data_3NMT # _model_server_result.job_id B-l-R-aISFDpfEi-hf0pIQ _model_server_result.datetime_utc '2024-11-15 12:00:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":100}' # _entry.id 3NMT # _exptl.entry_id 3NMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NMT _cell.length_a 61.02 _cell.length_b 66.877 _cell.length_c 144.441 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I O HOH . B HOH 93 1_555 E MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc2 D MG MG . B MG 100 1_555 B OD2 ASP 73 B ASP 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc3 D MG MG . B MG 100 1_555 B OD1 ASP 262 B ASP 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc4 D MG MG . B MG 100 1_555 B OD2 ASP 262 B ASP 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc5 D MG MG . B MG 100 1_555 B OD1 ASP 322 B ASP 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc6 E MG MG . B MG 101 1_555 B OD1 ASP 73 B ASP 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc7 E MG MG . B MG 101 1_555 B O GLY 74 B GLY 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NMT _atom_sites.fract_transf_matrix[1][1] 0.016388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PYV A 1 900 900 PYV PYV . D 4 MG B 1 100 100 MG MG . E 4 MG B 1 101 101 MG MG . F 5 SO4 B 1 512 512 SO4 SO4 . G 5 SO4 B 1 513 513 SO4 SO4 . H 6 HOH A 1 3 3 HOH HOH . H 6 HOH A 2 4 4 HOH HOH . H 6 HOH A 3 5 5 HOH HOH . H 6 HOH A 4 6 6 HOH HOH . H 6 HOH A 5 7 7 HOH HOH . H 6 HOH A 6 190 190 HOH HOH . H 6 HOH A 7 191 191 HOH HOH . H 6 HOH A 8 192 192 HOH HOH . H 6 HOH A 9 193 193 HOH HOH . H 6 HOH A 10 194 194 HOH HOH . H 6 HOH A 11 195 195 HOH HOH . H 6 HOH A 12 196 196 HOH HOH . H 6 HOH A 13 197 197 HOH HOH . H 6 HOH A 14 198 198 HOH HOH . H 6 HOH A 15 199 199 HOH HOH . H 6 HOH A 16 200 200 HOH HOH . H 6 HOH A 17 201 201 HOH HOH . H 6 HOH A 18 202 202 HOH HOH . H 6 HOH A 19 203 203 HOH HOH . H 6 HOH A 20 204 204 HOH HOH . H 6 HOH A 21 205 205 HOH HOH . H 6 HOH A 22 206 206 HOH HOH . H 6 HOH A 23 207 207 HOH HOH . H 6 HOH A 24 208 208 HOH HOH . H 6 HOH A 25 209 209 HOH HOH . H 6 HOH A 26 210 210 HOH HOH . H 6 HOH A 27 211 211 HOH HOH . H 6 HOH A 28 212 212 HOH HOH . H 6 HOH A 29 213 213 HOH HOH . H 6 HOH A 30 214 214 HOH HOH . H 6 HOH A 31 215 215 HOH HOH . H 6 HOH A 32 216 216 HOH HOH . H 6 HOH A 33 217 217 HOH HOH . H 6 HOH A 34 218 218 HOH HOH . H 6 HOH A 35 219 219 HOH HOH . H 6 HOH A 36 220 220 HOH HOH . H 6 HOH A 37 221 221 HOH HOH . H 6 HOH A 38 222 222 HOH HOH . H 6 HOH A 39 223 223 HOH HOH . H 6 HOH A 40 224 224 HOH HOH . H 6 HOH A 41 225 225 HOH HOH . H 6 HOH A 42 226 226 HOH HOH . H 6 HOH A 43 227 227 HOH HOH . H 6 HOH A 44 228 228 HOH HOH . H 6 HOH A 45 229 229 HOH HOH . H 6 HOH A 46 230 230 HOH HOH . H 6 HOH A 47 231 231 HOH HOH . H 6 HOH A 48 232 232 HOH HOH . H 6 HOH A 49 233 233 HOH HOH . H 6 HOH A 50 234 234 HOH HOH . I 6 HOH B 1 1 1 HOH HOH . I 6 HOH B 2 2 2 HOH HOH . I 6 HOH B 3 8 8 HOH HOH . I 6 HOH B 4 9 9 HOH HOH . I 6 HOH B 5 10 10 HOH HOH . I 6 HOH B 6 11 11 HOH HOH . I 6 HOH B 7 13 13 HOH HOH . I 6 HOH B 8 15 15 HOH HOH . I 6 HOH B 9 16 16 HOH HOH . I 6 HOH B 10 18 18 HOH HOH . I 6 HOH B 11 19 19 HOH HOH . I 6 HOH B 12 21 21 HOH HOH . I 6 HOH B 13 22 22 HOH HOH . I 6 HOH B 14 25 25 HOH HOH . I 6 HOH B 15 27 27 HOH HOH . I 6 HOH B 16 29 29 HOH HOH . I 6 HOH B 17 30 30 HOH HOH . I 6 HOH B 18 31 31 HOH HOH . I 6 HOH B 19 32 32 HOH HOH . I 6 HOH B 20 34 34 HOH HOH . I 6 HOH B 21 35 35 HOH HOH . I 6 HOH B 22 37 37 HOH HOH . I 6 HOH B 23 38 38 HOH HOH . I 6 HOH B 24 40 40 HOH HOH . I 6 HOH B 25 42 42 HOH HOH . I 6 HOH B 26 45 45 HOH HOH . I 6 HOH B 27 46 46 HOH HOH . I 6 HOH B 28 47 47 HOH HOH . I 6 HOH B 29 48 48 HOH HOH . I 6 HOH B 30 50 50 HOH HOH . I 6 HOH B 31 51 51 HOH HOH . I 6 HOH B 32 54 54 HOH HOH . I 6 HOH B 33 56 56 HOH HOH . I 6 HOH B 34 57 57 HOH HOH . I 6 HOH B 35 59 59 HOH HOH . I 6 HOH B 36 60 60 HOH HOH . I 6 HOH B 37 63 63 HOH HOH . I 6 HOH B 38 64 64 HOH HOH . I 6 HOH B 39 65 65 HOH HOH . I 6 HOH B 40 66 66 HOH HOH . I 6 HOH B 41 67 67 HOH HOH . I 6 HOH B 42 68 68 HOH HOH . I 6 HOH B 43 69 69 HOH HOH . I 6 HOH B 44 71 71 HOH HOH . I 6 HOH B 45 75 75 HOH HOH . I 6 HOH B 46 76 76 HOH HOH . I 6 HOH B 47 77 77 HOH HOH . I 6 HOH B 48 79 79 HOH HOH . I 6 HOH B 49 81 81 HOH HOH . I 6 HOH B 50 83 83 HOH HOH . I 6 HOH B 51 84 84 HOH HOH . I 6 HOH B 52 87 87 HOH HOH . I 6 HOH B 53 88 88 HOH HOH . I 6 HOH B 54 89 89 HOH HOH . I 6 HOH B 55 90 90 HOH HOH . I 6 HOH B 56 92 92 HOH HOH . I 6 HOH B 57 93 93 HOH HOH . I 6 HOH B 58 94 94 HOH HOH . I 6 HOH B 59 95 95 HOH HOH . I 6 HOH B 60 97 97 HOH HOH . I 6 HOH B 61 98 98 HOH HOH . I 6 HOH B 62 99 99 HOH HOH . I 6 HOH B 63 102 102 HOH HOH . I 6 HOH B 64 103 103 HOH HOH . I 6 HOH B 65 108 108 HOH HOH . I 6 HOH B 66 110 110 HOH HOH . I 6 HOH B 67 112 112 HOH HOH . I 6 HOH B 68 113 113 HOH HOH . I 6 HOH B 69 114 114 HOH HOH . I 6 HOH B 70 115 115 HOH HOH . I 6 HOH B 71 119 119 HOH HOH . I 6 HOH B 72 120 120 HOH HOH . I 6 HOH B 73 121 121 HOH HOH . I 6 HOH B 74 123 123 HOH HOH . I 6 HOH B 75 125 125 HOH HOH . I 6 HOH B 76 126 126 HOH HOH . I 6 HOH B 77 128 128 HOH HOH . I 6 HOH B 78 514 514 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 17.411 _atom_site.Cartn_y -20.433 _atom_site.Cartn_z -33.811 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 100 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #