data_3NP1 # _model_server_result.job_id '_u0slzjiXTi4gkaxEpux1g' _model_server_result.datetime_utc '2024-11-22 12:58:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3np1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":185}' # _entry.id 3NP1 # _exptl.entry_id 3NP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 26.017 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYANIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.51 _cell.angle_gamma 90 _cell.entry_id 3NP1 _cell.length_a 39.39 _cell.length_b 74.22 _cell.length_c 66.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 122 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 41 A CYS 41 1_555 A SG CYS 171 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 2 B CYS 2 1_555 B SG CYS 122 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 B SG CYS 41 B CYS 41 1_555 B SG CYS 171 B CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A NE2 HIS 59 A HIS 59 1_555 E FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc2 C C CYN . A CYN 185 1_555 E FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc3 C N CYN . A CYN 185 1_555 E FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.022 ? metalc ? metalc4 B NE2 HIS 59 B HIS 59 1_555 H FE HEM . B HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc5 F C CYN . B CYN 185 1_555 H FE HEM . B HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc6 F N CYN . B CYN 185 1_555 H FE HEM . B HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? # _chem_comp.formula 'C N -1' _chem_comp.formula_weight 26.017 _chem_comp.id CYN _chem_comp.mon_nstd_flag . _chem_comp.name 'CYANIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 N _chem_comp_bond.comp_id CYN _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 3NP1 _atom_sites.fract_transf_matrix[1][1] 0.025387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYN A 1 185 2 CYN CYN . D 3 PO4 A 1 301 301 PO4 PO4 . E 4 HEM A 1 302 1 HEM HEM . F 2 CYN B 1 185 2 CYN CYN . G 3 PO4 B 1 302 302 PO4 PO4 . H 4 HEM B 1 303 1 HEM HEM . I 5 HOH A 1 303 303 HOH HOH . I 5 HOH A 2 304 304 HOH HOH . I 5 HOH A 3 305 305 HOH HOH . I 5 HOH A 4 306 306 HOH HOH . I 5 HOH A 5 307 307 HOH HOH . I 5 HOH A 6 308 308 HOH HOH . I 5 HOH A 7 309 309 HOH HOH . I 5 HOH A 8 310 310 HOH HOH . I 5 HOH A 9 311 311 HOH HOH . I 5 HOH A 10 312 312 HOH HOH . I 5 HOH A 11 313 313 HOH HOH . I 5 HOH A 12 314 314 HOH HOH . I 5 HOH A 13 315 315 HOH HOH . I 5 HOH A 14 316 316 HOH HOH . I 5 HOH A 15 317 317 HOH HOH . I 5 HOH A 16 318 318 HOH HOH . I 5 HOH A 17 319 319 HOH HOH . I 5 HOH A 18 320 320 HOH HOH . I 5 HOH A 19 321 321 HOH HOH . I 5 HOH A 20 322 322 HOH HOH . I 5 HOH A 21 323 323 HOH HOH . I 5 HOH A 22 325 325 HOH HOH . I 5 HOH A 23 327 327 HOH HOH . I 5 HOH A 24 328 328 HOH HOH . I 5 HOH A 25 329 329 HOH HOH . I 5 HOH A 26 330 330 HOH HOH . I 5 HOH A 27 332 332 HOH HOH . I 5 HOH A 28 333 333 HOH HOH . I 5 HOH A 29 334 334 HOH HOH . I 5 HOH A 30 335 335 HOH HOH . I 5 HOH A 31 336 336 HOH HOH . I 5 HOH A 32 337 337 HOH HOH . I 5 HOH A 33 338 338 HOH HOH . I 5 HOH A 34 339 339 HOH HOH . I 5 HOH A 35 340 340 HOH HOH . I 5 HOH A 36 341 341 HOH HOH . I 5 HOH A 37 342 342 HOH HOH . I 5 HOH A 38 343 343 HOH HOH . I 5 HOH A 39 344 344 HOH HOH . I 5 HOH A 40 345 345 HOH HOH . I 5 HOH A 41 346 346 HOH HOH . I 5 HOH A 42 347 347 HOH HOH . I 5 HOH A 43 348 348 HOH HOH . I 5 HOH A 44 349 349 HOH HOH . I 5 HOH A 45 350 350 HOH HOH . I 5 HOH A 46 351 351 HOH HOH . I 5 HOH A 47 352 352 HOH HOH . I 5 HOH A 48 353 353 HOH HOH . I 5 HOH A 49 354 354 HOH HOH . I 5 HOH A 50 355 355 HOH HOH . I 5 HOH A 51 357 357 HOH HOH . I 5 HOH A 52 358 358 HOH HOH . I 5 HOH A 53 359 359 HOH HOH . I 5 HOH A 54 364 364 HOH HOH . I 5 HOH A 55 365 365 HOH HOH . I 5 HOH A 56 366 366 HOH HOH . I 5 HOH A 57 367 367 HOH HOH . I 5 HOH A 58 368 368 HOH HOH . I 5 HOH A 59 369 369 HOH HOH . I 5 HOH A 60 371 371 HOH HOH . I 5 HOH A 61 372 372 HOH HOH . I 5 HOH A 62 389 389 HOH HOH . I 5 HOH A 63 391 391 HOH HOH . J 5 HOH B 1 324 324 HOH HOH . J 5 HOH B 2 326 326 HOH HOH . J 5 HOH B 3 331 331 HOH HOH . J 5 HOH B 4 356 356 HOH HOH . J 5 HOH B 5 360 360 HOH HOH . J 5 HOH B 6 361 361 HOH HOH . J 5 HOH B 7 362 362 HOH HOH . J 5 HOH B 8 363 363 HOH HOH . J 5 HOH B 9 370 370 HOH HOH . J 5 HOH B 10 373 373 HOH HOH . J 5 HOH B 11 374 374 HOH HOH . J 5 HOH B 12 375 375 HOH HOH . J 5 HOH B 13 376 376 HOH HOH . J 5 HOH B 14 377 377 HOH HOH . J 5 HOH B 15 378 378 HOH HOH . J 5 HOH B 16 379 379 HOH HOH . J 5 HOH B 17 380 380 HOH HOH . J 5 HOH B 18 381 381 HOH HOH . J 5 HOH B 19 382 382 HOH HOH . J 5 HOH B 20 383 383 HOH HOH . J 5 HOH B 21 384 384 HOH HOH . J 5 HOH B 22 385 385 HOH HOH . J 5 HOH B 23 386 386 HOH HOH . J 5 HOH B 24 387 387 HOH HOH . J 5 HOH B 25 388 388 HOH HOH . J 5 HOH B 26 390 390 HOH HOH . J 5 HOH B 27 392 392 HOH HOH . J 5 HOH B 28 393 393 HOH HOH . J 5 HOH B 29 394 394 HOH HOH . J 5 HOH B 30 395 395 HOH HOH . J 5 HOH B 31 396 396 HOH HOH . J 5 HOH B 32 397 397 HOH HOH . J 5 HOH B 33 398 398 HOH HOH . J 5 HOH B 34 399 399 HOH HOH . J 5 HOH B 35 400 400 HOH HOH . J 5 HOH B 36 401 401 HOH HOH . J 5 HOH B 37 402 402 HOH HOH . J 5 HOH B 38 403 403 HOH HOH . J 5 HOH B 39 404 404 HOH HOH . J 5 HOH B 40 405 405 HOH HOH . J 5 HOH B 41 406 406 HOH HOH . J 5 HOH B 42 407 407 HOH HOH . J 5 HOH B 43 408 408 HOH HOH . J 5 HOH B 44 409 409 HOH HOH . J 5 HOH B 45 410 410 HOH HOH . J 5 HOH B 46 411 411 HOH HOH . J 5 HOH B 47 412 412 HOH HOH . J 5 HOH B 48 413 413 HOH HOH . J 5 HOH B 49 414 414 HOH HOH . J 5 HOH B 50 415 415 HOH HOH . J 5 HOH B 51 416 416 HOH HOH . J 5 HOH B 52 417 417 HOH HOH . J 5 HOH B 53 418 418 HOH HOH . J 5 HOH B 54 419 419 HOH HOH . J 5 HOH B 55 420 420 HOH HOH . J 5 HOH B 56 421 421 HOH HOH . J 5 HOH B 57 422 422 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CYN . . . C 2 25.025 27.13 61.917 1 22.62 ? C CYN 185 A 1 HETATM 2 N N CYN . . . C 2 24.764 28.246 61.986 1 24.15 ? N CYN 185 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 2 #