data_3NNF # _model_server_result.job_id Ayq8L1bk_fcHA1aBdTPHWQ _model_server_result.datetime_utc '2025-03-06 06:30:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":753}' # _entry.id 3NNF # _exptl.entry_id 3NNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NNF _cell.length_a 87.563 _cell.length_b 87.563 _cell.length_c 157.745 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -78.8725 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 139 A HIS 115 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc2 A NE2 HIS 252 A HIS 228 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 I O2 AKG . A AKG 500 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 I O5 AKG . A AKG 500 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc5 B FE FE . A FE 600 1_555 E O1 FMT . A FMT 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 98 n n C O2 FMT sing 99 n n C H FMT sing 100 n n O2 HO2 FMT sing 101 n n # _atom_sites.entry_id 3NNF _atom_sites.fract_transf_matrix[1][1] 0.01142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 600 600 FE FE . C 3 FMT A 1 750 750 FMT FMT . D 3 FMT A 1 751 751 FMT FMT . E 3 FMT A 1 752 752 FMT FMT . F 3 FMT A 1 753 753 FMT FMT . G 3 FMT A 1 754 754 FMT FMT . H 3 FMT A 1 755 755 FMT FMT . I 4 AKG A 1 500 500 AKG AKG . J 5 CL A 1 321 1 CL CL . K 6 HOH A 1 322 1 HOH HOH . K 6 HOH A 2 323 2 HOH HOH . K 6 HOH A 3 324 3 HOH HOH . K 6 HOH A 4 325 4 HOH HOH . K 6 HOH A 5 326 5 HOH HOH . K 6 HOH A 6 327 6 HOH HOH . K 6 HOH A 7 328 7 HOH HOH . K 6 HOH A 8 329 8 HOH HOH . K 6 HOH A 9 330 9 HOH HOH . K 6 HOH A 10 331 10 HOH HOH . K 6 HOH A 11 332 11 HOH HOH . K 6 HOH A 12 333 12 HOH HOH . K 6 HOH A 13 334 13 HOH HOH . K 6 HOH A 14 335 14 HOH HOH . K 6 HOH A 15 336 15 HOH HOH . K 6 HOH A 16 337 16 HOH HOH . K 6 HOH A 17 338 17 HOH HOH . K 6 HOH A 18 339 18 HOH HOH . K 6 HOH A 19 340 19 HOH HOH . K 6 HOH A 20 341 20 HOH HOH . K 6 HOH A 21 342 21 HOH HOH . K 6 HOH A 22 343 22 HOH HOH . K 6 HOH A 23 344 23 HOH HOH . K 6 HOH A 24 345 24 HOH HOH . K 6 HOH A 25 346 25 HOH HOH . K 6 HOH A 26 347 26 HOH HOH . K 6 HOH A 27 348 27 HOH HOH . K 6 HOH A 28 349 28 HOH HOH . K 6 HOH A 29 350 29 HOH HOH . K 6 HOH A 30 351 30 HOH HOH . K 6 HOH A 31 352 31 HOH HOH . K 6 HOH A 32 353 32 HOH HOH . K 6 HOH A 33 354 33 HOH HOH . K 6 HOH A 34 355 34 HOH HOH . K 6 HOH A 35 356 35 HOH HOH . K 6 HOH A 36 357 36 HOH HOH . K 6 HOH A 37 358 37 HOH HOH . K 6 HOH A 38 359 38 HOH HOH . K 6 HOH A 39 360 39 HOH HOH . K 6 HOH A 40 361 40 HOH HOH . K 6 HOH A 41 362 41 HOH HOH . K 6 HOH A 42 363 42 HOH HOH . K 6 HOH A 43 364 43 HOH HOH . K 6 HOH A 44 365 44 HOH HOH . K 6 HOH A 45 366 45 HOH HOH . K 6 HOH A 46 367 46 HOH HOH . K 6 HOH A 47 368 47 HOH HOH . K 6 HOH A 48 369 48 HOH HOH . K 6 HOH A 49 370 49 HOH HOH . K 6 HOH A 50 371 50 HOH HOH . K 6 HOH A 51 372 51 HOH HOH . K 6 HOH A 52 373 52 HOH HOH . K 6 HOH A 53 374 53 HOH HOH . K 6 HOH A 54 375 54 HOH HOH . K 6 HOH A 55 376 55 HOH HOH . K 6 HOH A 56 377 56 HOH HOH . K 6 HOH A 57 378 57 HOH HOH . K 6 HOH A 58 379 58 HOH HOH . K 6 HOH A 59 380 59 HOH HOH . K 6 HOH A 60 381 60 HOH HOH . K 6 HOH A 61 382 61 HOH HOH . K 6 HOH A 62 383 62 HOH HOH . K 6 HOH A 63 384 63 HOH HOH . K 6 HOH A 64 385 64 HOH HOH . K 6 HOH A 65 386 65 HOH HOH . K 6 HOH A 66 387 66 HOH HOH . K 6 HOH A 67 388 67 HOH HOH . K 6 HOH A 68 389 68 HOH HOH . K 6 HOH A 69 390 69 HOH HOH . K 6 HOH A 70 391 70 HOH HOH . K 6 HOH A 71 392 71 HOH HOH . K 6 HOH A 72 393 72 HOH HOH . K 6 HOH A 73 394 73 HOH HOH . K 6 HOH A 74 395 74 HOH HOH . K 6 HOH A 75 396 75 HOH HOH . K 6 HOH A 76 397 76 HOH HOH . K 6 HOH A 77 398 77 HOH HOH . K 6 HOH A 78 399 78 HOH HOH . K 6 HOH A 79 400 79 HOH HOH . K 6 HOH A 80 401 80 HOH HOH . K 6 HOH A 81 402 81 HOH HOH . K 6 HOH A 82 403 82 HOH HOH . K 6 HOH A 83 404 83 HOH HOH . K 6 HOH A 84 405 84 HOH HOH . K 6 HOH A 85 406 85 HOH HOH . K 6 HOH A 86 407 86 HOH HOH . K 6 HOH A 87 408 87 HOH HOH . K 6 HOH A 88 409 88 HOH HOH . K 6 HOH A 89 410 89 HOH HOH . K 6 HOH A 90 411 90 HOH HOH . K 6 HOH A 91 412 91 HOH HOH . K 6 HOH A 92 413 92 HOH HOH . K 6 HOH A 93 414 93 HOH HOH . K 6 HOH A 94 415 94 HOH HOH . K 6 HOH A 95 416 95 HOH HOH . K 6 HOH A 96 417 96 HOH HOH . K 6 HOH A 97 418 97 HOH HOH . K 6 HOH A 98 419 98 HOH HOH . K 6 HOH A 99 420 99 HOH HOH . K 6 HOH A 100 421 100 HOH HOH . K 6 HOH A 101 422 101 HOH HOH . K 6 HOH A 102 423 102 HOH HOH . K 6 HOH A 103 424 103 HOH HOH . K 6 HOH A 104 425 104 HOH HOH . K 6 HOH A 105 426 105 HOH HOH . K 6 HOH A 106 427 106 HOH HOH . K 6 HOH A 107 428 107 HOH HOH . K 6 HOH A 108 429 108 HOH HOH . K 6 HOH A 109 430 109 HOH HOH . K 6 HOH A 110 431 110 HOH HOH . K 6 HOH A 111 432 111 HOH HOH . K 6 HOH A 112 433 112 HOH HOH . K 6 HOH A 113 434 113 HOH HOH . K 6 HOH A 114 435 114 HOH HOH . K 6 HOH A 115 436 115 HOH HOH . K 6 HOH A 116 437 116 HOH HOH . K 6 HOH A 117 438 117 HOH HOH . K 6 HOH A 118 439 118 HOH HOH . K 6 HOH A 119 440 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . F 3 -20.535 9.178 -5.131 1 71.8 ? C FMT 753 A 1 HETATM 2 O O1 FMT . . . F 3 -20.99 9.387 -6.267 1 68.67 ? O1 FMT 753 A 1 HETATM 3 O O2 FMT . . . F 3 -19.57 9.758 -4.606 1 63.98 ? O2 FMT 753 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 3 #