data_3NNO # _model_server_result.job_id rbZxhWBoaAOmLy-Ee_FXNA _model_server_result.datetime_utc '2024-10-18 19:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nno # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":172}' # _entry.id 3NNO # _exptl.entry_id 3NNO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-L-rhamnopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NNO _cell.length_a 90.25 _cell.length_b 101.9 _cell.length_c 164.08 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 22 A CYS 22 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 43 A CYS 43 1_555 A SG CYS 49 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 6 B CYS 6 1_555 B SG CYS 130 B CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 67 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 43 B CYS 43 1_555 B SG CYS 49 B CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 C SG CYS 6 C CYS 6 1_555 C SG CYS 130 C CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf8 C SG CYS 22 C CYS 22 1_555 C SG CYS 67 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf9 C SG CYS 43 C CYS 43 1_555 C SG CYS 49 C CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf10 D SG CYS 6 D CYS 6 1_555 D SG CYS 130 D CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 D SG CYS 22 D CYS 22 1_555 D SG CYS 67 D CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 D SG CYS 43 D CYS 43 1_555 D SG CYS 49 D CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id RAM _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-rhamnopyranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-L-rhamnose;6-deoxy-alpha-L-mannopyranose;L-rhamnose;rhamnose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RAM sing 277 n n C1 O1 RAM sing 278 n n C1 O5 RAM sing 279 n n C1 H1 RAM sing 280 n n C2 C3 RAM sing 281 n n C2 O2 RAM sing 282 n n C2 H2 RAM sing 283 n n C3 C4 RAM sing 284 n n C3 O3 RAM sing 285 n n C3 H3 RAM sing 286 n n C4 C5 RAM sing 287 n n C4 O4 RAM sing 288 n n C4 H4 RAM sing 289 n n C5 C6 RAM sing 290 n n C5 O5 RAM sing 291 n n C5 H5 RAM sing 292 n n C6 H61 RAM sing 293 n n C6 H62 RAM sing 294 n n C6 H63 RAM sing 295 n n O1 HO1 RAM sing 296 n n O2 HO2 RAM sing 297 n n O3 HO3 RAM sing 298 n n O4 HO4 RAM sing 299 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version RAM LRhapa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 RAM a-L-rhamnopyranose 'COMMON NAME' GMML 1 RAM a-L-Rhap 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 RAM Rha 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3NNO _atom_sites.fract_transf_matrix[1][1] 0.01108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TLA C 1 172 1 TLA TLA . F 3 RAM D 1 172 2 RAM RAM . G 4 HOH A 1 173 173 HOH HOH . G 4 HOH A 2 174 174 HOH HOH . G 4 HOH A 3 175 3 HOH HOH . G 4 HOH A 4 176 18 HOH HOH . G 4 HOH A 5 177 177 HOH HOH . G 4 HOH A 6 178 19 HOH HOH . G 4 HOH A 7 179 179 HOH HOH . G 4 HOH A 8 180 180 HOH HOH . G 4 HOH A 9 181 28 HOH HOH . G 4 HOH A 10 182 182 HOH HOH . G 4 HOH A 11 183 43 HOH HOH . G 4 HOH A 12 184 184 HOH HOH . G 4 HOH A 13 185 185 HOH HOH . G 4 HOH A 14 186 186 HOH HOH . G 4 HOH A 15 187 187 HOH HOH . G 4 HOH A 16 188 188 HOH HOH . G 4 HOH A 17 189 45 HOH HOH . G 4 HOH A 18 190 190 HOH HOH . G 4 HOH A 19 191 191 HOH HOH . G 4 HOH A 20 192 49 HOH HOH . G 4 HOH A 21 193 77 HOH HOH . G 4 HOH A 22 194 85 HOH HOH . G 4 HOH A 23 195 95 HOH HOH . G 4 HOH A 24 196 98 HOH HOH . G 4 HOH A 25 197 99 HOH HOH . G 4 HOH A 26 198 100 HOH HOH . G 4 HOH A 27 199 101 HOH HOH . G 4 HOH A 28 200 118 HOH HOH . G 4 HOH A 29 201 119 HOH HOH . G 4 HOH A 30 202 125 HOH HOH . G 4 HOH A 31 203 130 HOH HOH . G 4 HOH A 32 204 134 HOH HOH . G 4 HOH A 33 205 136 HOH HOH . G 4 HOH A 34 206 144 HOH HOH . G 4 HOH A 35 207 148 HOH HOH . G 4 HOH A 36 208 154 HOH HOH . G 4 HOH A 37 209 158 HOH HOH . H 4 HOH B 1 172 5 HOH HOH . H 4 HOH B 2 173 6 HOH HOH . H 4 HOH B 3 174 7 HOH HOH . H 4 HOH B 4 175 8 HOH HOH . H 4 HOH B 5 176 9 HOH HOH . H 4 HOH B 6 177 11 HOH HOH . H 4 HOH B 7 178 12 HOH HOH . H 4 HOH B 8 179 13 HOH HOH . H 4 HOH B 9 180 14 HOH HOH . H 4 HOH B 10 181 16 HOH HOH . H 4 HOH B 11 182 17 HOH HOH . H 4 HOH B 12 183 20 HOH HOH . H 4 HOH B 13 184 21 HOH HOH . H 4 HOH B 14 185 23 HOH HOH . H 4 HOH B 15 186 25 HOH HOH . H 4 HOH B 16 187 26 HOH HOH . H 4 HOH B 17 188 71 HOH HOH . H 4 HOH B 18 189 80 HOH HOH . H 4 HOH B 19 190 82 HOH HOH . H 4 HOH B 20 191 104 HOH HOH . H 4 HOH B 21 192 106 HOH HOH . H 4 HOH B 22 193 110 HOH HOH . H 4 HOH B 23 194 114 HOH HOH . H 4 HOH B 24 195 122 HOH HOH . H 4 HOH B 25 196 126 HOH HOH . H 4 HOH B 26 197 131 HOH HOH . H 4 HOH B 27 198 138 HOH HOH . H 4 HOH B 28 199 143 HOH HOH . H 4 HOH B 29 200 145 HOH HOH . H 4 HOH B 30 201 149 HOH HOH . H 4 HOH B 31 202 153 HOH HOH . H 4 HOH B 32 203 156 HOH HOH . H 4 HOH B 33 204 157 HOH HOH . I 4 HOH C 1 178 178 HOH HOH . I 4 HOH C 2 179 29 HOH HOH . I 4 HOH C 3 180 30 HOH HOH . I 4 HOH C 4 181 31 HOH HOH . I 4 HOH C 5 182 32 HOH HOH . I 4 HOH C 6 183 33 HOH HOH . I 4 HOH C 7 184 34 HOH HOH . I 4 HOH C 8 185 35 HOH HOH . I 4 HOH C 9 186 36 HOH HOH . I 4 HOH C 10 187 37 HOH HOH . I 4 HOH C 11 188 38 HOH HOH . I 4 HOH C 12 189 39 HOH HOH . I 4 HOH C 13 190 41 HOH HOH . I 4 HOH C 14 191 44 HOH HOH . I 4 HOH C 15 192 46 HOH HOH . I 4 HOH C 16 193 67 HOH HOH . I 4 HOH C 17 194 68 HOH HOH . I 4 HOH C 18 195 69 HOH HOH . I 4 HOH C 19 196 70 HOH HOH . I 4 HOH C 20 197 72 HOH HOH . I 4 HOH C 21 198 73 HOH HOH . I 4 HOH C 22 199 74 HOH HOH . I 4 HOH C 23 200 81 HOH HOH . I 4 HOH C 24 201 83 HOH HOH . I 4 HOH C 25 202 90 HOH HOH . I 4 HOH C 26 203 91 HOH HOH . I 4 HOH C 27 204 92 HOH HOH . I 4 HOH C 28 205 102 HOH HOH . I 4 HOH C 29 206 103 HOH HOH . I 4 HOH C 30 207 107 HOH HOH . I 4 HOH C 31 208 112 HOH HOH . I 4 HOH C 32 209 113 HOH HOH . I 4 HOH C 33 210 115 HOH HOH . I 4 HOH C 34 211 117 HOH HOH . I 4 HOH C 35 212 120 HOH HOH . I 4 HOH C 36 213 128 HOH HOH . I 4 HOH C 37 214 129 HOH HOH . I 4 HOH C 38 215 135 HOH HOH . I 4 HOH C 39 216 139 HOH HOH . I 4 HOH C 40 217 141 HOH HOH . I 4 HOH C 41 218 142 HOH HOH . I 4 HOH C 42 219 147 HOH HOH . I 4 HOH C 43 220 150 HOH HOH . I 4 HOH C 44 221 152 HOH HOH . I 4 HOH C 45 222 159 HOH HOH . J 4 HOH D 1 175 175 HOH HOH . J 4 HOH D 2 176 48 HOH HOH . J 4 HOH D 3 177 50 HOH HOH . J 4 HOH D 4 178 51 HOH HOH . J 4 HOH D 5 179 53 HOH HOH . J 4 HOH D 6 180 54 HOH HOH . J 4 HOH D 7 181 55 HOH HOH . J 4 HOH D 8 182 57 HOH HOH . J 4 HOH D 9 183 59 HOH HOH . J 4 HOH D 10 184 60 HOH HOH . J 4 HOH D 11 185 62 HOH HOH . J 4 HOH D 12 186 63 HOH HOH . J 4 HOH D 13 187 65 HOH HOH . J 4 HOH D 14 188 66 HOH HOH . J 4 HOH D 15 189 75 HOH HOH . J 4 HOH D 16 190 79 HOH HOH . J 4 HOH D 17 191 84 HOH HOH . J 4 HOH D 18 192 87 HOH HOH . J 4 HOH D 19 193 105 HOH HOH . J 4 HOH D 20 194 108 HOH HOH . J 4 HOH D 21 195 109 HOH HOH . J 4 HOH D 22 196 111 HOH HOH . J 4 HOH D 23 197 116 HOH HOH . J 4 HOH D 24 198 121 HOH HOH . J 4 HOH D 25 199 124 HOH HOH . J 4 HOH D 26 200 132 HOH HOH . J 4 HOH D 27 201 137 HOH HOH . J 4 HOH D 28 202 140 HOH HOH . J 4 HOH D 29 203 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RAM . . . F 3 29.193 28.731 -22.047 0.5 47.3 ? C1 RAM 172 D 1 HETATM 2 C C2 RAM . . . F 3 27.908 29.274 -22.7 0.5 46.86 ? C2 RAM 172 D 1 HETATM 3 C C3 RAM . . . F 3 26.665 29.367 -21.797 0.5 47 ? C3 RAM 172 D 1 HETATM 4 C C4 RAM . . . F 3 26.988 29.484 -20.309 0.5 46.95 ? C4 RAM 172 D 1 HETATM 5 C C5 RAM . . . F 3 28.089 28.525 -19.899 0.5 46.55 ? C5 RAM 172 D 1 HETATM 6 C C6 RAM . . . F 3 28.31 28.655 -18.391 0.5 45.43 ? C6 RAM 172 D 1 HETATM 7 O O1 RAM . . . F 3 29.418 27.386 -22.449 0.5 48.55 ? O1 RAM 172 D 1 HETATM 8 O O2 RAM . . . F 3 28.169 30.569 -23.246 0.5 47.47 ? O2 RAM 172 D 1 HETATM 9 O O3 RAM . . . F 3 25.862 30.477 -22.191 0.5 47.19 ? O3 RAM 172 D 1 HETATM 10 O O4 RAM . . . F 3 25.855 29.174 -19.532 0.5 47.26 ? O4 RAM 172 D 1 HETATM 11 O O5 RAM . . . F 3 29.256 28.852 -20.625 0.5 46.74 ? O5 RAM 172 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #