data_3NMN # _model_server_result.job_id lS-PfSIGt6Cgg68-1x7ocg _model_server_result.datetime_utc '2024-11-15 11:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 3NMN # _exptl.entry_id 3NMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.256 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 115.78 _cell.angle_beta 95.43 _cell.angle_gamma 105.6 _cell.entry_id 3NMN _cell.length_a 59.978 _cell.length_b 66.71 _cell.length_c 72.598 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 152 D CYS 267 1_555 D SG CYS 244 D CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc1 L O HOH . B HOH 55 1_555 F MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc2 B OD2 ASP 62 B ASP 177 1_555 F MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc3 B OD2 ASP 62 B ASP 177 1_555 G MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc4 B OD1 ASP 146 B ASP 261 1_555 G MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc5 B OD1 ASP 232 B ASP 347 1_555 F MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc6 B OD1 ASP 298 B ASP 413 1_555 F MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc7 D OD2 ASP 62 D ASP 177 1_555 I MG MG . D MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc8 D OD2 ASP 62 D ASP 177 1_555 J MG MG . D MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc9 D OD1 ASP 146 D ASP 261 1_555 I MG MG . D MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc10 D OD2 ASP 232 D ASP 347 1_555 J MG MG . D MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'C16 H13 Br N2 O2 S' _chem_comp.formula_weight 377.256 _chem_comp.id PYV _chem_comp.mon_nstd_flag . _chem_comp.name 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Pyrabactin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S N1 PYV sing 277 n n S O1 PYV doub 278 n n S O2 PYV doub 279 n n S C4 PYV sing 280 n n BR C1 PYV sing 281 n n C1 C2 PYV doub 282 n y C1 C6 PYV sing 283 n y N1 C11 PYV sing 284 n n C2 C3 PYV sing 285 n y C2 C10 PYV sing 286 n y N2 C12 PYV doub 287 n y N2 C13 PYV sing 288 n y C3 C4 PYV doub 289 n y C3 C7 PYV sing 290 n y C4 C5 PYV sing 291 n y C5 C6 PYV doub 292 n y C7 C8 PYV doub 293 n y C8 C9 PYV sing 294 n y C9 C10 PYV doub 295 n y C11 C12 PYV sing 296 n n C12 C16 PYV sing 297 n y C13 C14 PYV doub 298 n y C14 C15 PYV sing 299 n y C15 C16 PYV doub 300 n y N1 HN1 PYV sing 301 n n C5 H5 PYV sing 302 n n C6 H6 PYV sing 303 n n C7 H7 PYV sing 304 n n C8 H8 PYV sing 305 n n C9 H9 PYV sing 306 n n C10 H10 PYV sing 307 n n C11 H11 PYV sing 308 n n C11 H11A PYV sing 309 n n C13 H13 PYV sing 310 n n C14 H14 PYV sing 311 n n C15 H15 PYV sing 312 n n C16 H16 PYV sing 313 n n # _atom_sites.entry_id 3NMN _atom_sites.fract_transf_matrix[1][1] 0.016673 _atom_sites.fract_transf_matrix[1][2] 0.004655 _atom_sites.fract_transf_matrix[1][3] 0.004355 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015564 _atom_sites.fract_transf_matrix[2][3] 0.008519 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PYV A 1 900 900 PYV PYV . F 4 MG B 1 998 998 MG MG . G 4 MG B 1 999 999 MG MG . H 3 PYV C 1 900 900 PYV PYV . I 4 MG D 1 998 998 MG MG . J 4 MG D 1 999 999 MG MG . K 5 HOH A 1 2 2 HOH HOH . K 5 HOH A 2 9 9 HOH HOH . K 5 HOH A 3 10 10 HOH HOH . K 5 HOH A 4 26 26 HOH HOH . K 5 HOH A 5 30 30 HOH HOH . K 5 HOH A 6 32 32 HOH HOH . K 5 HOH A 7 212 212 HOH HOH . K 5 HOH A 8 213 213 HOH HOH . K 5 HOH A 9 214 214 HOH HOH . K 5 HOH A 10 215 215 HOH HOH . K 5 HOH A 11 216 216 HOH HOH . K 5 HOH A 12 217 217 HOH HOH . K 5 HOH A 13 218 218 HOH HOH . K 5 HOH A 14 219 219 HOH HOH . K 5 HOH A 15 220 220 HOH HOH . K 5 HOH A 16 221 221 HOH HOH . K 5 HOH A 17 222 222 HOH HOH . K 5 HOH A 18 223 223 HOH HOH . K 5 HOH A 19 224 224 HOH HOH . K 5 HOH A 20 225 225 HOH HOH . K 5 HOH A 21 226 226 HOH HOH . K 5 HOH A 22 227 227 HOH HOH . K 5 HOH A 23 228 228 HOH HOH . K 5 HOH A 24 229 229 HOH HOH . K 5 HOH A 25 230 230 HOH HOH . K 5 HOH A 26 231 231 HOH HOH . K 5 HOH A 27 232 232 HOH HOH . K 5 HOH A 28 233 233 HOH HOH . K 5 HOH A 29 234 234 HOH HOH . K 5 HOH A 30 235 235 HOH HOH . K 5 HOH A 31 236 236 HOH HOH . L 5 HOH B 1 4 4 HOH HOH . L 5 HOH B 2 5 5 HOH HOH . L 5 HOH B 3 8 8 HOH HOH . L 5 HOH B 4 17 17 HOH HOH . L 5 HOH B 5 19 19 HOH HOH . L 5 HOH B 6 25 25 HOH HOH . L 5 HOH B 7 31 31 HOH HOH . L 5 HOH B 8 33 33 HOH HOH . L 5 HOH B 9 36 36 HOH HOH . L 5 HOH B 10 37 37 HOH HOH . L 5 HOH B 11 39 39 HOH HOH . L 5 HOH B 12 46 46 HOH HOH . L 5 HOH B 13 47 47 HOH HOH . L 5 HOH B 14 55 55 HOH HOH . L 5 HOH B 15 56 56 HOH HOH . L 5 HOH B 16 60 60 HOH HOH . L 5 HOH B 17 62 62 HOH HOH . L 5 HOH B 18 70 70 HOH HOH . L 5 HOH B 19 72 72 HOH HOH . L 5 HOH B 20 77 77 HOH HOH . L 5 HOH B 21 78 78 HOH HOH . L 5 HOH B 22 85 85 HOH HOH . L 5 HOH B 23 86 86 HOH HOH . L 5 HOH B 24 91 91 HOH HOH . L 5 HOH B 25 95 95 HOH HOH . L 5 HOH B 26 96 96 HOH HOH . L 5 HOH B 27 99 99 HOH HOH . L 5 HOH B 28 100 100 HOH HOH . L 5 HOH B 29 102 102 HOH HOH . L 5 HOH B 30 109 109 HOH HOH . L 5 HOH B 31 112 112 HOH HOH . L 5 HOH B 32 113 113 HOH HOH . L 5 HOH B 33 115 115 HOH HOH . L 5 HOH B 34 435 435 HOH HOH . L 5 HOH B 35 436 436 HOH HOH . L 5 HOH B 36 437 437 HOH HOH . L 5 HOH B 37 438 438 HOH HOH . L 5 HOH B 38 439 439 HOH HOH . L 5 HOH B 39 440 440 HOH HOH . L 5 HOH B 40 441 441 HOH HOH . L 5 HOH B 41 442 442 HOH HOH . L 5 HOH B 42 443 443 HOH HOH . L 5 HOH B 43 444 444 HOH HOH . L 5 HOH B 44 445 445 HOH HOH . L 5 HOH B 45 446 446 HOH HOH . M 5 HOH C 1 7 7 HOH HOH . M 5 HOH C 2 11 11 HOH HOH . M 5 HOH C 3 12 12 HOH HOH . M 5 HOH C 4 13 13 HOH HOH . M 5 HOH C 5 18 18 HOH HOH . M 5 HOH C 6 20 20 HOH HOH . M 5 HOH C 7 24 24 HOH HOH . M 5 HOH C 8 28 28 HOH HOH . M 5 HOH C 9 29 29 HOH HOH . M 5 HOH C 10 212 212 HOH HOH . M 5 HOH C 11 213 213 HOH HOH . M 5 HOH C 12 214 214 HOH HOH . M 5 HOH C 13 215 215 HOH HOH . M 5 HOH C 14 216 216 HOH HOH . M 5 HOH C 15 217 217 HOH HOH . M 5 HOH C 16 218 218 HOH HOH . M 5 HOH C 17 219 219 HOH HOH . M 5 HOH C 18 220 220 HOH HOH . M 5 HOH C 19 221 221 HOH HOH . M 5 HOH C 20 222 222 HOH HOH . M 5 HOH C 21 223 223 HOH HOH . M 5 HOH C 22 224 224 HOH HOH . M 5 HOH C 23 225 225 HOH HOH . M 5 HOH C 24 226 226 HOH HOH . M 5 HOH C 25 227 227 HOH HOH . M 5 HOH C 26 228 228 HOH HOH . M 5 HOH C 27 229 229 HOH HOH . M 5 HOH C 28 230 230 HOH HOH . M 5 HOH C 29 231 231 HOH HOH . M 5 HOH C 30 232 232 HOH HOH . M 5 HOH C 31 233 233 HOH HOH . M 5 HOH C 32 234 234 HOH HOH . M 5 HOH C 33 235 235 HOH HOH . M 5 HOH C 34 236 236 HOH HOH . M 5 HOH C 35 237 237 HOH HOH . M 5 HOH C 36 238 238 HOH HOH . M 5 HOH C 37 239 239 HOH HOH . M 5 HOH C 38 240 240 HOH HOH . M 5 HOH C 39 241 241 HOH HOH . M 5 HOH C 40 242 242 HOH HOH . N 5 HOH D 1 1 1 HOH HOH . N 5 HOH D 2 3 3 HOH HOH . N 5 HOH D 3 6 6 HOH HOH . N 5 HOH D 4 14 14 HOH HOH . N 5 HOH D 5 15 15 HOH HOH . N 5 HOH D 6 16 16 HOH HOH . N 5 HOH D 7 21 21 HOH HOH . N 5 HOH D 8 22 22 HOH HOH . N 5 HOH D 9 23 23 HOH HOH . N 5 HOH D 10 27 27 HOH HOH . N 5 HOH D 11 34 34 HOH HOH . N 5 HOH D 12 35 35 HOH HOH . N 5 HOH D 13 40 40 HOH HOH . N 5 HOH D 14 42 42 HOH HOH . N 5 HOH D 15 43 43 HOH HOH . N 5 HOH D 16 44 44 HOH HOH . N 5 HOH D 17 45 45 HOH HOH . N 5 HOH D 18 48 48 HOH HOH . N 5 HOH D 19 51 51 HOH HOH . N 5 HOH D 20 54 54 HOH HOH . N 5 HOH D 21 57 57 HOH HOH . N 5 HOH D 22 59 59 HOH HOH . N 5 HOH D 23 61 61 HOH HOH . N 5 HOH D 24 63 63 HOH HOH . N 5 HOH D 25 73 73 HOH HOH . N 5 HOH D 26 75 75 HOH HOH . N 5 HOH D 27 81 81 HOH HOH . N 5 HOH D 28 88 88 HOH HOH . N 5 HOH D 29 90 90 HOH HOH . N 5 HOH D 30 93 93 HOH HOH . N 5 HOH D 31 97 97 HOH HOH . N 5 HOH D 32 101 101 HOH HOH . N 5 HOH D 33 103 103 HOH HOH . N 5 HOH D 34 104 104 HOH HOH . N 5 HOH D 35 107 107 HOH HOH . N 5 HOH D 36 114 114 HOH HOH . N 5 HOH D 37 435 435 HOH HOH . N 5 HOH D 38 436 436 HOH HOH . N 5 HOH D 39 437 437 HOH HOH . N 5 HOH D 40 438 438 HOH HOH . N 5 HOH D 41 439 439 HOH HOH . N 5 HOH D 42 440 440 HOH HOH . N 5 HOH D 43 441 441 HOH HOH . N 5 HOH D 44 442 442 HOH HOH . N 5 HOH D 45 443 443 HOH HOH . N 5 HOH D 46 444 444 HOH HOH . N 5 HOH D 47 445 445 HOH HOH . N 5 HOH D 48 446 446 HOH HOH . N 5 HOH D 49 447 447 HOH HOH . N 5 HOH D 50 448 448 HOH HOH . N 5 HOH D 51 449 449 HOH HOH . N 5 HOH D 52 450 450 HOH HOH . N 5 HOH D 53 451 451 HOH HOH . N 5 HOH D 54 452 452 HOH HOH . N 5 HOH D 55 453 453 HOH HOH . N 5 HOH D 56 454 454 HOH HOH . N 5 HOH D 57 455 455 HOH HOH . N 5 HOH D 58 456 456 HOH HOH . N 5 HOH D 59 457 457 HOH HOH . N 5 HOH D 60 458 458 HOH HOH . N 5 HOH D 61 459 459 HOH HOH . N 5 HOH D 62 460 460 HOH HOH . N 5 HOH D 63 461 461 HOH HOH . N 5 HOH D 64 462 462 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S PYV . . . E 3 -7.455 -4.54 17.39 1 45.85 ? S PYV 900 A 1 HETATM 2 BR BR PYV . . . E 3 -8.273 -4.444 11.272 1 25.22 ? BR PYV 900 A 1 HETATM 3 C C1 PYV . . . E 3 -8.12 -4.6 12.78 1 36.97 ? C1 PYV 900 A 1 HETATM 4 N N1 PYV . . . E 3 -6.847 -5.897 18.021 1 45.13 ? N1 PYV 900 A 1 HETATM 5 O O1 PYV . . . E 3 -6.573 -3.444 17.738 1 44.45 ? O1 PYV 900 A 1 HETATM 6 C C2 PYV . . . E 3 -8.701 -5.63 13.627 1 39.8 ? C2 PYV 900 A 1 HETATM 7 N N2 PYV . . . E 3 -3.851 -6.727 16.236 1 49.02 ? N2 PYV 900 A 1 HETATM 8 O O2 PYV . . . E 3 -8.717 -4.397 18.111 1 44.23 ? O2 PYV 900 A 1 HETATM 9 C C3 PYV . . . E 3 -8.541 -5.659 15.155 1 38.57 ? C3 PYV 900 A 1 HETATM 10 C C4 PYV . . . E 3 -7.743 -4.657 15.78 1 41.9 ? C4 PYV 900 A 1 HETATM 11 C C5 PYV . . . E 3 -7.194 -3.688 14.912 1 43.54 ? C5 PYV 900 A 1 HETATM 12 C C6 PYV . . . E 3 -7.36 -3.657 13.508 1 43.15 ? C6 PYV 900 A 1 HETATM 13 C C7 PYV . . . E 3 -9.146 -6.699 15.878 1 34.85 ? C7 PYV 900 A 1 HETATM 14 C C8 PYV . . . E 3 -9.909 -7.685 15.242 1 35.28 ? C8 PYV 900 A 1 HETATM 15 C C9 PYV . . . E 3 -10.062 -7.657 13.855 1 36.33 ? C9 PYV 900 A 1 HETATM 16 C C10 PYV . . . E 3 -9.484 -6.642 13.06 1 37.76 ? C10 PYV 900 A 1 HETATM 17 C C11 PYV . . . E 3 -5.462 -6.231 18.006 1 46.03 ? C11 PYV 900 A 1 HETATM 18 C C12 PYV . . . E 3 -5.084 -6.939 16.71 1 46.98 ? C12 PYV 900 A 1 HETATM 19 C C13 PYV . . . E 3 -3.358 -7.294 15.114 1 46.92 ? C13 PYV 900 A 1 HETATM 20 C C14 PYV . . . E 3 -4.126 -8.178 14.405 1 45.48 ? C14 PYV 900 A 1 HETATM 21 C C15 PYV . . . E 3 -5.405 -8.45 14.881 1 47.02 ? C15 PYV 900 A 1 HETATM 22 C C16 PYV . . . E 3 -5.888 -7.819 16.031 1 45.49 ? C16 PYV 900 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #