data_3NOL # _model_server_result.job_id vtoJLfd9H9Z5v8LzSW2g8A _model_server_result.datetime_utc '2024-11-14 17:20:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":265}' # _entry.id 3NOL # _exptl.entry_id 3NOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NOL _cell.length_a 61.423 _cell.length_b 61.423 _cell.length_c 98.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PHE 48 A PHE 48 1_555 B CA CA . A CA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 A OE1 GLU 176 A GLU 176 1_555 B CA CA . A CA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc3 A OE2 GLU 176 A GLU 176 1_555 B CA CA . A CA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc4 A O LEU 177 A LEU 177 1_555 B CA CA . A CA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc5 A OE2 GLU 178 A GLU 178 1_555 B CA CA . A CA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 A O ILE 230 A ILE 230 1_555 B CA CA . A CA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc7 B CA CA . A CA 263 1_555 F O HOH . A HOH 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3NOL _atom_sites.fract_transf_matrix[1][1] 0.01628 _atom_sites.fract_transf_matrix[1][2] 0.0094 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 263 1 CA CA . C 3 GOL A 1 3731 3731 GOL GOL . D 4 SO4 A 1 264 1 SO4 SO4 . E 3 GOL A 1 265 3731 GOL GOL . F 5 HOH A 1 266 266 HOH HOH . F 5 HOH A 2 267 267 HOH HOH . F 5 HOH A 3 268 1 HOH HOH . F 5 HOH A 4 269 269 HOH HOH . F 5 HOH A 5 270 270 HOH HOH . F 5 HOH A 6 271 271 HOH HOH . F 5 HOH A 7 272 272 HOH HOH . F 5 HOH A 8 273 273 HOH HOH . F 5 HOH A 9 274 274 HOH HOH . F 5 HOH A 10 275 275 HOH HOH . F 5 HOH A 11 276 276 HOH HOH . F 5 HOH A 12 277 277 HOH HOH . F 5 HOH A 13 278 278 HOH HOH . F 5 HOH A 14 279 2 HOH HOH . F 5 HOH A 15 280 4 HOH HOH . F 5 HOH A 16 281 5 HOH HOH . F 5 HOH A 17 282 6 HOH HOH . F 5 HOH A 18 283 7 HOH HOH . F 5 HOH A 19 284 8 HOH HOH . F 5 HOH A 20 285 9 HOH HOH . F 5 HOH A 21 286 10 HOH HOH . F 5 HOH A 22 287 11 HOH HOH . F 5 HOH A 23 288 12 HOH HOH . F 5 HOH A 24 289 13 HOH HOH . F 5 HOH A 25 290 14 HOH HOH . F 5 HOH A 26 291 15 HOH HOH . F 5 HOH A 27 292 16 HOH HOH . F 5 HOH A 28 293 17 HOH HOH . F 5 HOH A 29 294 18 HOH HOH . F 5 HOH A 30 295 19 HOH HOH . F 5 HOH A 31 296 20 HOH HOH . F 5 HOH A 32 297 21 HOH HOH . F 5 HOH A 33 298 22 HOH HOH . F 5 HOH A 34 299 23 HOH HOH . F 5 HOH A 35 300 24 HOH HOH . F 5 HOH A 36 301 25 HOH HOH . F 5 HOH A 37 302 26 HOH HOH . F 5 HOH A 38 303 27 HOH HOH . F 5 HOH A 39 304 28 HOH HOH . F 5 HOH A 40 305 29 HOH HOH . F 5 HOH A 41 306 30 HOH HOH . F 5 HOH A 42 307 31 HOH HOH . F 5 HOH A 43 308 32 HOH HOH . F 5 HOH A 44 309 33 HOH HOH . F 5 HOH A 45 310 34 HOH HOH . F 5 HOH A 46 311 35 HOH HOH . F 5 HOH A 47 312 36 HOH HOH . F 5 HOH A 48 313 37 HOH HOH . F 5 HOH A 49 314 38 HOH HOH . F 5 HOH A 50 315 39 HOH HOH . F 5 HOH A 51 316 40 HOH HOH . F 5 HOH A 52 317 41 HOH HOH . F 5 HOH A 53 318 42 HOH HOH . F 5 HOH A 54 319 43 HOH HOH . F 5 HOH A 55 320 44 HOH HOH . F 5 HOH A 56 321 45 HOH HOH . F 5 HOH A 57 322 46 HOH HOH . F 5 HOH A 58 323 47 HOH HOH . F 5 HOH A 59 324 48 HOH HOH . F 5 HOH A 60 325 49 HOH HOH . F 5 HOH A 61 326 50 HOH HOH . F 5 HOH A 62 327 52 HOH HOH . F 5 HOH A 63 328 53 HOH HOH . F 5 HOH A 64 329 54 HOH HOH . F 5 HOH A 65 330 55 HOH HOH . F 5 HOH A 66 331 56 HOH HOH . F 5 HOH A 67 332 57 HOH HOH . F 5 HOH A 68 333 58 HOH HOH . F 5 HOH A 69 334 59 HOH HOH . F 5 HOH A 70 335 60 HOH HOH . F 5 HOH A 71 336 61 HOH HOH . F 5 HOH A 72 337 62 HOH HOH . F 5 HOH A 73 338 63 HOH HOH . F 5 HOH A 74 339 64 HOH HOH . F 5 HOH A 75 340 65 HOH HOH . F 5 HOH A 76 341 66 HOH HOH . F 5 HOH A 77 342 67 HOH HOH . F 5 HOH A 78 343 68 HOH HOH . F 5 HOH A 79 344 69 HOH HOH . F 5 HOH A 80 345 70 HOH HOH . F 5 HOH A 81 346 71 HOH HOH . F 5 HOH A 82 347 72 HOH HOH . F 5 HOH A 83 348 73 HOH HOH . F 5 HOH A 84 349 74 HOH HOH . F 5 HOH A 85 350 75 HOH HOH . F 5 HOH A 86 351 76 HOH HOH . F 5 HOH A 87 352 77 HOH HOH . F 5 HOH A 88 353 78 HOH HOH . F 5 HOH A 89 354 79 HOH HOH . F 5 HOH A 90 355 80 HOH HOH . F 5 HOH A 91 356 81 HOH HOH . F 5 HOH A 92 357 82 HOH HOH . F 5 HOH A 93 358 83 HOH HOH . F 5 HOH A 94 359 84 HOH HOH . F 5 HOH A 95 360 85 HOH HOH . F 5 HOH A 96 361 86 HOH HOH . F 5 HOH A 97 362 88 HOH HOH . F 5 HOH A 98 363 89 HOH HOH . F 5 HOH A 99 364 90 HOH HOH . F 5 HOH A 100 365 91 HOH HOH . F 5 HOH A 101 366 92 HOH HOH . F 5 HOH A 102 367 93 HOH HOH . F 5 HOH A 103 368 94 HOH HOH . F 5 HOH A 104 369 95 HOH HOH . F 5 HOH A 105 370 96 HOH HOH . F 5 HOH A 106 371 97 HOH HOH . F 5 HOH A 107 372 98 HOH HOH . F 5 HOH A 108 373 99 HOH HOH . F 5 HOH A 109 374 100 HOH HOH . F 5 HOH A 110 375 101 HOH HOH . F 5 HOH A 111 376 102 HOH HOH . F 5 HOH A 112 377 104 HOH HOH . F 5 HOH A 113 378 105 HOH HOH . F 5 HOH A 114 379 106 HOH HOH . F 5 HOH A 115 380 107 HOH HOH . F 5 HOH A 116 381 108 HOH HOH . F 5 HOH A 117 382 109 HOH HOH . F 5 HOH A 118 383 110 HOH HOH . F 5 HOH A 119 384 111 HOH HOH . F 5 HOH A 120 385 112 HOH HOH . F 5 HOH A 121 386 113 HOH HOH . F 5 HOH A 122 387 114 HOH HOH . F 5 HOH A 123 388 115 HOH HOH . F 5 HOH A 124 389 116 HOH HOH . F 5 HOH A 125 390 117 HOH HOH . F 5 HOH A 126 391 118 HOH HOH . F 5 HOH A 127 392 119 HOH HOH . F 5 HOH A 128 393 120 HOH HOH . F 5 HOH A 129 394 121 HOH HOH . F 5 HOH A 130 395 122 HOH HOH . F 5 HOH A 131 396 123 HOH HOH . F 5 HOH A 132 397 124 HOH HOH . F 5 HOH A 133 398 125 HOH HOH . F 5 HOH A 134 399 126 HOH HOH . F 5 HOH A 135 400 127 HOH HOH . F 5 HOH A 136 401 128 HOH HOH . F 5 HOH A 137 402 129 HOH HOH . F 5 HOH A 138 403 130 HOH HOH . F 5 HOH A 139 404 131 HOH HOH . F 5 HOH A 140 405 132 HOH HOH . F 5 HOH A 141 406 133 HOH HOH . F 5 HOH A 142 407 134 HOH HOH . F 5 HOH A 143 408 135 HOH HOH . F 5 HOH A 144 409 136 HOH HOH . F 5 HOH A 145 410 137 HOH HOH . F 5 HOH A 146 411 138 HOH HOH . F 5 HOH A 147 412 139 HOH HOH . F 5 HOH A 148 413 140 HOH HOH . F 5 HOH A 149 414 141 HOH HOH . F 5 HOH A 150 415 142 HOH HOH . F 5 HOH A 151 416 143 HOH HOH . F 5 HOH A 152 417 145 HOH HOH . F 5 HOH A 153 418 146 HOH HOH . F 5 HOH A 154 419 147 HOH HOH . F 5 HOH A 155 420 148 HOH HOH . F 5 HOH A 156 421 149 HOH HOH . F 5 HOH A 157 422 150 HOH HOH . F 5 HOH A 158 423 151 HOH HOH . F 5 HOH A 159 424 152 HOH HOH . F 5 HOH A 160 425 154 HOH HOH . F 5 HOH A 161 426 155 HOH HOH . F 5 HOH A 162 427 156 HOH HOH . F 5 HOH A 163 428 157 HOH HOH . F 5 HOH A 164 429 158 HOH HOH . F 5 HOH A 165 430 159 HOH HOH . F 5 HOH A 166 431 160 HOH HOH . F 5 HOH A 167 432 161 HOH HOH . F 5 HOH A 168 433 162 HOH HOH . F 5 HOH A 169 434 163 HOH HOH . F 5 HOH A 170 435 165 HOH HOH . F 5 HOH A 171 436 166 HOH HOH . F 5 HOH A 172 437 167 HOH HOH . F 5 HOH A 173 438 168 HOH HOH . F 5 HOH A 174 439 169 HOH HOH . F 5 HOH A 175 440 170 HOH HOH . F 5 HOH A 176 441 171 HOH HOH . F 5 HOH A 177 442 172 HOH HOH . F 5 HOH A 178 443 174 HOH HOH . F 5 HOH A 179 444 176 HOH HOH . F 5 HOH A 180 445 177 HOH HOH . F 5 HOH A 181 446 178 HOH HOH . F 5 HOH A 182 447 179 HOH HOH . F 5 HOH A 183 448 181 HOH HOH . F 5 HOH A 184 449 182 HOH HOH . F 5 HOH A 185 450 184 HOH HOH . F 5 HOH A 186 451 185 HOH HOH . F 5 HOH A 187 452 187 HOH HOH . F 5 HOH A 188 453 188 HOH HOH . F 5 HOH A 189 454 190 HOH HOH . F 5 HOH A 190 455 191 HOH HOH . F 5 HOH A 191 456 192 HOH HOH . F 5 HOH A 192 457 193 HOH HOH . F 5 HOH A 193 458 194 HOH HOH . F 5 HOH A 194 459 195 HOH HOH . F 5 HOH A 195 460 196 HOH HOH . F 5 HOH A 196 461 197 HOH HOH . F 5 HOH A 197 462 198 HOH HOH . F 5 HOH A 198 463 199 HOH HOH . F 5 HOH A 199 464 200 HOH HOH . F 5 HOH A 200 465 201 HOH HOH . F 5 HOH A 201 466 202 HOH HOH . F 5 HOH A 202 467 203 HOH HOH . F 5 HOH A 203 468 204 HOH HOH . F 5 HOH A 204 469 205 HOH HOH . F 5 HOH A 205 470 206 HOH HOH . F 5 HOH A 206 471 207 HOH HOH . F 5 HOH A 207 472 208 HOH HOH . F 5 HOH A 208 473 209 HOH HOH . F 5 HOH A 209 474 210 HOH HOH . F 5 HOH A 210 475 211 HOH HOH . F 5 HOH A 211 476 212 HOH HOH . F 5 HOH A 212 477 213 HOH HOH . F 5 HOH A 213 478 214 HOH HOH . F 5 HOH A 214 479 215 HOH HOH . F 5 HOH A 215 480 216 HOH HOH . F 5 HOH A 216 481 218 HOH HOH . F 5 HOH A 217 482 219 HOH HOH . F 5 HOH A 218 483 220 HOH HOH . F 5 HOH A 219 484 221 HOH HOH . F 5 HOH A 220 485 222 HOH HOH . F 5 HOH A 221 486 224 HOH HOH . F 5 HOH A 222 487 225 HOH HOH . F 5 HOH A 223 488 226 HOH HOH . F 5 HOH A 224 489 227 HOH HOH . F 5 HOH A 225 490 228 HOH HOH . F 5 HOH A 226 491 229 HOH HOH . F 5 HOH A 227 492 230 HOH HOH . F 5 HOH A 228 493 231 HOH HOH . F 5 HOH A 229 494 232 HOH HOH . F 5 HOH A 230 495 233 HOH HOH . F 5 HOH A 231 496 234 HOH HOH . F 5 HOH A 232 497 235 HOH HOH . F 5 HOH A 233 498 236 HOH HOH . F 5 HOH A 234 499 237 HOH HOH . F 5 HOH A 235 500 238 HOH HOH . F 5 HOH A 236 501 239 HOH HOH . F 5 HOH A 237 502 240 HOH HOH . F 5 HOH A 238 503 241 HOH HOH . F 5 HOH A 239 504 242 HOH HOH . F 5 HOH A 240 505 243 HOH HOH . F 5 HOH A 241 506 244 HOH HOH . F 5 HOH A 242 507 245 HOH HOH . F 5 HOH A 243 508 246 HOH HOH . F 5 HOH A 244 509 247 HOH HOH . F 5 HOH A 245 510 248 HOH HOH . F 5 HOH A 246 511 249 HOH HOH . F 5 HOH A 247 512 250 HOH HOH . F 5 HOH A 248 513 251 HOH HOH . F 5 HOH A 249 514 252 HOH HOH . F 5 HOH A 250 515 253 HOH HOH . F 5 HOH A 251 516 254 HOH HOH . F 5 HOH A 252 517 255 HOH HOH . F 5 HOH A 253 518 256 HOH HOH . F 5 HOH A 254 519 257 HOH HOH . F 5 HOH A 255 520 258 HOH HOH . F 5 HOH A 256 521 259 HOH HOH . F 5 HOH A 257 522 260 HOH HOH . F 5 HOH A 258 523 261 HOH HOH . F 5 HOH A 259 524 262 HOH HOH . F 5 HOH A 260 525 263 HOH HOH . F 5 HOH A 261 526 264 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 41.237 -5.984 12.979 1 17.96 ? C1 GOL 265 A 1 HETATM 2 O O1 GOL . . . E 3 42.104 -4.859 13.122 1 18.57 ? O1 GOL 265 A 1 HETATM 3 C C2 GOL . . . E 3 41.936 -7.281 13.396 1 17.53 ? C2 GOL 265 A 1 HETATM 4 O O2 GOL . . . E 3 42.362 -7.207 14.752 1 16.33 ? O2 GOL 265 A 1 HETATM 5 C C3 GOL . . . E 3 43.135 -7.524 12.499 1 18.4 ? C3 GOL 265 A 1 HETATM 6 O O3 GOL . . . E 3 43.507 -8.856 12.7 1 18.37 ? O3 GOL 265 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #