data_3NMP # _model_server_result.job_id 3cPczFLzhPsL1M4LenwyUQ _model_server_result.datetime_utc '2024-11-15 09:54:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 3NMP # _exptl.entry_id 3NMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.256 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NMP _cell.length_a 62.084 _cell.length_b 105.571 _cell.length_c 182.901 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,G,H 1 1 C,F,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_354 -x-2,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -124.168 0 -91.4505 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C16 H13 Br N2 O2 S' _chem_comp.formula_weight 377.256 _chem_comp.id PYV _chem_comp.mon_nstd_flag . _chem_comp.name 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Pyrabactin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S N1 PYV sing 277 n n S O1 PYV doub 278 n n S O2 PYV doub 279 n n S C4 PYV sing 280 n n BR C1 PYV sing 281 n n C1 C2 PYV doub 282 n y C1 C6 PYV sing 283 n y N1 C11 PYV sing 284 n n C2 C3 PYV sing 285 n y C2 C10 PYV sing 286 n y N2 C12 PYV doub 287 n y N2 C13 PYV sing 288 n y C3 C4 PYV doub 289 n y C3 C7 PYV sing 290 n y C4 C5 PYV sing 291 n y C5 C6 PYV doub 292 n y C7 C8 PYV doub 293 n y C8 C9 PYV sing 294 n y C9 C10 PYV doub 295 n y C11 C12 PYV sing 296 n n C12 C16 PYV sing 297 n y C13 C14 PYV doub 298 n y C14 C15 PYV sing 299 n y C15 C16 PYV doub 300 n y N1 HN1 PYV sing 301 n n C5 H5 PYV sing 302 n n C6 H6 PYV sing 303 n n C7 H7 PYV sing 304 n n C8 H8 PYV sing 305 n n C9 H9 PYV sing 306 n n C10 H10 PYV sing 307 n n C11 H11 PYV sing 308 n n C11 H11A PYV sing 309 n n C13 H13 PYV sing 310 n n C14 H14 PYV sing 311 n n C15 H15 PYV sing 312 n n C16 H16 PYV sing 313 n n # _atom_sites.entry_id 3NMP _atom_sites.fract_transf_matrix[1][1] 0.016107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PYV A 1 900 900 PYV PYV . E 2 PYV B 1 900 900 PYV PYV . F 2 PYV C 1 900 900 PYV PYV . G 3 HOH A 1 8 8 HOH HOH . G 3 HOH A 2 9 9 HOH HOH . G 3 HOH A 3 190 190 HOH HOH . G 3 HOH A 4 191 191 HOH HOH . G 3 HOH A 5 192 192 HOH HOH . G 3 HOH A 6 193 193 HOH HOH . G 3 HOH A 7 194 194 HOH HOH . G 3 HOH A 8 195 195 HOH HOH . G 3 HOH A 9 196 196 HOH HOH . G 3 HOH A 10 197 197 HOH HOH . G 3 HOH A 11 198 198 HOH HOH . G 3 HOH A 12 199 199 HOH HOH . G 3 HOH A 13 200 200 HOH HOH . G 3 HOH A 14 201 201 HOH HOH . G 3 HOH A 15 202 202 HOH HOH . G 3 HOH A 16 203 203 HOH HOH . G 3 HOH A 17 204 204 HOH HOH . G 3 HOH A 18 205 205 HOH HOH . G 3 HOH A 19 206 206 HOH HOH . G 3 HOH A 20 207 207 HOH HOH . G 3 HOH A 21 208 208 HOH HOH . G 3 HOH A 22 209 209 HOH HOH . G 3 HOH A 23 210 210 HOH HOH . G 3 HOH A 24 211 211 HOH HOH . G 3 HOH A 25 212 212 HOH HOH . G 3 HOH A 26 213 213 HOH HOH . G 3 HOH A 27 214 214 HOH HOH . G 3 HOH A 28 215 215 HOH HOH . G 3 HOH A 29 216 216 HOH HOH . G 3 HOH A 30 217 217 HOH HOH . G 3 HOH A 31 218 218 HOH HOH . G 3 HOH A 32 219 219 HOH HOH . G 3 HOH A 33 220 220 HOH HOH . G 3 HOH A 34 221 221 HOH HOH . G 3 HOH A 35 222 222 HOH HOH . G 3 HOH A 36 223 223 HOH HOH . G 3 HOH A 37 224 224 HOH HOH . G 3 HOH A 38 225 225 HOH HOH . G 3 HOH A 39 226 226 HOH HOH . G 3 HOH A 40 227 227 HOH HOH . G 3 HOH A 41 228 228 HOH HOH . G 3 HOH A 42 229 229 HOH HOH . G 3 HOH A 43 230 230 HOH HOH . G 3 HOH A 44 231 231 HOH HOH . G 3 HOH A 45 232 232 HOH HOH . G 3 HOH A 46 233 233 HOH HOH . G 3 HOH A 47 234 234 HOH HOH . G 3 HOH A 48 235 235 HOH HOH . G 3 HOH A 49 236 236 HOH HOH . G 3 HOH A 50 237 237 HOH HOH . G 3 HOH A 51 238 238 HOH HOH . G 3 HOH A 52 239 239 HOH HOH . G 3 HOH A 53 240 240 HOH HOH . G 3 HOH A 54 241 241 HOH HOH . G 3 HOH A 55 242 242 HOH HOH . G 3 HOH A 56 243 243 HOH HOH . G 3 HOH A 57 244 244 HOH HOH . G 3 HOH A 58 245 245 HOH HOH . G 3 HOH A 59 246 246 HOH HOH . G 3 HOH A 60 247 247 HOH HOH . G 3 HOH A 61 248 248 HOH HOH . G 3 HOH A 62 249 249 HOH HOH . G 3 HOH A 63 250 250 HOH HOH . H 3 HOH B 1 1 1 HOH HOH . H 3 HOH B 2 2 2 HOH HOH . H 3 HOH B 3 3 3 HOH HOH . H 3 HOH B 4 4 4 HOH HOH . H 3 HOH B 5 5 5 HOH HOH . H 3 HOH B 6 6 6 HOH HOH . H 3 HOH B 7 190 190 HOH HOH . H 3 HOH B 8 191 191 HOH HOH . H 3 HOH B 9 192 192 HOH HOH . H 3 HOH B 10 193 193 HOH HOH . H 3 HOH B 11 194 194 HOH HOH . H 3 HOH B 12 195 195 HOH HOH . H 3 HOH B 13 196 196 HOH HOH . H 3 HOH B 14 197 197 HOH HOH . H 3 HOH B 15 198 198 HOH HOH . H 3 HOH B 16 199 199 HOH HOH . H 3 HOH B 17 200 200 HOH HOH . H 3 HOH B 18 201 201 HOH HOH . H 3 HOH B 19 202 202 HOH HOH . H 3 HOH B 20 203 203 HOH HOH . H 3 HOH B 21 204 204 HOH HOH . H 3 HOH B 22 205 205 HOH HOH . H 3 HOH B 23 206 206 HOH HOH . H 3 HOH B 24 207 207 HOH HOH . H 3 HOH B 25 208 208 HOH HOH . H 3 HOH B 26 209 209 HOH HOH . H 3 HOH B 27 210 210 HOH HOH . H 3 HOH B 28 211 211 HOH HOH . H 3 HOH B 29 212 212 HOH HOH . H 3 HOH B 30 213 213 HOH HOH . H 3 HOH B 31 214 214 HOH HOH . H 3 HOH B 32 215 215 HOH HOH . H 3 HOH B 33 216 216 HOH HOH . H 3 HOH B 34 217 217 HOH HOH . H 3 HOH B 35 218 218 HOH HOH . H 3 HOH B 36 219 219 HOH HOH . H 3 HOH B 37 220 220 HOH HOH . H 3 HOH B 38 221 221 HOH HOH . H 3 HOH B 39 222 222 HOH HOH . H 3 HOH B 40 223 223 HOH HOH . H 3 HOH B 41 224 224 HOH HOH . H 3 HOH B 42 225 225 HOH HOH . H 3 HOH B 43 226 226 HOH HOH . H 3 HOH B 44 227 227 HOH HOH . H 3 HOH B 45 228 228 HOH HOH . H 3 HOH B 46 229 229 HOH HOH . H 3 HOH B 47 230 230 HOH HOH . H 3 HOH B 48 231 231 HOH HOH . H 3 HOH B 49 232 232 HOH HOH . H 3 HOH B 50 233 233 HOH HOH . H 3 HOH B 51 234 234 HOH HOH . H 3 HOH B 52 235 235 HOH HOH . H 3 HOH B 53 236 236 HOH HOH . H 3 HOH B 54 237 237 HOH HOH . H 3 HOH B 55 238 238 HOH HOH . H 3 HOH B 56 239 239 HOH HOH . H 3 HOH B 57 240 240 HOH HOH . H 3 HOH B 58 241 241 HOH HOH . H 3 HOH B 59 242 242 HOH HOH . H 3 HOH B 60 243 243 HOH HOH . H 3 HOH B 61 244 244 HOH HOH . H 3 HOH B 62 245 245 HOH HOH . H 3 HOH B 63 246 246 HOH HOH . H 3 HOH B 64 247 247 HOH HOH . H 3 HOH B 65 248 248 HOH HOH . H 3 HOH B 66 249 249 HOH HOH . H 3 HOH B 67 250 250 HOH HOH . H 3 HOH B 68 251 251 HOH HOH . H 3 HOH B 69 252 252 HOH HOH . H 3 HOH B 70 253 253 HOH HOH . H 3 HOH B 71 254 254 HOH HOH . H 3 HOH B 72 255 255 HOH HOH . H 3 HOH B 73 256 256 HOH HOH . H 3 HOH B 74 257 257 HOH HOH . H 3 HOH B 75 258 258 HOH HOH . H 3 HOH B 76 259 259 HOH HOH . H 3 HOH B 77 260 260 HOH HOH . H 3 HOH B 78 261 261 HOH HOH . H 3 HOH B 79 262 262 HOH HOH . H 3 HOH B 80 263 263 HOH HOH . H 3 HOH B 81 264 264 HOH HOH . H 3 HOH B 82 265 265 HOH HOH . H 3 HOH B 83 266 266 HOH HOH . H 3 HOH B 84 267 267 HOH HOH . H 3 HOH B 85 268 268 HOH HOH . H 3 HOH B 86 269 269 HOH HOH . H 3 HOH B 87 270 270 HOH HOH . H 3 HOH B 88 271 271 HOH HOH . H 3 HOH B 89 272 272 HOH HOH . H 3 HOH B 90 273 273 HOH HOH . H 3 HOH B 91 274 274 HOH HOH . H 3 HOH B 92 275 275 HOH HOH . H 3 HOH B 93 276 276 HOH HOH . H 3 HOH B 94 277 277 HOH HOH . H 3 HOH B 95 278 278 HOH HOH . H 3 HOH B 96 279 279 HOH HOH . H 3 HOH B 97 280 280 HOH HOH . H 3 HOH B 98 281 281 HOH HOH . H 3 HOH B 99 282 282 HOH HOH . H 3 HOH B 100 283 283 HOH HOH . H 3 HOH B 101 284 284 HOH HOH . I 3 HOH C 1 7 7 HOH HOH . I 3 HOH C 2 10 10 HOH HOH . I 3 HOH C 3 11 11 HOH HOH . I 3 HOH C 4 190 190 HOH HOH . I 3 HOH C 5 191 191 HOH HOH . I 3 HOH C 6 192 192 HOH HOH . I 3 HOH C 7 193 193 HOH HOH . I 3 HOH C 8 194 194 HOH HOH . I 3 HOH C 9 195 195 HOH HOH . I 3 HOH C 10 196 196 HOH HOH . I 3 HOH C 11 197 197 HOH HOH . I 3 HOH C 12 198 198 HOH HOH . I 3 HOH C 13 199 199 HOH HOH . I 3 HOH C 14 200 200 HOH HOH . I 3 HOH C 15 201 201 HOH HOH . I 3 HOH C 16 202 202 HOH HOH . I 3 HOH C 17 203 203 HOH HOH . I 3 HOH C 18 204 204 HOH HOH . I 3 HOH C 19 205 205 HOH HOH . I 3 HOH C 20 206 206 HOH HOH . I 3 HOH C 21 207 207 HOH HOH . I 3 HOH C 22 208 208 HOH HOH . I 3 HOH C 23 209 209 HOH HOH . I 3 HOH C 24 210 210 HOH HOH . I 3 HOH C 25 211 211 HOH HOH . I 3 HOH C 26 212 212 HOH HOH . I 3 HOH C 27 213 213 HOH HOH . I 3 HOH C 28 214 214 HOH HOH . I 3 HOH C 29 215 215 HOH HOH . I 3 HOH C 30 216 216 HOH HOH . I 3 HOH C 31 217 217 HOH HOH . I 3 HOH C 32 218 218 HOH HOH . I 3 HOH C 33 219 219 HOH HOH . I 3 HOH C 34 220 220 HOH HOH . I 3 HOH C 35 221 221 HOH HOH . I 3 HOH C 36 222 222 HOH HOH . I 3 HOH C 37 223 223 HOH HOH . I 3 HOH C 38 224 224 HOH HOH . I 3 HOH C 39 225 225 HOH HOH . I 3 HOH C 40 226 226 HOH HOH . I 3 HOH C 41 227 227 HOH HOH . I 3 HOH C 42 228 228 HOH HOH . I 3 HOH C 43 229 229 HOH HOH . I 3 HOH C 44 230 230 HOH HOH . I 3 HOH C 45 231 231 HOH HOH . I 3 HOH C 46 232 232 HOH HOH . I 3 HOH C 47 233 233 HOH HOH . I 3 HOH C 48 234 234 HOH HOH . I 3 HOH C 49 235 235 HOH HOH . I 3 HOH C 50 236 236 HOH HOH . I 3 HOH C 51 237 237 HOH HOH . I 3 HOH C 52 238 238 HOH HOH . I 3 HOH C 53 239 239 HOH HOH . I 3 HOH C 54 240 240 HOH HOH . I 3 HOH C 55 241 241 HOH HOH . I 3 HOH C 56 242 242 HOH HOH . I 3 HOH C 57 243 243 HOH HOH . I 3 HOH C 58 244 244 HOH HOH . I 3 HOH C 59 245 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S PYV . . . D 2 -23.103 2.106 -22.13 1 99.76 ? S PYV 900 A 1 HETATM 2 BR BR PYV . . . D 2 -20.347 1.735 -16.832 1 100.92 ? BR PYV 900 A 1 HETATM 3 C C1 PYV . . . D 2 -20.98 1.765 -18.183 1 98.69 ? C1 PYV 900 A 1 HETATM 4 N N1 PYV . . . D 2 -22.229 2.655 -23.372 1 98.9 ? N1 PYV 900 A 1 HETATM 5 O O1 PYV . . . D 2 -23.627 0.825 -22.525 1 99.53 ? O1 PYV 900 A 1 HETATM 6 C C2 PYV . . . D 2 -20.486 0.999 -19.231 1 99.95 ? C2 PYV 900 A 1 HETATM 7 N N2 PYV . . . D 2 -21.01 5.057 -21.324 1 98.23 ? N2 PYV 900 A 1 HETATM 8 O O2 PYV . . . D 2 -24.192 3.023 -21.896 1 100.01 ? O2 PYV 900 A 1 HETATM 9 C C3 PYV . . . D 2 -21.142 1.066 -20.582 1 99.66 ? C3 PYV 900 A 1 HETATM 10 C C4 PYV . . . D 2 -22.261 1.92 -20.755 1 99.53 ? C4 PYV 900 A 1 HETATM 11 C C5 PYV . . . D 2 -22.709 2.66 -19.649 1 99.33 ? C5 PYV 900 A 1 HETATM 12 C C6 PYV . . . D 2 -22.084 2.58 -18.408 1 100.72 ? C6 PYV 900 A 1 HETATM 13 C C7 PYV . . . D 2 -20.587 0.271 -21.602 1 98.49 ? C7 PYV 900 A 1 HETATM 14 C C8 PYV . . . D 2 -19.469 -0.547 -21.356 1 99.45 ? C8 PYV 900 A 1 HETATM 15 C C9 PYV . . . D 2 -18.878 -0.593 -20.099 1 97.71 ? C9 PYV 900 A 1 HETATM 16 C C10 PYV . . . D 2 -19.379 0.176 -19.045 1 98.2 ? C10 PYV 900 A 1 HETATM 17 C C11 PYV . . . D 2 -21.802 4.034 -23.443 1 98.06 ? C11 PYV 900 A 1 HETATM 18 C C12 PYV . . . D 2 -20.738 4.241 -22.384 1 97.75 ? C12 PYV 900 A 1 HETATM 19 C C13 PYV . . . D 2 -20.096 5.275 -20.352 1 99.02 ? C13 PYV 900 A 1 HETATM 20 C C14 PYV . . . D 2 -18.841 4.648 -20.403 1 97.43 ? C14 PYV 900 A 1 HETATM 21 C C15 PYV . . . D 2 -18.533 3.795 -21.475 1 97.85 ? C15 PYV 900 A 1 HETATM 22 C C16 PYV . . . D 2 -19.493 3.588 -22.479 1 98.53 ? C16 PYV 900 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #