data_3NMQ # _model_server_result.job_id wzurgmPWcRPtkVH0q_tlIg _model_server_result.datetime_utc '2024-11-09 02:13:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nmq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3NMQ # _exptl.entry_id 3NMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'synthetic molecule' _entity.formula_weight 413.901 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-{2-amino-4-chloro-7-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-methylpent-4-yn-2 -ol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NMQ _cell.length_a 66.515 _cell.length_b 90.048 _cell.length_c 95.182 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H24 Cl N5 O2' _chem_comp.formula_weight 413.901 _chem_comp.id 7PP _chem_comp.mon_nstd_flag . _chem_comp.name '5-{2-amino-4-chloro-7-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-methylpent-4-yn-2 -ol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms EC44 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CL 7PP sing 1 n n N5 C1 7PP sing 2 n y C2 C1 7PP doub 3 n y C21 N5 7PP doub 4 n y N4 C21 7PP sing 5 n n N3 C21 7PP sing 6 n y N4 HN4 7PP sing 7 n n N4 HN4A 7PP sing 8 n n N3 C20 7PP doub 9 n y N1 C20 7PP sing 10 n y C20 C2 7PP sing 11 n y C2 C3 7PP sing 12 n y C11 N1 7PP sing 13 n n N1 C10 7PP sing 14 n y C11 C12 7PP sing 15 n n C11 H11 7PP sing 16 n n C11 H11A 7PP sing 17 n n N2 C12 7PP sing 18 n y C12 C18 7PP doub 19 n y C18 C19 7PP sing 20 n n C18 C16 7PP sing 21 n y C19 H19 7PP sing 22 n n C19 H19A 7PP sing 23 n n C19 H19B 7PP sing 24 n n C14 C16 7PP doub 25 n y C16 O2 7PP sing 26 n n O2 C17 7PP sing 27 n n C17 H17 7PP sing 28 n n C17 H17A 7PP sing 29 n n C17 H17B 7PP sing 30 n n C13 C14 7PP sing 31 n y C14 C15 7PP sing 32 n n C15 H15 7PP sing 33 n n C15 H15A 7PP sing 34 n n C15 H15B 7PP sing 35 n n N2 C13 7PP doub 36 n y C13 H13 7PP sing 37 n n C10 C3 7PP doub 38 n y C10 H10 7PP sing 39 n n C3 C4 7PP sing 40 n n C4 C5 7PP trip 41 n n C5 C6 7PP sing 42 n n C6 C7 7PP sing 43 n n C6 H6 7PP sing 44 n n C6 H6A 7PP sing 45 n n C8 C7 7PP sing 46 n n C7 O1 7PP sing 47 n n C7 C9 7PP sing 48 n n C9 H9 7PP sing 49 n n C9 H9A 7PP sing 50 n n C9 H9B 7PP sing 51 n n C8 H8 7PP sing 52 n n C8 H8A 7PP sing 53 n n C8 H8B 7PP sing 54 n n O1 HO1 7PP sing 55 n n # _atom_sites.entry_id 3NMQ _atom_sites.fract_transf_matrix[1][1] 0.015034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7PP A 1 1 1 7PP 7PP . C 3 HOH A 1 241 241 HOH HOH . C 3 HOH A 2 242 242 HOH HOH . C 3 HOH A 3 243 243 HOH HOH . C 3 HOH A 4 244 244 HOH HOH . C 3 HOH A 5 245 245 HOH HOH . C 3 HOH A 6 246 246 HOH HOH . C 3 HOH A 7 247 247 HOH HOH . C 3 HOH A 8 248 248 HOH HOH . C 3 HOH A 9 249 249 HOH HOH . C 3 HOH A 10 250 250 HOH HOH . C 3 HOH A 11 251 251 HOH HOH . C 3 HOH A 12 252 252 HOH HOH . C 3 HOH A 13 253 253 HOH HOH . C 3 HOH A 14 254 254 HOH HOH . C 3 HOH A 15 255 255 HOH HOH . C 3 HOH A 16 256 256 HOH HOH . C 3 HOH A 17 257 257 HOH HOH . C 3 HOH A 18 258 258 HOH HOH . C 3 HOH A 19 259 259 HOH HOH . C 3 HOH A 20 260 260 HOH HOH . C 3 HOH A 21 261 261 HOH HOH . C 3 HOH A 22 262 262 HOH HOH . C 3 HOH A 23 263 263 HOH HOH . C 3 HOH A 24 264 264 HOH HOH . C 3 HOH A 25 265 265 HOH HOH . C 3 HOH A 26 266 266 HOH HOH . C 3 HOH A 27 267 267 HOH HOH . C 3 HOH A 28 268 268 HOH HOH . C 3 HOH A 29 269 269 HOH HOH . C 3 HOH A 30 270 270 HOH HOH . C 3 HOH A 31 271 271 HOH HOH . C 3 HOH A 32 272 272 HOH HOH . C 3 HOH A 33 273 273 HOH HOH . C 3 HOH A 34 274 274 HOH HOH . C 3 HOH A 35 275 275 HOH HOH . C 3 HOH A 36 276 276 HOH HOH . C 3 HOH A 37 277 277 HOH HOH . C 3 HOH A 38 278 278 HOH HOH . C 3 HOH A 39 279 279 HOH HOH . C 3 HOH A 40 280 280 HOH HOH . C 3 HOH A 41 281 281 HOH HOH . C 3 HOH A 42 282 282 HOH HOH . C 3 HOH A 43 283 283 HOH HOH . C 3 HOH A 44 284 284 HOH HOH . C 3 HOH A 45 285 285 HOH HOH . C 3 HOH A 46 286 286 HOH HOH . C 3 HOH A 47 287 287 HOH HOH . C 3 HOH A 48 288 288 HOH HOH . C 3 HOH A 49 289 289 HOH HOH . C 3 HOH A 50 290 290 HOH HOH . C 3 HOH A 51 291 291 HOH HOH . C 3 HOH A 52 292 292 HOH HOH . C 3 HOH A 53 293 293 HOH HOH . C 3 HOH A 54 294 294 HOH HOH . C 3 HOH A 55 295 295 HOH HOH . C 3 HOH A 56 296 296 HOH HOH . C 3 HOH A 57 297 297 HOH HOH . C 3 HOH A 58 298 298 HOH HOH . C 3 HOH A 59 299 299 HOH HOH . C 3 HOH A 60 300 300 HOH HOH . C 3 HOH A 61 301 301 HOH HOH . C 3 HOH A 62 302 302 HOH HOH . C 3 HOH A 63 303 303 HOH HOH . C 3 HOH A 64 304 304 HOH HOH . C 3 HOH A 65 305 305 HOH HOH . C 3 HOH A 66 306 306 HOH HOH . C 3 HOH A 67 307 307 HOH HOH . C 3 HOH A 68 308 308 HOH HOH . C 3 HOH A 69 309 309 HOH HOH . C 3 HOH A 70 310 310 HOH HOH . C 3 HOH A 71 311 311 HOH HOH . C 3 HOH A 72 312 312 HOH HOH . C 3 HOH A 73 313 313 HOH HOH . C 3 HOH A 74 314 314 HOH HOH . C 3 HOH A 75 315 315 HOH HOH . C 3 HOH A 76 316 316 HOH HOH . C 3 HOH A 77 317 317 HOH HOH . C 3 HOH A 78 318 318 HOH HOH . C 3 HOH A 79 319 319 HOH HOH . C 3 HOH A 80 320 320 HOH HOH . C 3 HOH A 81 321 321 HOH HOH . C 3 HOH A 82 322 322 HOH HOH . C 3 HOH A 83 323 323 HOH HOH . C 3 HOH A 84 324 324 HOH HOH . C 3 HOH A 85 325 325 HOH HOH . C 3 HOH A 86 326 326 HOH HOH . C 3 HOH A 87 327 327 HOH HOH . C 3 HOH A 88 328 328 HOH HOH . C 3 HOH A 89 329 329 HOH HOH . C 3 HOH A 90 330 330 HOH HOH . C 3 HOH A 91 331 331 HOH HOH . C 3 HOH A 92 332 332 HOH HOH . C 3 HOH A 93 333 333 HOH HOH . C 3 HOH A 94 334 334 HOH HOH . C 3 HOH A 95 335 335 HOH HOH . C 3 HOH A 96 336 336 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL 7PP . . . B 2 -1.008 9.18 28.085 1 44.66 ? CL 7PP 1 A 1 HETATM 2 C C1 7PP . . . B 2 -0.704 9.868 26.461 1 26.63 ? C1 7PP 1 A 1 HETATM 3 N N5 7PP . . . B 2 -1.683 10.44 25.76 1 28.68 ? N5 7PP 1 A 1 HETATM 4 C C21 7PP . . . B 2 -1.438 10.98 24.548 1 28.18 ? C21 7PP 1 A 1 HETATM 5 N N4 7PP . . . B 2 -2.457 11.535 23.854 1 28.69 ? N4 7PP 1 A 1 HETATM 6 N N3 7PP . . . B 2 -0.186 10.985 24.035 1 24.18 ? N3 7PP 1 A 1 HETATM 7 C C20 7PP . . . B 2 0.818 10.44 24.703 1 25.62 ? C20 7PP 1 A 1 HETATM 8 C C2 7PP . . . B 2 0.56 9.859 25.947 1 26.63 ? C2 7PP 1 A 1 HETATM 9 N N1 7PP . . . B 2 2.119 10.328 24.389 1 26.7 ? N1 7PP 1 A 1 HETATM 10 C C11 7PP . . . B 2 2.769 10.864 23.163 1 26.09 ? C11 7PP 1 A 1 HETATM 11 C C12 7PP . . . B 2 3.829 11.913 23.648 1 26.37 ? C12 7PP 1 A 1 HETATM 12 C C18 7PP . . . B 2 3.536 13.193 24.152 1 26.42 ? C18 7PP 1 A 1 HETATM 13 C C19 7PP . . . B 2 2.127 13.726 24.272 1 24.74 ? C19 7PP 1 A 1 HETATM 14 C C16 7PP . . . B 2 4.606 14.067 24.56 1 30.37 ? C16 7PP 1 A 1 HETATM 15 O O2 7PP . . . B 2 4.338 15.314 25.037 1 33.28 ? O2 7PP 1 A 1 HETATM 16 C C17 7PP . . . B 2 4.623 15.699 26.368 1 36.44 ? C17 7PP 1 A 1 HETATM 17 C C14 7PP . . . B 2 5.939 13.657 24.427 1 33.45 ? C14 7PP 1 A 1 HETATM 18 C C15 7PP . . . B 2 7.103 14.546 24.833 1 40.42 ? C15 7PP 1 A 1 HETATM 19 C C13 7PP . . . B 2 6.162 12.387 23.921 1 32.01 ? C13 7PP 1 A 1 HETATM 20 N N2 7PP . . . B 2 5.151 11.588 23.57 1 28.97 ? N2 7PP 1 A 1 HETATM 21 C C10 7PP . . . B 2 2.729 9.665 25.383 1 24 ? C10 7PP 1 A 1 HETATM 22 C C3 7PP . . . B 2 1.78 9.419 26.358 1 25.44 ? C3 7PP 1 A 1 HETATM 23 C C4 7PP . . . B 2 2.083 8.744 27.485 1 25.5 ? C4 7PP 1 A 1 HETATM 24 C C5 7PP . . . B 2 2.345 8.104 28.439 1 27.76 ? C5 7PP 1 A 1 HETATM 25 C C6 7PP . . . B 2 2.733 7.283 29.635 1 31.57 ? C6 7PP 1 A 1 HETATM 26 C C7 7PP . . . B 2 2.014 5.929 29.795 1 36.76 ? C7 7PP 1 A 1 HETATM 27 C C9 7PP . . . B 2 2.457 5.221 31.096 1 42.24 ? C9 7PP 1 A 1 HETATM 28 C C8 7PP . . . B 2 2.209 5.025 28.585 1 36.48 ? C8 7PP 1 A 1 HETATM 29 O O1 7PP . . . B 2 0.604 6.169 29.942 1 40.65 ? O1 7PP 1 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #