data_3NMV # _model_server_result.job_id 2wXFxKFwoPiJ8tNBe23Irw _model_server_result.datetime_utc '2024-11-15 09:15:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 3NMV # _exptl.entry_id 3NMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.256 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NMV _cell.length_a 62.129 _cell.length_b 97.587 _cell.length_c 134.505 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O HOH . B HOH 1 1_555 D MG MG . B MG 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc2 H O HOH . B HOH 11 1_555 F MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc3 H O HOH . B HOH 75 1_555 F MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc4 B OE1 GLU 27 B GLU 126 1_555 F MG MG . B MG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 B OD2 ASP 66 B ASP 165 1_555 D MG MG . B MG 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 B OD2 ASP 66 B ASP 165 1_555 E MG MG . B MG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc7 B OD1 ASP 152 B ASP 251 1_555 E MG MG . B MG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc8 B OG SER 153 B SER 252 1_555 E MG MG . B MG 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc9 B OD1 ASP 238 B ASP 337 1_555 D MG MG . B MG 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc10 B OD2 ASP 303 B ASP 402 1_555 D MG MG . B MG 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 F MG MG . B MG 426 1_555 H O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? # _chem_comp.formula 'C16 H13 Br N2 O2 S' _chem_comp.formula_weight 377.256 _chem_comp.id PYV _chem_comp.mon_nstd_flag . _chem_comp.name 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Pyrabactin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S N1 PYV sing 277 n n S O1 PYV doub 278 n n S O2 PYV doub 279 n n S C4 PYV sing 280 n n BR C1 PYV sing 281 n n C1 C2 PYV doub 282 n y C1 C6 PYV sing 283 n y N1 C11 PYV sing 284 n n C2 C3 PYV sing 285 n y C2 C10 PYV sing 286 n y N2 C12 PYV doub 287 n y N2 C13 PYV sing 288 n y C3 C4 PYV doub 289 n y C3 C7 PYV sing 290 n y C4 C5 PYV sing 291 n y C5 C6 PYV doub 292 n y C7 C8 PYV doub 293 n y C8 C9 PYV sing 294 n y C9 C10 PYV doub 295 n y C11 C12 PYV sing 296 n n C12 C16 PYV sing 297 n y C13 C14 PYV doub 298 n y C14 C15 PYV sing 299 n y C15 C16 PYV doub 300 n y N1 HN1 PYV sing 301 n n C5 H5 PYV sing 302 n n C6 H6 PYV sing 303 n n C7 H7 PYV sing 304 n n C8 H8 PYV sing 305 n n C9 H9 PYV sing 306 n n C10 H10 PYV sing 307 n n C11 H11 PYV sing 308 n n C11 H11A PYV sing 309 n n C13 H13 PYV sing 310 n n C14 H14 PYV sing 311 n n C15 H15 PYV sing 312 n n C16 H16 PYV sing 313 n n # _atom_sites.entry_id 3NMV _atom_sites.fract_transf_matrix[1][1] 0.016096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PYV A 1 900 900 PYV PYV . D 4 MG B 1 424 424 MG MG . E 4 MG B 1 425 425 MG MG . F 4 MG B 1 426 426 MG MG . G 5 HOH A 1 3 3 HOH HOH . G 5 HOH A 2 4 4 HOH HOH . G 5 HOH A 3 6 6 HOH HOH . G 5 HOH A 4 7 7 HOH HOH . G 5 HOH A 5 9 9 HOH HOH . G 5 HOH A 6 10 10 HOH HOH . G 5 HOH A 7 190 190 HOH HOH . G 5 HOH A 8 191 191 HOH HOH . G 5 HOH A 9 192 192 HOH HOH . G 5 HOH A 10 193 193 HOH HOH . G 5 HOH A 11 194 194 HOH HOH . G 5 HOH A 12 195 195 HOH HOH . G 5 HOH A 13 196 196 HOH HOH . G 5 HOH A 14 197 197 HOH HOH . G 5 HOH A 15 198 198 HOH HOH . G 5 HOH A 16 199 199 HOH HOH . G 5 HOH A 17 200 200 HOH HOH . G 5 HOH A 18 201 201 HOH HOH . G 5 HOH A 19 202 202 HOH HOH . G 5 HOH A 20 203 203 HOH HOH . G 5 HOH A 21 204 204 HOH HOH . G 5 HOH A 22 205 205 HOH HOH . G 5 HOH A 23 206 206 HOH HOH . G 5 HOH A 24 207 207 HOH HOH . G 5 HOH A 25 208 208 HOH HOH . G 5 HOH A 26 209 209 HOH HOH . G 5 HOH A 27 210 210 HOH HOH . G 5 HOH A 28 211 211 HOH HOH . G 5 HOH A 29 212 212 HOH HOH . G 5 HOH A 30 213 213 HOH HOH . G 5 HOH A 31 214 214 HOH HOH . G 5 HOH A 32 215 215 HOH HOH . G 5 HOH A 33 216 216 HOH HOH . G 5 HOH A 34 217 217 HOH HOH . G 5 HOH A 35 218 218 HOH HOH . G 5 HOH A 36 219 219 HOH HOH . G 5 HOH A 37 220 220 HOH HOH . G 5 HOH A 38 221 221 HOH HOH . G 5 HOH A 39 222 222 HOH HOH . G 5 HOH A 40 223 223 HOH HOH . G 5 HOH A 41 224 224 HOH HOH . G 5 HOH A 42 225 225 HOH HOH . G 5 HOH A 43 226 226 HOH HOH . G 5 HOH A 44 227 227 HOH HOH . G 5 HOH A 45 228 228 HOH HOH . G 5 HOH A 46 229 229 HOH HOH . G 5 HOH A 47 230 230 HOH HOH . G 5 HOH A 48 231 231 HOH HOH . G 5 HOH A 49 232 232 HOH HOH . G 5 HOH A 50 233 233 HOH HOH . G 5 HOH A 51 234 234 HOH HOH . G 5 HOH A 52 235 235 HOH HOH . G 5 HOH A 53 236 236 HOH HOH . G 5 HOH A 54 237 237 HOH HOH . G 5 HOH A 55 238 238 HOH HOH . G 5 HOH A 56 239 239 HOH HOH . G 5 HOH A 57 240 240 HOH HOH . G 5 HOH A 58 241 241 HOH HOH . G 5 HOH A 59 242 242 HOH HOH . G 5 HOH A 60 243 243 HOH HOH . G 5 HOH A 61 244 244 HOH HOH . G 5 HOH A 62 245 245 HOH HOH . G 5 HOH A 63 246 246 HOH HOH . G 5 HOH A 64 247 247 HOH HOH . G 5 HOH A 65 248 248 HOH HOH . G 5 HOH A 66 249 249 HOH HOH . G 5 HOH A 67 250 250 HOH HOH . G 5 HOH A 68 251 251 HOH HOH . G 5 HOH A 69 252 252 HOH HOH . G 5 HOH A 70 253 253 HOH HOH . G 5 HOH A 71 254 254 HOH HOH . G 5 HOH A 72 255 255 HOH HOH . G 5 HOH A 73 256 256 HOH HOH . G 5 HOH A 74 257 257 HOH HOH . G 5 HOH A 75 258 258 HOH HOH . G 5 HOH A 76 259 259 HOH HOH . G 5 HOH A 77 260 260 HOH HOH . G 5 HOH A 78 261 261 HOH HOH . G 5 HOH A 79 262 262 HOH HOH . G 5 HOH A 80 263 263 HOH HOH . G 5 HOH A 81 264 264 HOH HOH . G 5 HOH A 82 265 265 HOH HOH . G 5 HOH A 83 266 266 HOH HOH . G 5 HOH A 84 267 267 HOH HOH . G 5 HOH A 85 268 268 HOH HOH . G 5 HOH A 86 269 269 HOH HOH . G 5 HOH A 87 270 270 HOH HOH . G 5 HOH A 88 271 271 HOH HOH . G 5 HOH A 89 272 272 HOH HOH . G 5 HOH A 90 273 273 HOH HOH . G 5 HOH A 91 274 274 HOH HOH . G 5 HOH A 92 275 275 HOH HOH . G 5 HOH A 93 276 276 HOH HOH . G 5 HOH A 94 277 277 HOH HOH . G 5 HOH A 95 278 278 HOH HOH . G 5 HOH A 96 279 279 HOH HOH . G 5 HOH A 97 280 280 HOH HOH . G 5 HOH A 98 281 281 HOH HOH . H 5 HOH B 1 1 1 HOH HOH . H 5 HOH B 2 2 2 HOH HOH . H 5 HOH B 3 5 5 HOH HOH . H 5 HOH B 4 8 8 HOH HOH . H 5 HOH B 5 11 11 HOH HOH . H 5 HOH B 6 14 14 HOH HOH . H 5 HOH B 7 17 17 HOH HOH . H 5 HOH B 8 21 21 HOH HOH . H 5 HOH B 9 25 25 HOH HOH . H 5 HOH B 10 27 27 HOH HOH . H 5 HOH B 11 29 29 HOH HOH . H 5 HOH B 12 33 33 HOH HOH . H 5 HOH B 13 34 34 HOH HOH . H 5 HOH B 14 39 39 HOH HOH . H 5 HOH B 15 40 40 HOH HOH . H 5 HOH B 16 41 41 HOH HOH . H 5 HOH B 17 42 42 HOH HOH . H 5 HOH B 18 45 45 HOH HOH . H 5 HOH B 19 49 49 HOH HOH . H 5 HOH B 20 52 52 HOH HOH . H 5 HOH B 21 54 54 HOH HOH . H 5 HOH B 22 55 55 HOH HOH . H 5 HOH B 23 58 58 HOH HOH . H 5 HOH B 24 61 61 HOH HOH . H 5 HOH B 25 63 63 HOH HOH . H 5 HOH B 26 67 67 HOH HOH . H 5 HOH B 27 69 69 HOH HOH . H 5 HOH B 28 70 70 HOH HOH . H 5 HOH B 29 71 71 HOH HOH . H 5 HOH B 30 72 72 HOH HOH . H 5 HOH B 31 73 73 HOH HOH . H 5 HOH B 32 75 75 HOH HOH . H 5 HOH B 33 76 76 HOH HOH . H 5 HOH B 34 78 78 HOH HOH . H 5 HOH B 35 79 79 HOH HOH . H 5 HOH B 36 81 81 HOH HOH . H 5 HOH B 37 84 84 HOH HOH . H 5 HOH B 38 85 85 HOH HOH . H 5 HOH B 39 87 87 HOH HOH . H 5 HOH B 40 90 90 HOH HOH . H 5 HOH B 41 91 91 HOH HOH . H 5 HOH B 42 93 93 HOH HOH . H 5 HOH B 43 95 95 HOH HOH . H 5 HOH B 44 96 96 HOH HOH . H 5 HOH B 45 97 97 HOH HOH . H 5 HOH B 46 427 427 HOH HOH . H 5 HOH B 47 428 428 HOH HOH . H 5 HOH B 48 429 429 HOH HOH . H 5 HOH B 49 430 430 HOH HOH . H 5 HOH B 50 431 431 HOH HOH . H 5 HOH B 51 432 432 HOH HOH . H 5 HOH B 52 433 433 HOH HOH . H 5 HOH B 53 434 434 HOH HOH . H 5 HOH B 54 435 435 HOH HOH . H 5 HOH B 55 436 436 HOH HOH . H 5 HOH B 56 437 437 HOH HOH . H 5 HOH B 57 438 438 HOH HOH . H 5 HOH B 58 439 439 HOH HOH . H 5 HOH B 59 440 440 HOH HOH . H 5 HOH B 60 441 441 HOH HOH . H 5 HOH B 61 442 442 HOH HOH . H 5 HOH B 62 443 443 HOH HOH . H 5 HOH B 63 444 444 HOH HOH . H 5 HOH B 64 445 445 HOH HOH . H 5 HOH B 65 446 446 HOH HOH . H 5 HOH B 66 447 447 HOH HOH . H 5 HOH B 67 448 448 HOH HOH . H 5 HOH B 68 449 449 HOH HOH . H 5 HOH B 69 450 450 HOH HOH . H 5 HOH B 70 451 451 HOH HOH . H 5 HOH B 71 452 452 HOH HOH . H 5 HOH B 72 453 453 HOH HOH . H 5 HOH B 73 454 454 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S PYV . . . C 3 7.706 -13.958 -6.185 1 46.55 ? S PYV 900 A 1 HETATM 2 BR BR PYV . . . C 3 9.914 -9.152 -9.677 1 6.58 ? BR PYV 900 A 1 HETATM 3 C C1 PYV . . . C 3 9.411 -10.358 -8.915 1 32.81 ? C1 PYV 900 A 1 HETATM 4 N N1 PYV . . . C 3 8.861 -14.919 -5.731 1 48.51 ? N1 PYV 900 A 1 HETATM 5 O O1 PYV . . . C 3 7.364 -13.582 -4.852 1 53.49 ? O1 PYV 900 A 1 HETATM 6 C C2 PYV . . . C 3 8.675 -11.489 -9.432 1 37.05 ? C2 PYV 900 A 1 HETATM 7 N N2 PYV . . . C 3 10.771 -15.074 -8.66 1 39.08 ? N2 PYV 900 A 1 HETATM 8 O O2 PYV . . . C 3 6.639 -14.634 -6.835 1 51.6 ? O2 PYV 900 A 1 HETATM 9 C C3 PYV . . . C 3 8.148 -12.687 -8.649 1 40.19 ? C3 PYV 900 A 1 HETATM 10 C C4 PYV . . . C 3 8.264 -12.713 -7.151 1 43.52 ? C4 PYV 900 A 1 HETATM 11 C C5 PYV . . . C 3 8.966 -11.569 -6.67 1 39.06 ? C5 PYV 900 A 1 HETATM 12 C C6 PYV . . . C 3 9.449 -10.492 -7.486 1 38.21 ? C6 PYV 900 A 1 HETATM 13 C C7 PYV . . . C 3 7.464 -13.725 -9.302 1 39.71 ? C7 PYV 900 A 1 HETATM 14 C C8 PYV . . . C 3 7.368 -13.714 -10.666 1 39.46 ? C8 PYV 900 A 1 HETATM 15 C C9 PYV . . . C 3 7.836 -12.64 -11.388 1 40.94 ? C9 PYV 900 A 1 HETATM 16 C C10 PYV . . . C 3 8.497 -11.56 -10.793 1 40.91 ? C10 PYV 900 A 1 HETATM 17 C C11 PYV . . . C 3 9.669 -15.629 -6.618 1 44.6 ? C11 PYV 900 A 1 HETATM 18 C C12 PYV . . . C 3 10.688 -14.804 -7.344 1 40.24 ? C12 PYV 900 A 1 HETATM 19 C C13 PYV . . . C 3 11.671 -14.421 -9.421 1 40.81 ? C13 PYV 900 A 1 HETATM 20 C C14 PYV . . . C 3 12.563 -13.513 -8.875 1 36.93 ? C14 PYV 900 A 1 HETATM 21 C C15 PYV . . . C 3 12.487 -13.264 -7.52 1 35.17 ? C15 PYV 900 A 1 HETATM 22 C C16 PYV . . . C 3 11.526 -13.89 -6.746 1 36.94 ? C16 PYV 900 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #