATM 6 C CAP PXX . . . L 3 21.241 -45.609 24.293 1 39.14 ? CAP PXX 151 C 1 HETATM 7 C CAH PXX . . . L 3 20.351 -44.669 23.783 1 39.09 ? CAH PXX 151 C 1 HETATM 8 C CAD PXX . . . L 3 20.486 -44.248 22.466 1 39.3 ? CAD PXX 151 C 1 HETATM 9 C CAF PXX . . . L 3 21.489 -44.792 21.674 1 39.81 ? CAF PXX 151 C 1 HETATM 10 N NAK PXX . . . L 3 22.313 -45.722 22.163 1 38.6 ? NAK PXX 151 C 1 HETATM 11 C CAR PXX . . . L 3 22.207 -46.137 23.444 1 36.38 ? CAR PXX 151 C 1 HETATM 12 C CAQ PXX . . . L 3 23.092 -47.089 23.923 1 36.04 ? CAQ PXX 151 C 1 HETATM 13 N NAJ PXX . . . L 3 24.022 -47.598 23.078 1 38.76 ? NAJ PXX 151 C 1 HETATM 14 C CAE PXX . . . L 3 24.903 -48.512 23.517 1 39.7 ? CAE PXX 151 C 1 HETATM 15 C CAC PXX . . . L 3 24.868 -48.964 24.84 1 39.09 ? CAC PXX 151 C 1 HETATM 16 C CAG PXX . . . L 3 23.901 -48.477 25.718 1 35.14 ? CAG PXX 151 C 1 HETATM 17 C CAO PXX . . . L 3 23.018 -47.508 25.256 1 36.01 ? CAO PXX 151 C 1 HETATM 18 C CAI PXX . . . L 3 22.062 -46.975 26.113 1 34.59 ? CAI PXX 151 C 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #