data_3NNS
#
_model_server_result.job_id            Id21LP46euLxZGokQURTDg 
_model_server_result.datetime_utc      '2024-11-28 23:45:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nns 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    3NNS 
#
_exptl.entry_id    3NNS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              66.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BERYLLIUM TRIFLUORIDE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.15 
_cell.angle_gamma         90 
_cell.entry_id            3NNS 
_cell.length_a            64.32 
_cell.length_b            37.492 
_cell.length_c            91.478 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NNS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,C,D,G 2 1 
B,E,F,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 1 A MSE 1 1_555 A N MSE 2 A MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 2 A MSE 2 1_555 A N TRP 3 A TRP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C VAL 51 A VAL 51 1_555 A N MSE 52 A MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MSE 52 A MSE 52 1_555 A N LEU 53 A LEU 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 A C ARG 63 A ARG 63 1_555 A N MSE 64 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 A C MSE 64 A MSE 64 1_555 A N ILE 65 A ILE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 B C MSE 1 B MSE 1 1_555 B N MSE 2 B MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 B C MSE 2 B MSE 2 1_555 B N TRP 3 B TRP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 B C VAL 51 B VAL 51 1_555 B N MSE 52 B MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 B C MSE 52 B MSE 52 1_555 B N LEU 53 B LEU 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale11 B C ARG 63 B ARG 63 1_555 B N MSE 64 B MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 B C MSE 64 B MSE 64 1_555 B N ILE 65 B ILE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A OD2 ASP 10 A ASP 10 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc2 A OD1 ASP 50 A ASP 50 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc3 A OD2 ASP 50 A ASP 50 1_555 D BE BEF . A BEF 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? 
metalc ? metalc4 A O MSE 52 A MSE 52 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc5 G O HOH . A HOH 283 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? 
metalc ? metalc6 G O HOH . A HOH 317 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc7 B OD2 ASP 10 B ASP 10 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc8 B OD1 ASP 50 B ASP 50 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc9 B OD2 ASP 50 B ASP 50 1_555 F BE BEF . B BEF 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? 
metalc ? metalc10 B O MSE 52 B MSE 52 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc11 H O HOH . B HOH 284 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc12 H O HOH . B HOH 285 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
#
_chem_comp.formula           'Be F3 -1' 
_chem_comp.formula_weight    66.007 
_chem_comp.id                BEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BERYLLIUM TRIFLUORIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BE F1 BEF sing 70 n n 
BE F2 BEF sing 71 n n 
BE F3 BEF sing 72 n n 
#
_atom_sites.entry_id                     3NNS 
_atom_sites.fract_transf_matrix[1][1]    0.015547 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005097 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026672 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 401 401 MG MG . 
D 3 BEF A 1 402 402 BEF BEF . 
E 2 MG B 1 501 501 MG MG . 
F 3 BEF B 1 502 502 BEF BEF . 
G 4 HOH A 1 203 203 HOH HOH . 
G 4 HOH A 2 207 207 HOH HOH . 
G 4 HOH A 3 208 208 HOH HOH . 
G 4 HOH A 4 209 209 HOH HOH . 
G 4 HOH A 5 210 210 HOH HOH . 
G 4 HOH A 6 211 211 HOH HOH . 
G 4 HOH A 7 212 212 HOH HOH . 
G 4 HOH A 8 213 213 HOH HOH . 
G 4 HOH A 9 214 214 HOH HOH . 
G 4 HOH A 10 217 217 HOH HOH . 
G 4 HOH A 11 218 218 HOH HOH . 
G 4 HOH A 12 219 219 HOH HOH . 
G 4 HOH A 13 221 221 HOH HOH . 
G 4 HOH A 14 224 224 HOH HOH . 
G 4 HOH A 15 226 226 HOH HOH . 
G 4 HOH A 16 227 227 HOH HOH . 
G 4 HOH A 17 228 228 HOH HOH . 
G 4 HOH A 18 229 229 HOH HOH . 
G 4 HOH A 19 230 230 HOH HOH . 
G 4 HOH A 20 234 234 HOH HOH . 
G 4 HOH A 21 236 236 HOH HOH . 
G 4 HOH A 22 237 237 HOH HOH . 
G 4 HOH A 23 238 238 HOH HOH . 
G 4 HOH A 24 239 239 HOH HOH . 
G 4 HOH A 25 242 242 HOH HOH . 
G 4 HOH A 26 243 243 HOH HOH . 
G 4 HOH A 27 244 244 HOH HOH . 
G 4 HOH A 28 247 247 HOH HOH . 
G 4 HOH A 29 248 248 HOH HOH . 
G 4 HOH A 30 250 250 HOH HOH . 
G 4 HOH A 31 251 251 HOH HOH . 
G 4 HOH A 32 253 253 HOH HOH . 
G 4 HOH A 33 255 255 HOH HOH . 
G 4 HOH A 34 256 256 HOH HOH . 
G 4 HOH A 35 258 258 HOH HOH . 
G 4 HOH A 36 261 261 HOH HOH . 
G 4 HOH A 37 263 263 HOH HOH . 
G 4 HOH A 38 264 264 HOH HOH . 
G 4 HOH A 39 266 266 HOH HOH . 
G 4 HOH A 40 267 267 HOH HOH . 
G 4 HOH A 41 269 269 HOH HOH . 
G 4 HOH A 42 270 270 HOH HOH . 
G 4 HOH A 43 273 273 HOH HOH . 
G 4 HOH A 44 275 275 HOH HOH . 
G 4 HOH A 45 278 278 HOH HOH . 
G 4 HOH A 46 282 282 HOH HOH . 
G 4 HOH A 47 283 283 HOH HOH . 
G 4 HOH A 48 286 286 HOH HOH . 
G 4 HOH A 49 288 288 HOH HOH . 
G 4 HOH A 50 291 291 HOH HOH . 
G 4 HOH A 51 292 292 HOH HOH . 
G 4 HOH A 52 293 293 HOH HOH . 
G 4 HOH A 53 294 294 HOH HOH . 
G 4 HOH A 54 295 295 HOH HOH . 
G 4 HOH A 55 297 297 HOH HOH . 
G 4 HOH A 56 298 298 HOH HOH . 
G 4 HOH A 57 299 299 HOH HOH . 
G 4 HOH A 58 304 304 HOH HOH . 
G 4 HOH A 59 306 306 HOH HOH . 
G 4 HOH A 60 307 307 HOH HOH . 
G 4 HOH A 61 309 309 HOH HOH . 
G 4 HOH A 62 310 310 HOH HOH . 
G 4 HOH A 63 315 315 HOH HOH . 
G 4 HOH A 64 316 316 HOH HOH . 
G 4 HOH A 65 317 317 HOH HOH . 
G 4 HOH A 66 319 319 HOH HOH . 
G 4 HOH A 67 321 321 HOH HOH . 
H 4 HOH B 1 200 200 HOH HOH . 
H 4 HOH B 2 201 201 HOH HOH . 
H 4 HOH B 3 202 202 HOH HOH . 
H 4 HOH B 4 204 204 HOH HOH . 
H 4 HOH B 5 205 205 HOH HOH . 
H 4 HOH B 6 206 206 HOH HOH . 
H 4 HOH B 7 215 215 HOH HOH . 
H 4 HOH B 8 216 216 HOH HOH . 
H 4 HOH B 9 220 220 HOH HOH . 
H 4 HOH B 10 222 222 HOH HOH . 
H 4 HOH B 11 223 223 HOH HOH . 
H 4 HOH B 12 225 225 HOH HOH . 
H 4 HOH B 13 231 231 HOH HOH . 
H 4 HOH B 14 232 232 HOH HOH . 
H 4 HOH B 15 233 233 HOH HOH . 
H 4 HOH B 16 235 235 HOH HOH . 
H 4 HOH B 17 240 240 HOH HOH . 
H 4 HOH B 18 241 241 HOH HOH . 
H 4 HOH B 19 245 245 HOH HOH . 
H 4 HOH B 20 246 246 HOH HOH . 
H 4 HOH B 21 249 249 HOH HOH . 
H 4 HOH B 22 252 252 HOH HOH . 
H 4 HOH B 23 254 254 HOH HOH . 
H 4 HOH B 24 257 257 HOH HOH . 
H 4 HOH B 25 259 259 HOH HOH . 
H 4 HOH B 26 260 260 HOH HOH . 
H 4 HOH B 27 262 262 HOH HOH . 
H 4 HOH B 28 265 265 HOH HOH . 
H 4 HOH B 29 268 268 HOH HOH . 
H 4 HOH B 30 271 271 HOH HOH . 
H 4 HOH B 31 272 272 HOH HOH . 
H 4 HOH B 32 274 274 HOH HOH . 
H 4 HOH B 33 276 276 HOH HOH . 
H 4 HOH B 34 277 277 HOH HOH . 
H 4 HOH B 35 279 279 HOH HOH . 
H 4 HOH B 36 280 280 HOH HOH . 
H 4 HOH B 37 281 281 HOH HOH . 
H 4 HOH B 38 284 284 HOH HOH . 
H 4 HOH B 39 285 285 HOH HOH . 
H 4 HOH B 40 287 287 HOH HOH . 
H 4 HOH B 41 289 289 HOH HOH . 
H 4 HOH B 42 290 290 HOH HOH . 
H 4 HOH B 43 296 296 HOH HOH . 
H 4 HOH B 44 300 300 HOH HOH . 
H 4 HOH B 45 301 301 HOH HOH . 
H 4 HOH B 46 302 302 HOH HOH . 
H 4 HOH B 47 303 303 HOH HOH . 
H 4 HOH B 48 305 305 HOH HOH . 
H 4 HOH B 49 308 308 HOH HOH . 
H 4 HOH B 50 311 311 HOH HOH . 
H 4 HOH B 51 312 312 HOH HOH . 
H 4 HOH B 52 313 313 HOH HOH . 
H 4 HOH B 53 314 314 HOH HOH . 
H 4 HOH B 54 318 318 HOH HOH . 
H 4 HOH B 55 320 320 HOH HOH . 
H 4 HOH B 56 322 322 HOH HOH . 
H 4 HOH B 57 323 323 HOH HOH . 
H 4 HOH B 58 324 324 HOH HOH . 
H 4 HOH B 59 325 325 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 BE BE BEF . . . D 3 -29.472 -56.841 4.024 1 29.2 ? BE BEF 402 A 1 
HETATM 2 F F1 BEF . . . D 3 -29.792 -56.758 2.573 1 31.7 ? F1 BEF 402 A 1 
HETATM 3 F F2 BEF . . . D 3 -29.43 -58.28 4.443 1 33.61 ? F2 BEF 402 A 1 
HETATM 4 F F3 BEF . . . D 3 -30.498 -56.086 4.814 1 33.92 ? F3 BEF 402 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           1059 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#