data_3NO8 # _model_server_result.job_id xzW0H-mXwEU77e8OiyEfwQ _model_server_result.datetime_utc '2024-12-26 11:55:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3no8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 3NO8 # _exptl.entry_id 3NO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NO8 _cell.length_a 59.513 _cell.length_b 59.513 _cell.length_c 175.919 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3NO8 _atom_sites.fract_transf_matrix[1][1] 0.016803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 2 2 GOL GOL . D 2 GOL A 1 3 3 GOL GOL . E 2 GOL A 1 4 4 GOL GOL . F 3 SO4 A 1 1 1 SO4 SO4 . G 2 GOL B 1 1 1 GOL GOL . H 4 HOH A 1 9 9 HOH HOH . H 4 HOH A 2 10 10 HOH HOH . H 4 HOH A 3 15 15 HOH HOH . H 4 HOH A 4 17 17 HOH HOH . H 4 HOH A 5 19 19 HOH HOH . H 4 HOH A 6 20 20 HOH HOH . H 4 HOH A 7 21 21 HOH HOH . H 4 HOH A 8 22 22 HOH HOH . H 4 HOH A 9 24 24 HOH HOH . H 4 HOH A 10 25 25 HOH HOH . H 4 HOH A 11 28 28 HOH HOH . H 4 HOH A 12 29 29 HOH HOH . H 4 HOH A 13 31 31 HOH HOH . H 4 HOH A 14 32 32 HOH HOH . H 4 HOH A 15 33 33 HOH HOH . H 4 HOH A 16 34 34 HOH HOH . H 4 HOH A 17 40 40 HOH HOH . H 4 HOH A 18 42 42 HOH HOH . H 4 HOH A 19 47 47 HOH HOH . H 4 HOH A 20 49 49 HOH HOH . H 4 HOH A 21 51 51 HOH HOH . H 4 HOH A 22 53 53 HOH HOH . H 4 HOH A 23 56 56 HOH HOH . H 4 HOH A 24 57 57 HOH HOH . H 4 HOH A 25 58 58 HOH HOH . H 4 HOH A 26 60 60 HOH HOH . H 4 HOH A 27 64 64 HOH HOH . H 4 HOH A 28 65 65 HOH HOH . H 4 HOH A 29 66 66 HOH HOH . H 4 HOH A 30 67 67 HOH HOH . H 4 HOH A 31 68 68 HOH HOH . H 4 HOH A 32 69 69 HOH HOH . H 4 HOH A 33 70 70 HOH HOH . H 4 HOH A 34 73 73 HOH HOH . H 4 HOH A 35 75 75 HOH HOH . H 4 HOH A 36 76 76 HOH HOH . H 4 HOH A 37 77 77 HOH HOH . H 4 HOH A 38 78 78 HOH HOH . H 4 HOH A 39 79 79 HOH HOH . H 4 HOH A 40 80 80 HOH HOH . H 4 HOH A 41 81 81 HOH HOH . H 4 HOH A 42 82 82 HOH HOH . H 4 HOH A 43 84 84 HOH HOH . H 4 HOH A 44 91 91 HOH HOH . H 4 HOH A 45 93 93 HOH HOH . H 4 HOH A 46 94 94 HOH HOH . H 4 HOH A 47 95 95 HOH HOH . H 4 HOH A 48 96 96 HOH HOH . H 4 HOH A 49 98 98 HOH HOH . H 4 HOH A 50 99 99 HOH HOH . H 4 HOH A 51 101 101 HOH HOH . H 4 HOH A 52 102 102 HOH HOH . H 4 HOH A 53 103 103 HOH HOH . H 4 HOH A 54 108 108 HOH HOH . H 4 HOH A 55 109 109 HOH HOH . H 4 HOH A 56 111 111 HOH HOH . H 4 HOH A 57 113 113 HOH HOH . H 4 HOH A 58 114 114 HOH HOH . H 4 HOH A 59 115 115 HOH HOH . H 4 HOH A 60 534 2 HOH HOH . H 4 HOH A 61 535 4 HOH HOH . I 4 HOH B 1 3 3 HOH HOH . I 4 HOH B 2 5 5 HOH HOH . I 4 HOH B 3 6 6 HOH HOH . I 4 HOH B 4 7 7 HOH HOH . I 4 HOH B 5 8 8 HOH HOH . I 4 HOH B 6 11 11 HOH HOH . I 4 HOH B 7 12 12 HOH HOH . I 4 HOH B 8 13 13 HOH HOH . I 4 HOH B 9 14 14 HOH HOH . I 4 HOH B 10 16 16 HOH HOH . I 4 HOH B 11 18 18 HOH HOH . I 4 HOH B 12 23 23 HOH HOH . I 4 HOH B 13 26 26 HOH HOH . I 4 HOH B 14 27 27 HOH HOH . I 4 HOH B 15 30 30 HOH HOH . I 4 HOH B 16 35 35 HOH HOH . I 4 HOH B 17 36 36 HOH HOH . I 4 HOH B 18 37 37 HOH HOH . I 4 HOH B 19 38 38 HOH HOH . I 4 HOH B 20 39 39 HOH HOH . I 4 HOH B 21 41 41 HOH HOH . I 4 HOH B 22 43 43 HOH HOH . I 4 HOH B 23 44 44 HOH HOH . I 4 HOH B 24 45 45 HOH HOH . I 4 HOH B 25 46 46 HOH HOH . I 4 HOH B 26 48 48 HOH HOH . I 4 HOH B 27 50 50 HOH HOH . I 4 HOH B 28 52 52 HOH HOH . I 4 HOH B 29 54 54 HOH HOH . I 4 HOH B 30 55 55 HOH HOH . I 4 HOH B 31 59 59 HOH HOH . I 4 HOH B 32 61 61 HOH HOH . I 4 HOH B 33 62 62 HOH HOH . I 4 HOH B 34 63 63 HOH HOH . I 4 HOH B 35 71 71 HOH HOH . I 4 HOH B 36 72 72 HOH HOH . I 4 HOH B 37 74 74 HOH HOH . I 4 HOH B 38 83 83 HOH HOH . I 4 HOH B 39 85 85 HOH HOH . I 4 HOH B 40 86 86 HOH HOH . I 4 HOH B 41 87 87 HOH HOH . I 4 HOH B 42 88 88 HOH HOH . I 4 HOH B 43 89 89 HOH HOH . I 4 HOH B 44 90 90 HOH HOH . I 4 HOH B 45 92 92 HOH HOH . I 4 HOH B 46 97 97 HOH HOH . I 4 HOH B 47 100 100 HOH HOH . I 4 HOH B 48 104 104 HOH HOH . I 4 HOH B 49 105 105 HOH HOH . I 4 HOH B 50 106 106 HOH HOH . I 4 HOH B 51 107 107 HOH HOH . I 4 HOH B 52 110 110 HOH HOH . I 4 HOH B 53 112 112 HOH HOH . I 4 HOH B 54 534 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 -12.317 -24.49 -24.924 1 43.8 ? C1 GOL 1 B 1 HETATM 2 O O1 GOL . . . G 2 -11.683 -23.6 -24.045 1 37 ? O1 GOL 1 B 1 HETATM 3 C C2 GOL . . . G 2 -11.518 -25.728 -25.273 1 43.44 ? C2 GOL 1 B 1 HETATM 4 O O2 GOL . . . G 2 -12.422 -26.749 -25.69 1 46.68 ? O2 GOL 1 B 1 HETATM 5 C C3 GOL . . . G 2 -10.486 -25.444 -26.337 1 45.85 ? C3 GOL 1 B 1 HETATM 6 O O3 GOL . . . G 2 -9.276 -25.06 -25.706 1 48.06 ? O3 GOL 1 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #