data_3NOP # _model_server_result.job_id tX1EY3RyKjk_P9zzNnWutw _model_server_result.datetime_utc '2024-12-04 12:06:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 3NOP # _exptl.entry_id 3NOP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NOP _cell.length_a 154.38 _cell.length_b 162.979 _cell.length_c 436.098 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 12 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 12 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CBC _struct_conn.ptnr2_label_comp_id BLA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id BLA _struct_conn.ptnr2_auth_seq_id 900 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.66 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 3NOP _atom_sites.fract_transf_matrix[1][1] 0.006478 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id BLA _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 900 _pdbx_nonpoly_scheme.auth_seq_num 900 _pdbx_nonpoly_scheme.pdb_mon_id BLA _pdbx_nonpoly_scheme.auth_mon_id BLA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . B 2 -38.616 68.469 71.854 1 55.92 ? CHA BLA 900 C 1 HETATM 2 N NA BLA . . . B 2 -38.313 69.744 69.764 1 59.66 ? NA BLA 900 C 1 HETATM 3 C C1A BLA . . . B 2 -38.912 68.854 70.557 1 59.08 ? C1A BLA 900 C 1 HETATM 4 C C2A BLA . . . B 2 -39.987 68.281 69.879 1 49.42 ? C2A BLA 900 C 1 HETATM 5 C C3A BLA . . . B 2 -39.989 68.882 68.635 1 51.4 ? C3A BLA 900 C 1 HETATM 6 C C4A BLA . . . B 2 -38.94 69.789 68.589 1 43.14 ? C4A BLA 900 C 1 HETATM 7 C CMA BLA . . . B 2 -40.982 68.595 67.508 1 46.05 ? CMA BLA 900 C 1 HETATM 8 C CAA BLA . . . B 2 -40.951 67.215 70.413 1 41.12 ? CAA BLA 900 C 1 HETATM 9 C CBA BLA . . . B 2 -42.128 67.822 71.21 1 41.49 ? CBA BLA 900 C 1 HETATM 10 C CGA BLA . . . B 2 -43.01 68.765 70.38 1 52.32 ? CGA BLA 900 C 1 HETATM 11 O O1A BLA . . . B 2 -43.501 69.752 70.967 1 50.03 ? O1A BLA 900 C 1 HETATM 12 O O2A BLA . . . B 2 -43.214 68.458 69.185 1 67.29 ? O2A BLA 900 C 1 HETATM 13 C CHB BLA . . . B 2 -38.542 70.668 67.321 1 61.72 ? CHB BLA 900 C 1 HETATM 14 N NB BLA . . . B 2 -41.032 71.104 67.745 1 80.8 ? NB BLA 900 C 1 HETATM 15 C C1B BLA . . . B 2 -39.922 71.249 67.004 1 71.98 ? C1B BLA 900 C 1 HETATM 16 C C2B BLA . . . B 2 -40.248 72.025 65.897 1 73.41 ? C2B BLA 900 C 1 HETATM 17 C C3B BLA . . . B 2 -41.588 72.344 65.991 1 80.67 ? C3B BLA 900 C 1 HETATM 18 C C4B BLA . . . B 2 -42.038 71.749 67.153 1 91.36 ? C4B BLA 900 C 1 HETATM 19 C CMB BLA . . . B 2 -39.296 72.451 64.777 1 67.95 ? CMB BLA 900 C 1 HETATM 20 O OB BLA . . . B 2 -43.192 71.81 67.582 1 100.5 ? OB BLA 900 C 1 HETATM 21 C CAB BLA . . . B 2 -42.33 73.106 65.096 1 79.58 ? CAB BLA 900 C 1 HETATM 22 C CBB BLA . . . B 2 -43.667 73.381 65.361 1 94.55 ? CBB BLA 900 C 1 HETATM 23 N NC BLA . . . B 2 -34.478 71.121 70.606 1 57.34 ? NC BLA 900 C 1 HETATM 24 C C1C BLA . . . B 2 -33.88 71.798 69.628 1 64.92 ? C1C BLA 900 C 1 HETATM 25 C C2C BLA . . . B 2 -32.519 71.571 69.678 1 62.26 ? C2C BLA 900 C 1 HETATM 26 C C3C BLA . . . B 2 -32.284 70.709 70.739 1 61.28 ? C3C BLA 900 C 1 HETATM 27 C C4C BLA . . . B 2 -33.537 70.456 71.283 1 58.47 ? C4C BLA 900 C 1 HETATM 28 C CMC BLA . . . B 2 -31.511 72.184 68.713 1 73.69 ? CMC BLA 900 C 1 HETATM 29 O OC BLA . . . B 2 -34.445 72.52 68.807 1 58.79 ? OC BLA 900 C 1 HETATM 30 C CAC BLA . . . B 2 -30.987 70.093 71.288 1 70.48 ? CAC BLA 900 C 1 HETATM 31 C CBC BLA . . . B 2 -29.716 70.655 70.664 1 91.03 ? CBC BLA 900 C 1 HETATM 32 C CHD BLA . . . B 2 -33.742 69.554 72.486 1 48.22 ? CHD BLA 900 C 1 HETATM 33 N ND BLA . . . B 2 -36.217 69.207 71.784 1 54.3 ? ND BLA 900 C 1 HETATM 34 C C1D BLA . . . B 2 -35.181 69.07 72.623 1 50.04 ? C1D BLA 900 C 1 HETATM 35 C C2D BLA . . . B 2 -35.634 68.371 73.715 1 57.07 ? C2D BLA 900 C 1 HETATM 36 C C3D BLA . . . B 2 -36.962 68.071 73.528 1 54.87 ? C3D BLA 900 C 1 HETATM 37 C C4D BLA . . . B 2 -37.309 68.617 72.302 1 50.48 ? C4D BLA 900 C 1 HETATM 38 C CMD BLA . . . B 2 -34.781 67.993 74.922 1 48.49 ? CMD BLA 900 C 1 HETATM 39 C CAD BLA . . . B 2 -37.85 67.323 74.508 1 44.18 ? CAD BLA 900 C 1 HETATM 40 C CBD BLA . . . B 2 -38.245 68.304 75.606 1 52.47 ? CBD BLA 900 C 1 HETATM 41 C CGD BLA . . . B 2 -39.123 67.622 76.643 1 55.91 ? CGD BLA 900 C 1 HETATM 42 O O1D BLA . . . B 2 -38.547 67.217 77.678 1 59.98 ? O1D BLA 900 C 1 HETATM 43 O O2D BLA . . . B 2 -40.336 67.487 76.362 1 42.99 ? O2D BLA 900 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #