data_3NNF
#
_model_server_result.job_id            ky3NWtWb4VN0BHSxyOhB8w 
_model_server_result.datetime_utc      '2025-03-06 06:16:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nnf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":500}' 
#
_entry.id    3NNF 
#
_exptl.entry_id    3NNF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NNF 
_cell.length_a            87.563 
_cell.length_b            87.563 
_cell.length_c            157.745 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NNF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -78.8725 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 139 A HIS 115 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc2 A NE2 HIS 252 A HIS 228 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc3 I O2 AKG . A AKG 500 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc4 I O5 AKG . A AKG 500 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc5 B FE FE . A FE 600 1_555 E O1 FMT . A FMT 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     3NNF 
_atom_sites.fract_transf_matrix[1][1]    0.01142 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01142 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006339 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 600 600 FE FE . 
C 3 FMT A 1 750 750 FMT FMT . 
D 3 FMT A 1 751 751 FMT FMT . 
E 3 FMT A 1 752 752 FMT FMT . 
F 3 FMT A 1 753 753 FMT FMT . 
G 3 FMT A 1 754 754 FMT FMT . 
H 3 FMT A 1 755 755 FMT FMT . 
I 4 AKG A 1 500 500 AKG AKG . 
J 5 CL A 1 321 1 CL CL . 
K 6 HOH A 1 322 1 HOH HOH . 
K 6 HOH A 2 323 2 HOH HOH . 
K 6 HOH A 3 324 3 HOH HOH . 
K 6 HOH A 4 325 4 HOH HOH . 
K 6 HOH A 5 326 5 HOH HOH . 
K 6 HOH A 6 327 6 HOH HOH . 
K 6 HOH A 7 328 7 HOH HOH . 
K 6 HOH A 8 329 8 HOH HOH . 
K 6 HOH A 9 330 9 HOH HOH . 
K 6 HOH A 10 331 10 HOH HOH . 
K 6 HOH A 11 332 11 HOH HOH . 
K 6 HOH A 12 333 12 HOH HOH . 
K 6 HOH A 13 334 13 HOH HOH . 
K 6 HOH A 14 335 14 HOH HOH . 
K 6 HOH A 15 336 15 HOH HOH . 
K 6 HOH A 16 337 16 HOH HOH . 
K 6 HOH A 17 338 17 HOH HOH . 
K 6 HOH A 18 339 18 HOH HOH . 
K 6 HOH A 19 340 19 HOH HOH . 
K 6 HOH A 20 341 20 HOH HOH . 
K 6 HOH A 21 342 21 HOH HOH . 
K 6 HOH A 22 343 22 HOH HOH . 
K 6 HOH A 23 344 23 HOH HOH . 
K 6 HOH A 24 345 24 HOH HOH . 
K 6 HOH A 25 346 25 HOH HOH . 
K 6 HOH A 26 347 26 HOH HOH . 
K 6 HOH A 27 348 27 HOH HOH . 
K 6 HOH A 28 349 28 HOH HOH . 
K 6 HOH A 29 350 29 HOH HOH . 
K 6 HOH A 30 351 30 HOH HOH . 
K 6 HOH A 31 352 31 HOH HOH . 
K 6 HOH A 32 353 32 HOH HOH . 
K 6 HOH A 33 354 33 HOH HOH . 
K 6 HOH A 34 355 34 HOH HOH . 
K 6 HOH A 35 356 35 HOH HOH . 
K 6 HOH A 36 357 36 HOH HOH . 
K 6 HOH A 37 358 37 HOH HOH . 
K 6 HOH A 38 359 38 HOH HOH . 
K 6 HOH A 39 360 39 HOH HOH . 
K 6 HOH A 40 361 40 HOH HOH . 
K 6 HOH A 41 362 41 HOH HOH . 
K 6 HOH A 42 363 42 HOH HOH . 
K 6 HOH A 43 364 43 HOH HOH . 
K 6 HOH A 44 365 44 HOH HOH . 
K 6 HOH A 45 366 45 HOH HOH . 
K 6 HOH A 46 367 46 HOH HOH . 
K 6 HOH A 47 368 47 HOH HOH . 
K 6 HOH A 48 369 48 HOH HOH . 
K 6 HOH A 49 370 49 HOH HOH . 
K 6 HOH A 50 371 50 HOH HOH . 
K 6 HOH A 51 372 51 HOH HOH . 
K 6 HOH A 52 373 52 HOH HOH . 
K 6 HOH A 53 374 53 HOH HOH . 
K 6 HOH A 54 375 54 HOH HOH . 
K 6 HOH A 55 376 55 HOH HOH . 
K 6 HOH A 56 377 56 HOH HOH . 
K 6 HOH A 57 378 57 HOH HOH . 
K 6 HOH A 58 379 58 HOH HOH . 
K 6 HOH A 59 380 59 HOH HOH . 
K 6 HOH A 60 381 60 HOH HOH . 
K 6 HOH A 61 382 61 HOH HOH . 
K 6 HOH A 62 383 62 HOH HOH . 
K 6 HOH A 63 384 63 HOH HOH . 
K 6 HOH A 64 385 64 HOH HOH . 
K 6 HOH A 65 386 65 HOH HOH . 
K 6 HOH A 66 387 66 HOH HOH . 
K 6 HOH A 67 388 67 HOH HOH . 
K 6 HOH A 68 389 68 HOH HOH . 
K 6 HOH A 69 390 69 HOH HOH . 
K 6 HOH A 70 391 70 HOH HOH . 
K 6 HOH A 71 392 71 HOH HOH . 
K 6 HOH A 72 393 72 HOH HOH . 
K 6 HOH A 73 394 73 HOH HOH . 
K 6 HOH A 74 395 74 HOH HOH . 
K 6 HOH A 75 396 75 HOH HOH . 
K 6 HOH A 76 397 76 HOH HOH . 
K 6 HOH A 77 398 77 HOH HOH . 
K 6 HOH A 78 399 78 HOH HOH . 
K 6 HOH A 79 400 79 HOH HOH . 
K 6 HOH A 80 401 80 HOH HOH . 
K 6 HOH A 81 402 81 HOH HOH . 
K 6 HOH A 82 403 82 HOH HOH . 
K 6 HOH A 83 404 83 HOH HOH . 
K 6 HOH A 84 405 84 HOH HOH . 
K 6 HOH A 85 406 85 HOH HOH . 
K 6 HOH A 86 407 86 HOH HOH . 
K 6 HOH A 87 408 87 HOH HOH . 
K 6 HOH A 88 409 88 HOH HOH . 
K 6 HOH A 89 410 89 HOH HOH . 
K 6 HOH A 90 411 90 HOH HOH . 
K 6 HOH A 91 412 91 HOH HOH . 
K 6 HOH A 92 413 92 HOH HOH . 
K 6 HOH A 93 414 93 HOH HOH . 
K 6 HOH A 94 415 94 HOH HOH . 
K 6 HOH A 95 416 95 HOH HOH . 
K 6 HOH A 96 417 96 HOH HOH . 
K 6 HOH A 97 418 97 HOH HOH . 
K 6 HOH A 98 419 98 HOH HOH . 
K 6 HOH A 99 420 99 HOH HOH . 
K 6 HOH A 100 421 100 HOH HOH . 
K 6 HOH A 101 422 101 HOH HOH . 
K 6 HOH A 102 423 102 HOH HOH . 
K 6 HOH A 103 424 103 HOH HOH . 
K 6 HOH A 104 425 104 HOH HOH . 
K 6 HOH A 105 426 105 HOH HOH . 
K 6 HOH A 106 427 106 HOH HOH . 
K 6 HOH A 107 428 107 HOH HOH . 
K 6 HOH A 108 429 108 HOH HOH . 
K 6 HOH A 109 430 109 HOH HOH . 
K 6 HOH A 110 431 110 HOH HOH . 
K 6 HOH A 111 432 111 HOH HOH . 
K 6 HOH A 112 433 112 HOH HOH . 
K 6 HOH A 113 434 113 HOH HOH . 
K 6 HOH A 114 435 114 HOH HOH . 
K 6 HOH A 115 436 115 HOH HOH . 
K 6 HOH A 116 437 116 HOH HOH . 
K 6 HOH A 117 438 117 HOH HOH . 
K 6 HOH A 118 439 118 HOH HOH . 
K 6 HOH A 119 440 119 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . I 4 -10.811 -0.137 -20.06 1 55.25 ? C1 AKG 500 A 1 
HETATM 2 O O1 AKG . . . I 4 -11.463 0.175 -19.04 1 63.59 ? O1 AKG 500 A 1 
HETATM 3 O O2 AKG . . . I 4 -11.031 0.299 -21.203 1 56.38 ? O2 AKG 500 A 1 
HETATM 4 C C2 AKG . . . I 4 -9.683 -1.133 -19.881 1 54.68 ? C2 AKG 500 A 1 
HETATM 5 O O5 AKG . . . I 4 -8.984 -1.407 -20.859 1 54.28 ? O5 AKG 500 A 1 
HETATM 6 C C3 AKG . . . I 4 -9.442 -1.67 -18.445 1 51.42 ? C3 AKG 500 A 1 
HETATM 7 C C4 AKG . . . I 4 -8.161 -2.504 -18.274 1 56.45 ? C4 AKG 500 A 1 
HETATM 8 C C5 AKG . . . I 4 -7.93 -2.917 -16.807 1 53.53 ? C5 AKG 500 A 1 
HETATM 9 O O3 AKG . . . I 4 -8.815 -2.632 -15.964 1 50.6 ? O3 AKG 500 A 1 
HETATM 10 O O4 AKG . . . I 4 -6.83 -3.455 -16.56 1 54.17 ? O4 AKG 500 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#